Re: [gmx-users] Unable to view trajectory in pymol or vmd

Hi, In VMD: 1. Load the *.gro file 2. Load the *.trr file See the Amber basic workshop - tutorial 2 for more ideas: http://ambermd.org/tutorials/basic/tutorial2/ regards, Carlos 2008/10/14 vivek sharma [EMAIL PROTECTED] Hi There, I have few MD trajectory, I want to analyze them

Re: [gmx-users] Unable to view trajectory in pymol or vmd

Hi David, Thanks for your response. I was not loading any pdb file. Do I need to do so ? where ? With Thanks, Vivek 2008/10/14 David van der Spoel [EMAIL PROTECTED] vivek sharma wrote: Hi There, I have few MD trajectory, I want to analyze them visually (other than ngmx option as it gives

Re: [gmx-users] Unable to view trajectory in pymol or vmd

vivek sharma wrote: Hi David, Thanks for your response. I was not loading any pdb file. Do I need to do so ? where ? previous poster just explained in VMD load pdb then load traj.xtc or traj.trr With Thanks, Vivek 2008/10/14 David van der Spoel [EMAIL PROTECTED] mailto:[EMAIL PROTECTED]

RE: [gmx-users] Unable to view trajectory in pymol or vmd

Hi, Or even simpler, just from the command-line: vmd conf.gro traj.trr or vmd conf.pdb traj.trr Berk Date: Tue, 14 Oct 2008 01:22:40 -0500 From: [EMAIL PROTECTED] To: gmx-users@gromacs.org Subject: Re: [gmx-users] Unable to view trajectory in pymol or vmd Hi, In VMD: 1. Load the *.gro file

[gmx-users] Unable to view trajectory in pymol or vmd

Hi There, I have few MD trajectory, I want to analyze them visually (other than ngmx option as it gives very few option). I tried for opening those trajectories in vmd and pymol but not able to view them. It shows me the trajectory loaded, but not viewing anything. Is there any check to be doen