Re: [galaxy-user] Galaxy--upload data file

2011-01-21 Thread Jennifer Jackson 

Hi Pi,

Your ideas are great, too. The dev team appreciates all input and this 
will be passed along, too.

Thanks for the feedback!

Best,

Jen
Galaxy team

On 1/20/11 1:41 AM, Pieter Neerincx wrote:

Hi Jen,

If you do that, please make it an option in universe_wsgi.ini. It's fine if 
uploads of>  2GB will be disabled by default, but please allow me to enable it 
if it's working for me...

Cheers,

Pi

On Jan 19, 2011, at 8:12 PM, Jennifer Jackson wrote:


Hi Farhat,

This is reasonable suggestion, I'll pass this along to the development team for 
consideration.

Thanks for using Galaxy!

Jen
Galaxy team

On 1/19/11 10:50 AM, Farhat Habib wrote:

Would it be possible to configure Galaxy to simply refuse to upload
files greater than 2 GB since almost no browsers seem to support it? A
large number of people seem to run into this issue.

-Farhat



On Wed, Jan 19, 2011 at 9:02 PM, Jennifer Jacksonmailto:j...@bx.psu.edu>>  wrote:

Hello Takako,

The best way to load data locally is to use the the method described
here:

https://bitbucket.org/galaxy/galaxy-central/wiki/DataLibraries/UploadingFiles

Please let us know if we can help more,

Best,

Jen
Galaxy team

On 1/18/11 4:18 PM, Nan Deng wrote:

Hi,

I installed Galaxy locally, and just start to use it, and I want
to use
it to align my short reads with fastq format using Tophat. The first
thing I need to do is uploading my data file. If the data is
small then
that's no problem, but my data is about 5G, so when I upload, it
took
very long time (it is still uploading). Is it normal? and could
you let
me know how long it will take? I think since both Galaxy and my
data are
on my local machine, it should be very easy to let Galaxy know
where the
data is rather than uploading for such a long time.

Thanks

Nan



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Re: [galaxy-user] Galaxy--upload data file

2011-01-20 Thread Pieter Neerincx 
Hi Jen,

If you do that, please make it an option in universe_wsgi.ini. It's fine if 
uploads of > 2GB will be disabled by default, but please allow me to enable it 
if it's working for me...

Cheers,

Pi

On Jan 19, 2011, at 8:12 PM, Jennifer Jackson wrote:

> Hi Farhat,
> 
> This is reasonable suggestion, I'll pass this along to the development team 
> for consideration.
> 
> Thanks for using Galaxy!
> 
> Jen
> Galaxy team
> 
> On 1/19/11 10:50 AM, Farhat Habib wrote:
>> Would it be possible to configure Galaxy to simply refuse to upload
>> files greater than 2 GB since almost no browsers seem to support it? A
>> large number of people seem to run into this issue.
>> 
>> -Farhat
>> 
>> 
>> 
>> On Wed, Jan 19, 2011 at 9:02 PM, Jennifer Jackson > > wrote:
>> 
>>Hello Takako,
>> 
>>The best way to load data locally is to use the the method described
>>here:
>>
>> https://bitbucket.org/galaxy/galaxy-central/wiki/DataLibraries/UploadingFiles
>> 
>>Please let us know if we can help more,
>> 
>>Best,
>> 
>>Jen
>>Galaxy team
>> 
>>On 1/18/11 4:18 PM, Nan Deng wrote:
>> 
>>Hi,
>> 
>>I installed Galaxy locally, and just start to use it, and I want
>>to use
>>it to align my short reads with fastq format using Tophat. The first
>>thing I need to do is uploading my data file. If the data is
>>small then
>>that's no problem, but my data is about 5G, so when I upload, it
>>took
>>very long time (it is still uploading). Is it normal? and could
>>you let
>>me know how long it will take? I think since both Galaxy and my
>>data are
>>on my local machine, it should be very easy to let Galaxy know
>>where the
>>data is rather than uploading for such a long time.
>> 
>>Thanks
>> 
>>Nan
>> 
>> 
>> 
>>___
>>galaxy-user mailing list
>>galaxy-user@lists.bx.psu.edu 
>>http://lists.bx.psu.edu/listinfo/galaxy-user
>> 
>> 
>>--
>>Jennifer Jackson
>>http://usegalaxy.org
>>___
>>galaxy-user mailing list
>>galaxy-user@lists.bx.psu.edu 
>>http://lists.bx.psu.edu/listinfo/galaxy-user
>> 
>> 
> 
> -- 
> Jennifer Jackson
> http://usegalaxy.org
> http://galaxyproject.org
> ___
> galaxy-user mailing list
> galaxy-user@lists.bx.psu.edu
> http://lists.bx.psu.edu/listinfo/galaxy-user

-
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skype:  pieter.online
-


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Re: [galaxy-user] Galaxy--upload data file

2011-01-19 Thread Jennifer Jackson 

Hi Farhat,

This is reasonable suggestion, I'll pass this along to the development 
team for consideration.


Thanks for using Galaxy!

Jen
Galaxy team

On 1/19/11 10:50 AM, Farhat Habib wrote:

Would it be possible to configure Galaxy to simply refuse to upload
files greater than 2 GB since almost no browsers seem to support it? A
large number of people seem to run into this issue.

-Farhat



On Wed, Jan 19, 2011 at 9:02 PM, Jennifer Jackson mailto:j...@bx.psu.edu>> wrote:

Hello Takako,

The best way to load data locally is to use the the method described
here:

https://bitbucket.org/galaxy/galaxy-central/wiki/DataLibraries/UploadingFiles

Please let us know if we can help more,

Best,

Jen
Galaxy team

On 1/18/11 4:18 PM, Nan Deng wrote:

Hi,

I installed Galaxy locally, and just start to use it, and I want
to use
it to align my short reads with fastq format using Tophat. The first
thing I need to do is uploading my data file. If the data is
small then
that's no problem, but my data is about 5G, so when I upload, it
took
very long time (it is still uploading). Is it normal? and could
you let
me know how long it will take? I think since both Galaxy and my
data are
on my local machine, it should be very easy to let Galaxy know
where the
data is rather than uploading for such a long time.

Thanks

Nan



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http://galaxyproject.org
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Re: [galaxy-user] Galaxy--upload data file

2011-01-19 Thread Farhat Habib 
Would it be possible to configure Galaxy to simply refuse to upload files
greater than 2 GB since almost no browsers seem to support it? A large
number of people seem to run into this issue.

-Farhat



On Wed, Jan 19, 2011 at 9:02 PM, Jennifer Jackson  wrote:

> Hello Takako,
>
> The best way to load data locally is to use the the method described here:
>
> https://bitbucket.org/galaxy/galaxy-central/wiki/DataLibraries/UploadingFiles
>
> Please let us know if we can help more,
>
> Best,
>
> Jen
> Galaxy team
>
> On 1/18/11 4:18 PM, Nan Deng wrote:
>
>> Hi,
>>
>> I installed Galaxy locally, and just start to use it, and I want to use
>> it to align my short reads with fastq format using Tophat. The first
>> thing I need to do is uploading my data file. If the data is small then
>> that's no problem, but my data is about 5G, so when I upload, it took
>> very long time (it is still uploading). Is it normal? and could you let
>> me know how long it will take? I think since both Galaxy and my data are
>> on my local machine, it should be very easy to let Galaxy know where the
>> data is rather than uploading for such a long time.
>>
>> Thanks
>>
>> Nan
>>
>>
>>
>> ___
>> galaxy-user mailing list
>> galaxy-user@lists.bx.psu.edu
>> http://lists.bx.psu.edu/listinfo/galaxy-user
>>
>
> --
> Jennifer Jackson
> http://usegalaxy.org
> ___
> galaxy-user mailing list
> galaxy-user@lists.bx.psu.edu
> http://lists.bx.psu.edu/listinfo/galaxy-user
>
___
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Re: [galaxy-user] Galaxy--upload data file

2011-01-19 Thread Jennifer Jackson 

Hello Takako,

The best way to load data locally is to use the the method described here:
https://bitbucket.org/galaxy/galaxy-central/wiki/DataLibraries/UploadingFiles

Please let us know if we can help more,

Best,

Jen
Galaxy team

On 1/18/11 4:18 PM, Nan Deng wrote:

Hi,

I installed Galaxy locally, and just start to use it, and I want to use
it to align my short reads with fastq format using Tophat. The first
thing I need to do is uploading my data file. If the data is small then
that's no problem, but my data is about 5G, so when I upload, it took
very long time (it is still uploading). Is it normal? and could you let
me know how long it will take? I think since both Galaxy and my data are
on my local machine, it should be very easy to let Galaxy know where the
data is rather than uploading for such a long time.

Thanks

Nan



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[galaxy-user] Galaxy--upload data file

2011-01-19 Thread Nan Deng 
 Hi,

 I installed Galaxy locally, and just start to use it, and I want to use it 
to align my short reads with fastq format using Tophat. The first thing I need 
to do is uploading my data file. If the data is small then that's no problem, 
but my data is about 5G, so when I upload, it took very long time (it is still 
uploading). Is it normal? and could you let me know how long it will take? I 
think since both Galaxy and my data are on my local machine, it should be very 
easy to let Galaxy know where the data is rather than uploading for such a long 
time.

Thanks

Nan
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