Re: [galaxy-user] problem uploading via FTP server

2012-09-14 Thread Jennifer Jackson 

Linda,

There was some maintenance performed this morning that may be related to 
job delays (a notice was on the Galaxy Main masthead most of the week). 
That is now complete.


Was the FTP this morning and did FileZilla report that both were 
successful? Are you still having a problem with the history dataset load?


Please let us know if you are still having problems,

Jen
Galaxy team

On 9/14/12 3:02 AM, L.M. Slot wrote:

Dear Galaxy,

I am using Galaxy on my work for analysing a whole genome sequencing
project.

On the server I wanted to upload two BAM files (ALL and FL). With
FileZilla I uploaded them on the FTP server because the files are around
20 GB.

When I tried to upload them in Galaxy I can see them in the list from
the FTP server and when I try to upload them they appear in the column
on the right, but they stay gray and the comment 'job is waiting to run'
stays present instead of 'job running' or 'completed'.

Hopefully you can help me with this problem.

With kind regards,

Linda Slot

Linda Slot, MSc

AMC Amsterdam

Department of Pathology, L2-115

Meibergdreef 9

1105 AZ Amsterdam

The Netherlands

tel.nr. 020-5665638

What to include in a question

1.Where you are using Galaxy: Main ,
other public, local, or cloud instance

2.End-user questions from Test  are
generally not sent/supported - /Test is for breaking/

3.If a local or cloud instance, the distribution or galaxy-central hg
pull #

4.If on Main , date/time the initial and
ru-run jobs were executed

5.If there is an example/issue, exact steps to reproduce

6.What troubleshooting steps (if a problem is being reported) you have
tested out

7.If on Main , you may be asked for a
shared history link. Use */Options /**/→/**/Share or Publish/*, generate
the link, and email it directly back off-list. Note the dataset #'s you
have questions about.

8.*IMPORTANT*: Get the /quickest answer/ for data questions by leaving
*all* of the input and output datasets in the analysis thread in your
shared history */undeleted/* until we have written you back. Use
*/Options /**/→/**/Show Deleted Datasets/*and click dataset links to
*/undelete/* to recover datasets if necessary

9.*Always */reply-all/*unless sharing a private link*



AMC Disclaimer : http://www.amc.nl/disclaimer





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--
Jennifer Jackson
http://galaxyproject.org
___
The Galaxy User list should be used for the discussion of
Galaxy analysis and other features on the public server
at usegalaxy.org.  Please keep all replies on the list by
using "reply all" in your mail client.  For discussion of
local Galaxy instances and the Galaxy source code, please
use the Galaxy Development list:

 http://lists.bx.psu.edu/listinfo/galaxy-dev

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[galaxy-user] problem uploading via FTP server

2012-09-14 Thread L.M. Slot 
Dear Galaxy,

I am using Galaxy on my work for analysing a whole genome sequencing project.

On the server I wanted to upload two BAM files (ALL and FL). With FileZilla I 
uploaded them on the FTP server because the files are around 20 GB.
When I tried to upload them in Galaxy I can see them in the list from the FTP 
server and when I try to upload them they appear in the column on the right, 
but they stay gray and the comment 'job is waiting to run' stays present 
instead of 'job running' or 'completed'.

Hopefully you can help me with this problem.

With kind regards,

Linda Slot

Linda Slot, MSc
AMC Amsterdam
Department of Pathology, L2-115
Meibergdreef 9
1105 AZ Amsterdam
The Netherlands
tel.nr. 020-5665638

What to include in a question

1.Where you are using Galaxy: Main, other 
public, local, or cloud instance

2.End-user questions from Test are 
generally not sent/supported - Test is for breaking
3.If a local or cloud instance, the distribution or galaxy-central hg pull #

4.If on Main, date/time the initial and 
ru-run jobs were executed
5.If there is an example/issue, exact steps to reproduce
6.What troubleshooting steps (if a problem is being reported) you have 
tested out

7.If on Main, you may be asked for a shared 
history link. Use Options → Share or Publish, generate the link, and email it 
directly back off-list. Note the dataset #'s you have questions about.

8.IMPORTANT: Get the quickest answer for data questions by leaving all of 
the input and output datasets in the analysis thread in your shared history 
undeleted until we have written you back. Use Options → Show Deleted Datasets 
and click dataset links to undelete to recover datasets if necessary

9.Always reply-all unless sharing a private link




AMC Disclaimer : http://www.amc.nl/disclaimer


___
The Galaxy User list should be used for the discussion of
Galaxy analysis and other features on the public server
at usegalaxy.org.  Please keep all replies on the list by
using "reply all" in your mail client.  For discussion of
local Galaxy instances and the Galaxy source code, please
use the Galaxy Development list:

  http://lists.bx.psu.edu/listinfo/galaxy-dev

To manage your subscriptions to this and other Galaxy lists,
please use the interface at:

  http://lists.bx.psu.edu/