Hi Davide,
Would you be able to send this in as a bug report? This will allow us to
check out the details. You basically just click on the "green bug icon"
for one of the datasets in the group and submit, but this wiki also
explains:
http://wiki.galaxyproject.org/Support#Reporting_tool_errors
, June 10, 2011 3:58 PM
To: David Robinson
Cc: galaxy-user@lists.bx.psu.edu
Subject: Re: [galaxy-user] Error running cufflinks on Galaxy
Hello David,
Cufflinks requires locally cached data to perform the Bias Correction
function.
Without seeing any sample data, a quick guess is that changing the
f Jennifer Jackson
Sent: Friday, June 10, 2011 3:58 PM
To: David Robinson
Cc: galaxy-user@lists.bx.psu.edu
Subject: Re: [galaxy-user] Error running cufflinks on Galaxy
Hello David,
Cufflinks requires locally cached data to perform the Bias Correction
function.
Without seeing any sample data, a quick
-user-boun...@lists.bx.psu.edu [mailto:galaxy-user-
boun...@lists.bx.psu.edu] On Behalf Of Jennifer Jackson
Sent: Friday, June 10, 2011 3:58 PM
To: David Robinson
Cc: galaxy-user@lists.bx.psu.edu
Subject: Re: [galaxy-user] Error running cufflinks on Galaxy
Hello David,
Cufflinks requires locally c
n...@lists.bx.psu.edu [mailto:galaxy-user-
> boun...@lists.bx.psu.edu] On Behalf Of Jennifer Jackson
> Sent: Friday, June 10, 2011 3:58 PM
> To: David Robinson
> Cc: galaxy-user@lists.bx.psu.edu
> Subject: Re: [galaxy-user] Error running cufflinks on Galaxy
>
> Hello David,
>
Hello,
Dr. Jeremy Goecks already sent me an response that fixed the problem
(perhaps forgetting to email the list as well)- I was using unsorted output
directly from Bowtie. When I tried using a TopHat BAM file it worked.
Thank you for your reply!
-David
On Jun 10, 2011 4:58pm, Jennifer J
Hello David,
Cufflinks requires locally cached data to perform the Bias Correction
function.
Without seeing any sample data, a quick guess is that changing the
option "Tool: Cufflinks -> Perform Bias Correction:" from yes to no in
that workflow step will probably correct the problem.
Anoth
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