Re: [gpc-informatics] #280: Medication ontology orgainzed by ingredient

edu; gpc-dev@listserv.kumc.edu; jeff.kl...@mgh.harvard.edu Subject: Re: [gpc-informatics] #280: Medication ontology orgainzed by ingredient #280: Medication ontology orgainzed by ingredient -+ Reporter: preeder | Owner: campbell Type:

Re: [gpc-informatics] #280: Medication ontology orgainzed by ingredient

#280: Medication ontology orgainzed by ingredient -+ Reporter: preeder | Owner: campbell Type: enhancement | Status: closed Priority: major| Milestone: snow-shrine-3 Component: data-stds| Resolution:

Re: [gpc-informatics] #280: Medication ontology orgainzed by ingredient

#280: Medication ontology orgainzed by ingredient -+ Reporter: preeder | Owner: campbell Type: enhancement | Status: assigned Priority: major| Milestone: snow-shrine-3 Component: data-stds|

Re: [gpc-informatics] #280: Medication ontology orgainzed by ingredient

#280: Medication ontology orgainzed by ingredient -+ Reporter: preeder | Owner: campbell Type: enhancement | Status: assigned Priority: major| Milestone: snow-shrine-2 Component: data-stds|

Re: [gpc-informatics] #280: Medication ontology orgainzed by ingredient

#280: Medication ontology orgainzed by ingredient -+ Reporter: preeder | Owner: campbell Type: enhancement | Status: assigned Priority: major| Milestone: snow-shrine-2 Component: data-stds|

Re: [gpc-informatics] #280: Medication ontology orgainzed by ingredient

#280: Medication ontology orgainzed by ingredient -+ Reporter: preeder | Owner: campbell Type: enhancement | Status: assigned Priority: major| Milestone: snow-shrine-2 Component: data-stds|

Re: [gpc-informatics] #280: Medication ontology orgainzed by ingredient

#280: Medication ontology orgainzed by ingredient -+ Reporter: preeder | Owner: campbell Type: enhancement | Status: assigned Priority: major| Milestone: snow-shrine-2 Component: data-stds|

Re: [gpc-informatics] #280: Medication ontology orgainzed by ingredient

#280: Medication ontology orgainzed by ingredient -+ Reporter: preeder | Owner: campbell Type: enhancement | Status: assigned Priority: major| Milestone: snow-shrine-2 Component: data-stds|

Re: [gpc-informatics] #280: Medication ontology orgainzed by ingredient

rd.edu>, "gpc-dev@listserv.kumc.edu" <gpc-dev@listserv.kumc.edu>, "huhick...@nebraskamed.com" <huhick...@nebraskamed.com>, "dconno...@kumc.edu" <dconno...@kumc.edu>, "rwait...@kumc.edu" <rwait...@kumc.edu> Cc: "mprit...@kum

Re: [gpc-informatics] #280: Medication ontology orgainzed by ingredient

; huhick...@nebraskamed.com; dconno...@kumc.edu; rwait...@kumc.edu Cc: mprit...@kumc.edu Subject: RE: [gpc-informatics] #280: Medication ontology orgainzed by ingredient Jay In followup to our discussion yesterday, post the i2b2 metadata to the website of Jeff’s choosing for his analysis Jim From

RE: [gpc-informatics] #280: Medication ontology orgainzed by ingredient

<campb...@unmc.edu>; gpc-dev@listserv.kumc.edu; huhick...@nebraskamed.com; dconno...@kumc.edu; rwait...@kumc.edu Cc: mprit...@kumc.edu Subject: Re: [gpc-informatics] #280: Medication ontology orgainzed by ingredient Jay, have you posted this ontology anywhere we could download it and take a l

Re: [gpc-informatics] #280: Medication ontology orgainzed by ingredient

dconno...@kumc.edu>, "rwait...@kumc.edu" <rwait...@kumc.edu> Cc: "mprit...@kumc.edu" <mprit...@kumc.edu> Subject: Re: [gpc-informatics] #280: Medication ontology orgainzed by ingredient Hi, We are using the VA drug classes (NDF-RT) for building Medicatio

RE: [gpc-informatics] #280: Medication ontology orgainzed by ingredient

@listserv.kumc.edu; Michael Prittie; Campbell, James R Subject: Re: [gpc-informatics] #280: Medication ontology orgainzed by ingredient Hi, A "contrib" repo in SCILHS works for me. It gives me a place to put this ... and a place for you to take a look at it, etc. Jay Pedersen, M.A.

Re: [gpc-informatics] #280: Medication ontology orgainzed by ingredient

@listserv.kumc.edu>, Jeffrey KLANN <jeff.kl...@mgh.harvard.edu>, Michael Prittie <mprit...@kumc.edu>, "Campbell, James R" <campb...@unmc.edu> Subject: Re: [gpc-informatics] #280: Medication ontology orgainzed by ingredient Hi, I wasn't sure where to put the code

Re: [gpc-informatics] #280: Medication ontology orgainzed by ingredient

Prittie <mprit...@kumc.edu>, "Campbell, James R" <campb...@unmc.edu> Subject: Re: [gpc-informatics] #280: Medication ontology orgainzed by ingredient Hi, I wasn't sure where to put the code in github. I believe we are glad to share the code, which is written in python

Re: [gpc-informatics] #280: Medication ontology orgainzed by ingredient

<dconno...@kumc.edu> Sent: Monday, April 24, 2017 8:56:13 PM To: Pedersen, Jay G Cc: Hubert Hickman; Russ Waitman; gpc-dev@listserv.kumc.edu; Klann, Jeffrey G.; Michael Prittie; Campbell, James R Subject: Re: [gpc-informatics] #280: Medication ontology orgainzed by ingredient Yes, it's on babel. B

Re: [gpc-informatics] #280: Medication ontology orgainzed by ingredient

c.edu; Pedersen, Jay G; Campbell, James R; huhick...@nebraskamed.com; dconno...@kumc.edu; rwait...@kumc.edu Cc: mprit...@kumc.edu Subject: Re: [gpc-informatics] #280: Medication ontology orgainzed by ingredient Yes, I have not seen it either. Please point us to it, thanks. On 4/24/17, 11:59 AM

Re: [gpc-informatics] #280: Medication ontology orgainzed by ingredient

) From: Klann, Jeffrey G. <jeff.kl...@mgh.harvard.edu> Sent: Monday, April 24, 2017 11:15:23 AM To: gpc-dev@listserv.kumc.edu; Pedersen, Jay G; Campbell, James R; huhick...@nebraskamed.com; dconno...@kumc.edu; rwait...@kumc.edu Cc: mprit...@kumc.edu Subject: Re: [gpc-informatics] #280: Medi

Re: [gpc-informatics] #280: Medication ontology orgainzed by ingredient

Yes, I have not seen it either. Please point us to it, thanks. On 4/24/17, 11:59 AM, "GPC Informatics" wrote: #280: Medication ontology orgainzed by ingredient -+ Reporter: preeder | Owner:

Re: [gpc-informatics] #280: Medication ontology orgainzed by ingredient

#280: Medication ontology orgainzed by ingredient -+ Reporter: preeder | Owner: jay.pedersen Type: enhancement | Status: assigned Priority: major| Milestone: snow-shrine-2 Component: data-stds|

Re: [gpc-informatics] #280: Medication ontology orgainzed by ingredient

#280: Medication ontology orgainzed by ingredient -+ Reporter: preeder | Owner: jay.pedersen Type: enhancement | Status: assigned Priority: major| Milestone: snow-shrine-2 Component: data-stds|

Re: [gpc-informatics] #280: Medication ontology orgainzed by ingredient

#280: Medication ontology orgainzed by ingredient -+ Reporter: preeder | Owner: jay.pedersen Type: enhancement | Status: assigned Priority: major| Milestone: snow-shrine-2 Component: data-stds|

RE: [gpc-informatics] #280: Medication ontology orgainzed by ingredient

: Tuesday, April 11, 2017 10:37 PM To: gpc-dev@listserv.kumc.edu; Pedersen, Jay G <jay.peder...@unmc.edu>; Campbell, James R <campb...@unmc.edu>; huhick...@nebraskamed.com; dconno...@kumc.edu; rwait...@kumc.edu Cc: mprit...@kumc.edu Subject: Re: [gpc-informatics] #280: M

Re: [gpc-informatics] #280: Medication ontology orgainzed by ingredient

: [gpc-informatics] #280: Medication ontology orgainzed by ingredient Great, I see that Dan opened a ticket about BABELing. Not sure where you’re pushing it but please let me know when you have and we’ll be glad to take a look. It looks like you are using ATC, not NDF-RT (VA)? Also, if you are inc

Re: [gpc-informatics] #280: Medication ontology orgainzed by ingredient

l 11, 2017 10:37 PM To: gpc-dev@listserv.kumc.edu; Pedersen, Jay G <jay.peder...@unmc.edu>; Campbell, James R <campb...@unmc.edu>; huhick...@nebraskamed.com; dconno...@kumc.edu; rwait...@kumc.edu Cc: mprit...@kumc.edu Subject: Re: [gpc-informatics] #280: Medication ontol

RE: [gpc-informatics] #280: Medication ontology orgainzed by ingredient

Subject: Re: [gpc-informatics] #280: Medication ontology orgainzed by ingredient It is *extremely* slow to browse. Can you check your indexes? I’d like to explore your hard work but it’s unusable right now. ( I tried a few random other trees and they were also unbrowsably-slow. Is there an epi

Re: [gpc-informatics] #280: Medication ontology orgainzed by ingredient

quot;Kowalski, George" <gkowal...@mcw.edu<mailto:gkowal...@mcw.edu>> Date: Wednesday, April 12, 2017 at 8:00 AM To: "gpc-dev@listserv.kumc.edu<mailto:gpc-dev@listserv.kumc.edu>" <gpc-dev@listserv.kumc.edu<mailto:gpc-dev@listserv.kumc.edu>> Subject: R

Re: [gpc-informatics] #280: Medication ontology orgainzed by ingredient

listserv.kumc.edu" <gpc-dev@listserv.kumc.edu> Subject: Re: [gpc-informatics] #280: Medication ontology orgainzed by ingredient All, I reloaded our ontology here at MCW on Monday , It seemed to go well via phpPgAdmin, but Now I can’t browse our ontology without a “database error”

Re: [gpc-informatics] #280: Medication ontology orgainzed by ingredient

It is *extremely* slow to browse. Can you check your indexes? I’d like to explore your hard work but it’s unusable right now. ( I tried a few random other trees and they were also unbrowsably-slow. Is there an epidemic of bad indexes on babel? ) Thanks, Jeffrey Klann, PhD Instructor of

Re: [gpc-informatics] #280: Medication ontology orgainzed by ingredient

#280: Medication ontology orgainzed by ingredient -+ Reporter: preeder | Owner: jay.pedersen Type: enhancement | Status: assigned Priority: major| Milestone: snow-shrine-2 Component: data-stds|

RE: [gpc-informatics] #280: Medication ontology orgainzed by ingredient

@mgh.harvard.edu Subject: RE: [gpc-informatics] #280: Medication ontology orgainzed by ingredient Ok, here is how I count 11 1) RX_BASIS DI 2) RX_BASIS PR 3) RX_BASIS AD 4) RX_DAYS_SUPPLY 5) RX_FREQ 6) RX_QUANTITY 7) RX_REFILLS 8) RX_STRENGTH 9) RX_ROUTE 10) RX_DOSE 11) RX_DETAIL I guess you'

RE: [gpc-informatics] #280: Medication ontology orgainzed by ingredient

ara [dlyos...@wisc.edu] Sent: Monday, March 20, 2017 10:09 AM To: gpc-dev@listserv.kumc.edu; Thomas Mish; campb...@unmc.edu; huhick...@nebraskamed.com; Dan Connolly; Russ Waitman Cc: jeff.kl...@mgh.harvard.edu Subject: RE: [gpc-informatics] #280: Medication ontology orgainzed by ingredient I have l

Re: [gpc-informatics] #280: Medication ontology orgainzed by ingredient

March 20, 2017 10:09 AM >To: gpc-dev@listserv.kumc.edu; Thomas Mish; campb...@unmc.edu; >huhick...@nebraskamed.com; Dan Connolly; Russ Waitman >Cc: jeff.kl...@mgh.harvard.edu >Subject: RE: [gpc-informatics] #280: Medication ontology orgainzed by >ingredient > >I have looked over the

RE: [gpc-informatics] #280: Medication ontology orgainzed by ingredient

.edu] Sent: Monday, March 20, 2017 10:09 AM To: gpc-dev@listserv.kumc.edu; Thomas Mish; campb...@unmc.edu; huhick...@nebraskamed.com; Dan Connolly; Russ Waitman Cc: jeff.kl...@mgh.harvard.edu Subject: RE: [gpc-informatics] #280: Medication ontology orgainzed by ingredient I have looked over these

RE: [gpc-informatics] #280: Medication ontology orgainzed by ingredient

; rwait...@kumc.edu Cc: gpc-dev@listserv.kumc.edu; jeff.kl...@mgh.harvard.edu Subject: Re: [gpc-informatics] #280: Medication ontology orgainzed by ingredient #280: Medication ontology orgainzed by ingredient -+ Reporter: preeder

RE: [gpc-informatics] #280: Medication ontology orgainzed by ingredient

mprit...@kumc.edu; jeff.kl...@mgh.harvard.edu Subject: Re: [gpc-informatics] #280: Medication ontology orgainzed by ingredient #280: Medication ontology orgainzed by ingredient -+ Reporter: preeder | Owner: mish Type: enhan

Re: [gpc-informatics] #280: Medication ontology orgainzed by ingredient

#280: Medication ontology orgainzed by ingredient -+ Reporter: preeder | Owner: mish Type: enhancement | Status: assigned Priority: major| Milestone: snow-shrine-2 Component: data-stds| Resolution:

Re: [gpc-informatics] #280: Medication ontology orgainzed by ingredient

#280: Medication ontology orgainzed by ingredient -+ Reporter: preeder | Owner: jay.pedersen Type: enhancement | Status: assigned Priority: major| Milestone: snow-shrine-2 Component: data-stds|

Re: [gpc-informatics] #280: Medication ontology orgainzed by ingredient

#280: Medication ontology orgainzed by ingredient -+ Reporter: preeder | Owner: jay.pedersen Type: enhancement | Status: assigned Priority: major| Milestone: snow-shrine-2 Component: data-stds|

Re: [gpc-informatics] #280: Medication ontology orgainzed by ingredient

#280: Medication ontology orgainzed by ingredient -+ Reporter: preeder | Owner: jay.pedersen Type: enhancement | Status: assigned Priority: major| Milestone: snow-shrine-2 Component: data-stds|

Re: [gpc-informatics] #280: Medication ontology orgainzed by ingredient

#280: Medication ontology orgainzed by ingredient -+ Reporter: preeder | Owner: jay.pedersen Type: enhancement | Status: assigned Priority: major| Milestone: snow-shrine-2 Component: data-stds|

Re: [gpc-informatics] #280: Medication ontology orgainzed by ingredient

#280: Medication ontology orgainzed by ingredient -+ Reporter: preeder | Owner: dconnolly Type: enhancement | Status: accepted Priority: major| Milestone: snow-shrine-1 Component: data-stds|

Re: [gpc-informatics] #280: Medication ontology orgainzed by ingredient

#280: Medication ontology orgainzed by ingredient -+ Reporter: preeder | Owner: ngraham Type: enhancement | Status: assigned Priority: major| Milestone: snow-shrine-1 Component: data-stds| Resolution:

Re: [gpc-informatics] #280: Medication ontology orgainzed by ingredient

#280: Medication ontology orgainzed by ingredient -+ Reporter: preeder | Owner: ngraham Type: enhancement | Status: assigned Priority: major| Milestone: snow-shrine-1 Component: data-stds| Resolution:

Re: [gpc-informatics] #280: Medication ontology orgainzed by ingredient

#280: Medication ontology orgainzed by ingredient -+ Reporter: preeder | Owner: ngraham Type: enhancement | Status: assigned Priority: minor| Milestone: data-domains3 Component: data-stds| Resolution: