Hi jen,
In your original dataset, there are extra spaces around the tabs.
Where ^I indicates a tab and $ indicates an end-of-line character,
the entire datafile looks like this:
chr5 ^I 47258168 ^I 47259240$
chr18 ^I 1938527 ^I 1939965$
chr2 ^I 101973625 ^I 101974007$
chr4 ^I 75653898 ^I
Hi all,
i am not sure if this is the right forum.
but i need as much access to start up information on the system for
developers.
we are part of a group in Kenya trying to come up with some apps on a
gnome sequencing project we are starting here.
regards
--
Fabian .J. Owuor
Hi,
I was trying to extract FASTA sequences using the following tab separated data
for Chicken on the Galaxy Main server:
chr5 4725816847259240
chr181938527 1939965
chr2 101973625 101974007
chr4 7565389875674045
chr194258837 4263299
Stephen,
This is a formatting issue with your input file; it needs to be tab-delimited
but it's not currently. You'll need to:
(a) convert spaces to tabs using the Convert delimiters to Tabs tool;
(b) click on the pencil icon and set the data type to BED.
Best,
J.
On Jun 21, 2011, at 8:45 AM,
Hi Jeremy,
This is a formatting issue with your input file; it needs to be tab-delimited
but it's not currently. You'll need to:
(a) convert spaces to tabs using the Convert delimiters to Tabs tool;
(b) click on the pencil icon and set the data type to BED.
Thanks, this works, but as a
Hi Stephen,
In your original dataset, there are extra spaces around the tabs.
Where ^I indicates a tab and $ indicates an end-of-line character,
the entire datafile looks like this:
chr5 ^I 47258168 ^I 47259240$
chr18 ^I 1938527 ^I 1939965$
chr2 ^I 101973625 ^I 101974007$
chr4 ^I 75653898 ^I
From: galaxy-user-boun...@lists.bx.psu.edu
[galaxy-user-boun...@lists.bx.psu.edu] On Behalf Of Jennifer Jackson
[j...@bx.psu.edu]
Sent: Tuesday, June 21, 2011 10:23 AM
To: Stephen Taylor
Cc: galaxy-u...@bx.psu.edu
Subject: Re: [galaxy-user] Extract Genomic DNA Problem
Hi Stephen,
In your original
To: Stephen Taylor
Cc: galaxy-u...@bx.psu.edu
Subject: Re: [galaxy-user] Extract Genomic DNA Problem
Hi Stephen,
In your original dataset, there are extra spaces around the tabs.
Where ^I indicates a tab and $ indicates an end-of-line character,
the entire datafile looks like this:
chr5 ^I 47258168 ^I
Hi,
I was trying to extract FASTA sequences using the following tab separated data
for Chicken on the Galaxy Main server:
chr5 4725816847259240
chr181938527 1939965
chr2 101973625 101974007
chr4 7565389875674045
chr194258837 4263299
9 matches
Mail list logo
