Re: [galaxy-user] Query not starting

[Neel Aluru]

Hi Jen,

Thank you for the reply. Yes, I noticed today that my queries are 
running. I apologize for deleting and re-running them. I thought 
something is wrong with my files and they are not working properly.  I 
will be more patient from now on.


Thanks,
Neel

On 5/13/13 4:59 PM, Jennifer Jackson wrote:

Hi Neel,

The public Main Galaxy instance is very busy, but I can let you know 
that I see your account in the queue in line for processing. The best 
option is to leave the job alone to process, and to not delete/re-run it.


If you want to send me a link to your shared history, I would be glad 
to double check the situation. You can email direct to me.


Thank you for your patience,

Jen
Galaxy team

On 5/12/13 6:57 AM, Neel Aluru wrote:

Hello,

I am having problem with starting my query. For days it is showing 
"Job waiting to run". Is the system backed up and there is a long 
queue? or is there a problem with my query? Normally if there is any 
problem it shows an error message. I am within the usage limits. I am 
trying to map my SOLiD data set to custom reference genome (fasta 
format). I converted the SOLiD output to fastq. Then I am using Map 
with Bowtie for SOLiD. Everything went fine quickly except the last 
step, which waiting for over 6 days now. Any help or suggestions 
appreciated.


Thank you,
Neel

Neel Aluru
Assistant Scientist
Biology Department
Redfield Building 3-04
Woods Hole Oceanographic Institution
45, Water Street
Woods Hole, MA

nal...@whoi.edu 
508-289-3607
http://www.whoi.edu/page.do?pid=109916



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--
Jennifer Hillman-Jackson
Galaxy Support and Training
http://galaxyproject.org



--
Neel Aluru, Ph.D.
Assistant Scientist
Biology Department
Woods Hole Oceanographic Institution
Woods Hole 02543 MA
USA
Phone:508-289-3607
Fax:508-457-2134
http://www.whoi.edu/profile/naluru/

___
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Galaxy analysis and other features on the public server
at usegalaxy.org.  Please keep all replies on the list by
using "reply all" in your mail client.  For discussion of
local Galaxy instances and the Galaxy source code, please
use the Galaxy Development list:

  http://lists.bx.psu.edu/listinfo/galaxy-dev

To manage your subscriptions to this and other Galaxy lists,
please use the interface at:

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Re: [galaxy-user] Query not starting

[Jennifer Jackson]

Hi Neel,

The public Main Galaxy instance is very busy, but I can let you know 
that I see your account in the queue in line for processing. The best 
option is to leave the job alone to process, and to not delete/re-run it.


If you want to send me a link to your shared history, I would be glad to 
double check the situation. You can email direct to me.


Thank you for your patience,

Jen
Galaxy team

On 5/12/13 6:57 AM, Neel Aluru wrote:

Hello,

I am having problem with starting my query. For days it is showing 
"Job waiting to run". Is the system backed up and there is a long 
queue? or is there a problem with my query? Normally if there is any 
problem it shows an error message. I am within the usage limits. I am 
trying to map my SOLiD data set to custom reference genome (fasta 
format). I converted the SOLiD output to fastq. Then I am using Map 
with Bowtie for SOLiD. Everything went fine quickly except the last 
step, which waiting for over 6 days now. Any help or suggestions 
appreciated.


Thank you,
Neel

Neel Aluru
Assistant Scientist
Biology Department
Redfield Building 3-04
Woods Hole Oceanographic Institution
45, Water Street
Woods Hole, MA

nal...@whoi.edu 
508-289-3607
http://www.whoi.edu/page.do?pid=109916



___
The Galaxy User list should be used for the discussion of
Galaxy analysis and other features on the public server
at usegalaxy.org.  Please keep all replies on the list by
using "reply all" in your mail client.  For discussion of
local Galaxy instances and the Galaxy source code, please
use the Galaxy Development list:

   http://lists.bx.psu.edu/listinfo/galaxy-dev

To manage your subscriptions to this and other Galaxy lists,
please use the interface at:

   http://lists.bx.psu.edu/

To search Galaxy mailing lists use the unified search at:

   http://galaxyproject.org/search/mailinglists/


--
Jennifer Hillman-Jackson
Galaxy Support and Training
http://galaxyproject.org

___
The Galaxy User list should be used for the discussion of
Galaxy analysis and other features on the public server
at usegalaxy.org.  Please keep all replies on the list by
using "reply all" in your mail client.  For discussion of
local Galaxy instances and the Galaxy source code, please
use the Galaxy Development list:

  http://lists.bx.psu.edu/listinfo/galaxy-dev

To manage your subscriptions to this and other Galaxy lists,
please use the interface at:

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To search Galaxy mailing lists use the unified search at:

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[galaxy-user] Query not starting

[Neel Aluru]

Hello,

I am having problem with starting my query. For days it is showing "Job waiting 
to run". Is the system backed up and there is a long queue? or is there a 
problem with my query? Normally if there is any problem it shows an error 
message. I am within the usage limits. I am trying to map my SOLiD data set to 
custom reference genome (fasta format). I converted the SOLiD output to fastq. 
Then I am using Map with Bowtie for SOLiD. Everything went fine quickly except 
the last step, which waiting for over 6 days now. Any help or suggestions 
appreciated.

Thank you,
Neel
 
Neel Aluru
Assistant Scientist
Biology Department 
Redfield Building 3-04
Woods Hole Oceanographic Institution
45, Water Street
Woods Hole, MA

nal...@whoi.edu
508-289-3607
http://www.whoi.edu/page.do?pid=109916

___
The Galaxy User list should be used for the discussion of
Galaxy analysis and other features on the public server
at usegalaxy.org.  Please keep all replies on the list by
using "reply all" in your mail client.  For discussion of
local Galaxy instances and the Galaxy source code, please
use the Galaxy Development list:

  http://lists.bx.psu.edu/listinfo/galaxy-dev

To manage your subscriptions to this and other Galaxy lists,
please use the interface at:

  http://lists.bx.psu.edu/

To search Galaxy mailing lists use the unified search at:

  http://galaxyproject.org/search/mailinglists/