Re: [galaxy-user] HMM tool in Galaxy??
Thank you for the prompt reply. Will look forward to it. Best, Surya On Tue, Mar 29, 2011 at 10:56 AM, Jeremy Goecks wrote: > > Hi, > > Are there any tools like HMMER (2.3.2 or 3.0) available on Galaxy to run a > HMM on a DNA or protein sequence? I was not able to find any. Thanks > > -Surya > > > Surya, > > HMMer is not available on our public server, nor is there anything similar. > However, there is a wrapper for hmmscan in the Galaxy Tool Shed: > http://community.g2.bx.psu.edu/ that you can use if download and install > on a local Galaxy instance. > > I expect we'll add HMM support in the future, but it's not a priority right > now. > > Best, > J. > > > ___ The Galaxy User list should be used for the discussion of Galaxy analysis and other features on the public server at usegalaxy.org. Please keep all replies on the list by using "reply all" in your mail client. For discussion of local Galaxy instances and the Galaxy source code, please use the Galaxy Development list: http://lists.bx.psu.edu/listinfo/galaxy-dev To manage your subscriptions to this and other Galaxy lists, please use the interface at: http://lists.bx.psu.edu/
Re: [galaxy-user] HMM tool in Galaxy??
> Hi, > > Are there any tools like HMMER (2.3.2 or 3.0) available on Galaxy to run a > HMM on a DNA or protein sequence? I was not able to find any. Thanks > > -Surya Surya, HMMer is not available on our public server, nor is there anything similar. However, there is a wrapper for hmmscan in the Galaxy Tool Shed: http://community.g2.bx.psu.edu/ that you can use if download and install on a local Galaxy instance. I expect we'll add HMM support in the future, but it's not a priority right now. Best, J. ___ The Galaxy User list should be used for the discussion of Galaxy analysis and other features on the public server at usegalaxy.org. Please keep all replies on the list by using "reply all" in your mail client. For discussion of local Galaxy instances and the Galaxy source code, please use the Galaxy Development list: http://lists.bx.psu.edu/listinfo/galaxy-dev To manage your subscriptions to this and other Galaxy lists, please use the interface at: http://lists.bx.psu.edu/
[galaxy-user] HMM tool in Galaxy??
Hi, Are there any tools like HMMER (2.3.2 or 3.0) available on Galaxy to run a HMM on a DNA or protein sequence? I was not able to find any. Thanks -Surya ___ The Galaxy User list should be used for the discussion of Galaxy analysis and other features on the public server at usegalaxy.org. Please keep all replies on the list by using "reply all" in your mail client. For discussion of local Galaxy instances and the Galaxy source code, please use the Galaxy Development list: http://lists.bx.psu.edu/listinfo/galaxy-dev To manage your subscriptions to this and other Galaxy lists, please use the interface at: http://lists.bx.psu.edu/
