[gmx-users] RE: Molecule out of pbc box

2010-08-26 Thread Nimesh Jain
Hi, Does anyone know if there is a way to put a molecule back in the pbc box in gromacs. I am visualizing my sims in vmd and the molecule keeps going out of the box. Is it normal or an artifact in vmd, is there a way to put the molecule back in the box? please let me know. Thanks, Nimesh --

Re: [gmx-users] RE: Molecule out of pbc box

2010-08-26 Thread Justin A. Lemkul
Nimesh Jain wrote: Hi, Does anyone know if there is a way to put a molecule back in the pbc box in gromacs. I am visualizing my sims in vmd and the molecule keeps going out of the box. Is it normal or an artifact in vmd, is there a way to put the molecule back in the box? please let me

Re: [gmx-users] RE: Molecule out of pbc box

2010-08-26 Thread Mark Abraham
- Original Message - From: Nimesh Jain nimeshjain2...@u.northwestern.edu Date: Friday, August 27, 2010 0:15 Subject: [gmx-users] RE: Molecule out of pbc box To: Discussion list for GROMACS users gmx-users@gromacs.org Hi, Does anyone know if there is a way to put a molecule back