Re: [galaxy-user] Adding the Hydra genome to Galaxy

2011-04-06 Thread Rob Steele
Hi Kelly, Thanks much! Cheers, Rob Rob Steele, Ph.D. Professor D240 Medical Sciences I Department of Biological Chemistry School of Medicine University of California, Irvine Irvine, CA 92697-1700 phone: 949-824-7341 e-mail: reste...@uci.edu fax: 949-824-2688 web: http://polyp.biochem.uci.ed

Re: [galaxy-user] Adding the Hydra genome to Galaxy

2011-04-06 Thread Kelly Vincent
Hi, Hydra_JCVI is now available in Galaxy for several tools, including NGS analysis. Let us know if you run into any problems using it. Regards, Kelly ___ The Galaxy User list should be used for the discussion of Galaxy analysis and ot

Re: [galaxy-user] Adding the Hydra genome to Galaxy

2011-03-07 Thread Jennifer Jackson
Thanks Rob, This definitely helps - we appreciate the additional info. This is on our high-priority list and Kelly will get back to you if we have more questions. Best, Jen On 3/7/11 1:23 PM, Rob Steele wrote: Hi Jen, The easiest way to refer to this genome would be Hydra_JCVI. This way we

Re: [galaxy-user] Adding the Hydra genome to Galaxy

2011-03-07 Thread Rob Steele
Hi Jen, The easiest way to refer to this genome would be Hydra_JCVI. This way we know it is the JCVI assembly (ABRM). ACZU is a separate assembly that was done at Berkeley. Including the two mitochondrial genomes would be a good idea. The many WGS submissions under ABRM

Re: [galaxy-user] Adding the Hydra genome to Galaxy

2011-03-07 Thread Jennifer Jackson
Hi Rob, The project ABRM links to several thousand individual WGS submissions. Are there scaffolds or some type of assembled sequence available? Or, perhaps there an alternate source? Also, did you want us to include the two mitochondrial genomes from NCBI in the main assembly (once

Re: [galaxy-user] Adding the Hydra genome to Galaxy

2011-03-06 Thread Rob Steele
Hi Jen, How are things progressing with the Hydra genome? Cheers, Rob Rob Steele, Ph.D. Professor D240 Medical Sciences I Department of Biological Chemistry School of Medicine University of California, Irvine Irvine, CA 92697-1700 phone: 949-824-7341 e-mail: reste...@uci.edu fax: 949-824-26

Re: [galaxy-user] Adding the Hydra genome to Galaxy

2011-02-15 Thread Jennifer Jackson
Hello Rob, This genome is being worked on right now and should be available soon. Please feel free to check back a few weeks again for an update if you do not see it by then. Thanks! Jen Galaxy team On 2/14/11 3:20 PM, Rob Steele wrote: Hi Jen et al., Sorry to be a pest, but do you have an

Re: [galaxy-user] Adding the Hydra genome to Galaxy

2011-02-14 Thread Rob Steele
Hi Jen et al., Sorry to be a pest, but do you have an estimate for when the Hydra genome will be added to Galaxy? Cheers, Rob Rob Steele, Ph.D. Professor D240 Medical Sciences I Department of Biological Chemistry School of Medicine University of California, Irvine Irvine, CA 92697-1700 phone:

Re: [galaxy-user] Adding the Hydra genome to Galaxy

2011-01-03 Thread Jennifer Jackson
Hello Rob, We will add this to our to-do list for new genomes. Thanks for sending the Genbank information! Next time, if you could send requests to galaxy-user, that would be very helpful for the team. Best, Jen Galaxy team On 1/3/11 12:37 PM, Rob Steele wrote: Hi Jennifer, Would it be p