Re: [galaxy-user] disk quota not updating
On Nov 30, 2011, at 12:49 PM, Richard Mark White wrote: Hi, I was nearing my disk quota (at 97%), so I deleted a large number of datasets using delete permanently. But my usage did not go down at all. Is there a delay in this happening, or is there some way to purge the files? Hi Richard, It can take a bit if you delete a large amount of data at once. Did your usage eventually decrease? --nate richard ___ The Galaxy User list should be used for the discussion of Galaxy analysis and other features on the public server at usegalaxy.org. Please keep all replies on the list by using reply all in your mail client. For discussion of local Galaxy instances and the Galaxy source code, please use the Galaxy Development list: http://lists.bx.psu.edu/listinfo/galaxy-dev To manage your subscriptions to this and other Galaxy lists, please use the interface at: http://lists.bx.psu.edu/ ___ The Galaxy User list should be used for the discussion of Galaxy analysis and other features on the public server at usegalaxy.org. Please keep all replies on the list by using reply all in your mail client. For discussion of local Galaxy instances and the Galaxy source code, please use the Galaxy Development list: http://lists.bx.psu.edu/listinfo/galaxy-dev To manage your subscriptions to this and other Galaxy lists, please use the interface at: http://lists.bx.psu.edu/
Re: [galaxy-user] disk quota not updating
yup...took a while, but eventually resolved. thanks. rich From: Nate Coraor n...@bx.psu.edu To: Richard Mark White whit...@yahoo.com Cc: Jennifer Jackson j...@bx.psu.edu; galaxy-u...@bx.psu.edu galaxy-u...@bx.psu.edu Sent: Monday, December 5, 2011 3:39 PM Subject: Re: [galaxy-user] disk quota not updating On Nov 30, 2011, at 12:49 PM, Richard Mark White wrote: Hi, I was nearing my disk quota (at 97%), so I deleted a large number of datasets using delete permanently. But my usage did not go down at all. Is there a delay in this happening, or is there some way to purge the files? Hi Richard, It can take a bit if you delete a large amount of data at once. Did your usage eventually decrease? --nate richard ___ The Galaxy User list should be used for the discussion of Galaxy analysis and other features on the public server at usegalaxy.org. Please keep all replies on the list by using reply all in your mail client. For discussion of local Galaxy instances and the Galaxy source code, please use the Galaxy Development list: http://lists.bx.psu.edu/listinfo/galaxy-dev To manage your subscriptions to this and other Galaxy lists, please use the interface at: http://lists.bx.psu.edu/___ The Galaxy User list should be used for the discussion of Galaxy analysis and other features on the public server at usegalaxy.org. Please keep all replies on the list by using reply all in your mail client. For discussion of local Galaxy instances and the Galaxy source code, please use the Galaxy Development list: http://lists.bx.psu.edu/listinfo/galaxy-dev To manage your subscriptions to this and other Galaxy lists, please use the interface at: http://lists.bx.psu.edu/
Re: [galaxy-user] disk quota not updating
Hi, Thanks for the info and I did what you suggested. But still no luck. I deleted everything, and when I add up the data totals in my active histories (I have nothing shared) it adds up to 376gb, but i am showing 100%. any ideas? rich From: Jennifer Jackson j...@bx.psu.edu To: Richard Mark White whit...@yahoo.com; galaxy-u...@bx.psu.edu galaxy-u...@bx.psu.edu Cc: closetic...@galaxyproject.org Sent: Wednesday, November 30, 2011 1:09 PM Subject: disk quota not updating Hi Richard, Yes, it takes a short time for the UI counts to update. If you deleted permanently, then the result should be what you expected. Should the quota count remain high by tomorrow, that would point to an issue with lingering data counting in the quota. Places to search for unexplained disk use: 1 - Older pre-quota deleted datasets that were not permanently deleted. You can check for these in the View Histories - advanced - deleted set. The far right column Status will note deleted vs permanently deleted. 2 - Shared histories can count towards a quota. So, if not needed or only portions are, copy out of these what you want to use and ask the user that shared the data to unshared you, so you don't get stuck with the entire history in your quota. Shared histories/data and quotas are somewhat tricky to tune, and better solutions may be developed as the details are worked out, but this is the current implementation. A good feature to know about is that an imported dataset from a public Data Library never counts towards your quota (if left unmodified). You have probably seen this, but for others who may be reading the thread, this wiki has many details and tips for managing data: http://galaxyproject.org/wiki/Learn/Managing%20Datasets One last comment - it would be very helpful for us if questions were sent with the mailing list as a to recipient, so that our ticket tracker picks it up. Hopefully this helps! And please feel free to ask if you need more help or the disk size is not what you expect after the counts refresh. Best, Jen Galaxy team On 11/30/11 9:49 AM, Richard Mark White wrote: Hi, I was nearing my disk quota (at 97%), so I deleted a large number of datasets using delete permanently. But my usage did not go down at all. Is there a delay in this happening, or is there some way to purge the files? richard -- Jennifer Jackson http://usegalaxy.org http://galaxyproject.org/wiki/Support___ The Galaxy User list should be used for the discussion of Galaxy analysis and other features on the public server at usegalaxy.org. Please keep all replies on the list by using reply all in your mail client. For discussion of local Galaxy instances and the Galaxy source code, please use the Galaxy Development list: http://lists.bx.psu.edu/listinfo/galaxy-dev To manage your subscriptions to this and other Galaxy lists, please use the interface at: http://lists.bx.psu.edu/
Re: [galaxy-user] disk quota not updating
Hi Rich, This sounds correct. The quota is set on Main to be 250G. So anything at or over that amount will be 100% of use. http://galaxyproject.org/wiki/Main#User_data_and_job_quotas If I misunderstood your question, please provide more details. Thanks! Jen Galaxy team On 11/30/11 12:07 PM, Richard Mark White wrote: Hi, Thanks for the info and I did what you suggested. But still no luck. I deleted everything, and when I add up the data totals in my active histories (I have nothing shared) it adds up to 376gb, but i am showing 100%. any ideas? rich *From:* Jennifer Jackson j...@bx.psu.edu *To:* Richard Mark White whit...@yahoo.com; galaxy-u...@bx.psu.edu galaxy-u...@bx.psu.edu *Cc:* closetic...@galaxyproject.org *Sent:* Wednesday, November 30, 2011 1:09 PM *Subject:* disk quota not updating Hi Richard, Yes, it takes a short time for the UI counts to update. If you deleted permanently, then the result should be what you expected. Should the quota count remain high by tomorrow, that would point to an issue with lingering data counting in the quota. Places to search for unexplained disk use: 1 - Older pre-quota deleted datasets that were not permanently deleted. You can check for these in the View Histories - advanced - deleted set. The far right column Status will note deleted vs permanently deleted. 2 - Shared histories can count towards a quota. So, if not needed or only portions are, copy out of these what you want to use and ask the user that shared the data to unshared you, so you don't get stuck with the entire history in your quota. Shared histories/data and quotas are somewhat tricky to tune, and better solutions may be developed as the details are worked out, but this is the current implementation. A good feature to know about is that an imported dataset from a public Data Library never counts towards your quota (if left unmodified). You have probably seen this, but for others who may be reading the thread, this wiki has many details and tips for managing data: http://galaxyproject.org/wiki/Learn/Managing%20Datasets One last comment - it would be very helpful for us if questions were sent with the mailing list as a to recipient, so that our ticket tracker picks it up. Hopefully this helps! And please feel free to ask if you need more help or the disk size is not what you expect after the counts refresh. Best, Jen Galaxy team On 11/30/11 9:49 AM, Richard Mark White wrote: Hi, I was nearing my disk quota (at 97%), so I deleted a large number of datasets using delete permanently. But my usage did not go down at all. Is there a delay in this happening, or is there some way to purge the files? richard -- Jennifer Jackson http://usegalaxy.org http://galaxyproject.org/wiki/Support -- Jennifer Jackson http://usegalaxy.org http://galaxyproject.org/wiki/Support ___ The Galaxy User list should be used for the discussion of Galaxy analysis and other features on the public server at usegalaxy.org. Please keep all replies on the list by using reply all in your mail client. For discussion of local Galaxy instances and the Galaxy source code, please use the Galaxy Development list: http://lists.bx.psu.edu/listinfo/galaxy-dev To manage your subscriptions to this and other Galaxy lists, please use the interface at: http://lists.bx.psu.edu/
