Re: [galaxy-user] How to add alignment to the MAF

Hello Lyni, Are you still having problems with your analysis? If so, then I can point you to a few tools that can help. - FASTA manipulation - Tabular-to-FASTA and FASTA-to-Tabular - Text Manipulation - Concatenate datasets - Filter and Sort - Sort I am not sure how many RNA-seq

[galaxy-user] How to add alignment to the MAF

Hi galaxy, I'm trying to know the coding potential of my RNA-seq transcripts by phylogeny analysis. So I want to generate a FASTA file that includes ORF of my sequence and 29 other mammalian species. I usedExtract MAF blocks and Stitch MAF blocks using my RNA-seq data(gtf file from