Re: [galaxy-user] error running cufflinks

2013-02-01 Thread Jennifer Jackson
Hi Davide, Would you be able to send this in as a bug report? This will allow us to check out the details. You basically just click on the "green bug icon" for one of the datasets in the group and submit, but this wiki also explains: http://wiki.galaxyproject.org/Support#Reporting_tool_errors

Re: [galaxy-user] Error running cufflinks on Galaxy

2011-06-29 Thread Aleks Schein
, June 10, 2011 3:58 PM To: David Robinson Cc: galaxy-user@lists.bx.psu.edu Subject: Re: [galaxy-user] Error running cufflinks on Galaxy Hello David, Cufflinks requires locally cached data to perform the Bias Correction function. Without seeing any sample data, a quick guess is that changing the

Re: [galaxy-user] Error running cufflinks on Galaxy

2011-06-24 Thread Aleks Schein
f Jennifer Jackson Sent: Friday, June 10, 2011 3:58 PM To: David Robinson Cc: galaxy-user@lists.bx.psu.edu Subject: Re: [galaxy-user] Error running cufflinks on Galaxy Hello David, Cufflinks requires locally cached data to perform the Bias Correction function. Without seeing any sample data, a quick

Re: [galaxy-user] Error running cufflinks on Galaxy

2011-06-22 Thread Jennifer Jackson
-user-boun...@lists.bx.psu.edu [mailto:galaxy-user- boun...@lists.bx.psu.edu] On Behalf Of Jennifer Jackson Sent: Friday, June 10, 2011 3:58 PM To: David Robinson Cc: galaxy-user@lists.bx.psu.edu Subject: Re: [galaxy-user] Error running cufflinks on Galaxy Hello David, Cufflinks requires locally c

Re: [galaxy-user] Error running cufflinks on Galaxy

2011-06-22 Thread Robert Curtis Hendrickson
n...@lists.bx.psu.edu [mailto:galaxy-user- > boun...@lists.bx.psu.edu] On Behalf Of Jennifer Jackson > Sent: Friday, June 10, 2011 3:58 PM > To: David Robinson > Cc: galaxy-user@lists.bx.psu.edu > Subject: Re: [galaxy-user] Error running cufflinks on Galaxy > > Hello David, >

Re: [galaxy-user] Error running cufflinks on Galaxy

2011-06-10 Thread admiral . david
Hello, Dr. Jeremy Goecks already sent me an response that fixed the problem (perhaps forgetting to email the list as well)- I was using unsorted output directly from Bowtie. When I tried using a TopHat BAM file it worked. Thank you for your reply! -David On Jun 10, 2011 4:58pm, Jennifer J

Re: [galaxy-user] Error running cufflinks on Galaxy

2011-06-10 Thread Jennifer Jackson
Hello David, Cufflinks requires locally cached data to perform the Bias Correction function. Without seeing any sample data, a quick guess is that changing the option "Tool: Cufflinks -> Perform Bias Correction:" from yes to no in that workflow step will probably correct the problem. Anoth