--+
Comment (by campbell):
Changing routing on ticket 114 to copy GPC-DEV
Thanks Nathan G!
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on the current selection of LOINC codes which
are to be used in the queries. Once I know what the purpose and the
expected results are, I will comment on the SQL queries themselves.
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gpc-informatics http
| Keywords: standards, interoperation
Blocked By: | Blocking:
+---
Milestone 2.3 report draft for submission to PCORI
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a sample query to run through our model.
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By:
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Changes (by lv):
* status: new = accepted
Comment:
Call to discuss this is scheduled for 7/21. Updates to follow.
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, email) at
each data source who will be coordinating the ETL process. Please send
this contact information to ds...@pcornet.org by August 1.
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://pcornet.centraldesktop.com/c4gpc/folder/4029536/#folder:4029536
Methods Core Cohort Characterization]
Wendy, you might want to share your work there too.
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terminology will find
the relevant patients and data.
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) was submitted July 7.
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Keywords:| Blocked By: 109
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* milestone: data-stds-plan = popmednet
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biobank_flag = 'Y';
}}}
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enclosed a draft
revision of the PCORI form for discussion today
Jim
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', 'NI') sex
}}}
p.s. I was going to add this as an issue in
[https://bitbucket.org/njgraham/pcori-annotated-data-dictionary/ the code
repo]; what do you think about turning on the issue tracker there?
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:
- DevTeams#uthscsa : Angela
- DevTeams#wisc: Nathan Wilson
- DevTeams#mcw: Glenn
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* milestone: = data-agg1
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://pcornet.centraldesktop.com/c4gpc/file/33713907/ ETL Annotated
Data Dictionary for KUMC] to the PCORNet central desktop.
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/c4gpc/file/33714066/ draft of the
compliance worksheet for KUMC].
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-annotated-data-
dictionary/commits/all pcori-annotated-data-dictionary].
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with the relationships
- sequences of related encounters: normal results, abnormal, diagnosis,
treatment, normal
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--+
Comment (by lv):
Marshfield has a draft posted:
https://pcornet.centraldesktop.com/c4gpc/file/33747295/
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with numbers to:
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- Glenn
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://pcornet.centraldesktop.com/c4gpc/file/33770797/ CMH ETL Annotated
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the SCILHS stuff (Version 1.4 - 8/19/14) in
hopes of double-checking that we're in sync, but we didn't finish.
Nathan, over to you; let me know when you've done the next bit.
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of our discussion with Jim C.
and re-assign this to him?
ref:
- [http://listserv.kumc.edu/pipermail/gpc-dev/2014q3/000517.html gpc-dev
23 Sep meeting notes for review]
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: = fixed
Comment:
PCORI accepted our ETL ADDS
Singing off
Jim
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---+
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.
- [http://listserv.kumc.edu/pipermail/gpc-dev/2014q3/000373.html
Campbell 15 Aug]
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--+
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* blockedby: 17, 23, 67, 120 = 23
Comment:
we addressed enough of #17, #67, #120 for this work
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| Resolution:
Keywords:| Blocked By: 89
Blocking: 145, 146 |
--+
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* owner: ngraham = dconnolly
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on meds separately
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specifying a
modifier) you should be including patients who ever had an order recorded
in the Epic system for the selected medication(s) whether or not a
dispense was recorded.
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Comment (by gkowalski):
Tee hee ...
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clarity data?
Would you please share your SQL code? (or point me/us to it, if you
already have)
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concerns were relayed to the DSSNI TF. Do
you have a handy way to check?
Maybe it doesn't much matter, but it would be nice to know whether they
have already considered this input.
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as a result; you
might give it a try.
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to the site specifically for the Bioportal-to-i2b2 translations:
http://i2b2.bioontology.org/
And here's the link to the Bioportal API tool:
https://community.i2b2.org/wiki/display/NCBO/NCBO+Ontology+Tools
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|
-+-
Changes (by dconnolly):
* owner: hickman = huhickman
* status: new = assigned
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gpc-informatics http
/b14948170b242fa5c6e9c9d9b1b834ed8022ac33 b14948170b24/pcornet-
dm]
It's not quite in the form that I need for generating i2b2 metadata, so I
haven't merged this `cdm2x` branch.
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with pgadmin3 tool so the database is running correctly. I'm
connecting as user postgres
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all ::1/128 ident
}}}
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trust
hostall all 141.0.0.0/32trust
hostall all ::1/128 ident
}}}
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was not found
on this server./p
hr
addressApache/2.2.15 (CentOS) Server at 192.168.116.144 Port
80/address
/body/html
}}}
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wonder why I didn't have to do that. You'd think that we were running
**exactly** the same bits. You're definitely running i2b2vmware-1703a.zip
Version: 1.7.03a?
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there if you like, but the lack of it shouldn't
stop anything from working.
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the installation .
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http
:
Keywords:| Blocked By: 134, 179
Blocking: 119 |
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Really webclient.d.ts ? not webclient.d.js ?
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to this data builder stuff;
it's is a separate project now. See ticket:134#comment:5
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://www.typescriptlang.org/ typescript].
Probably dead code now.
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/html/webclient/js-
i2b2/cells/plugins/fsm/DFBuilder/tool_widgets_orig.js
and it worked .
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,
concepts: {keys: [i2b2_DIAG\\i2b2\\Diagnoses\\Endocrine disorders
(240-259)\\], names: [Endocrine disorders]}}[root@localhost deploy]#
}}}
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']
KeyError: 'username'
[root@localhost cdr2edc]#
}}}
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| Keywords:
Blocked By: 109 | Blocking:
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separating 2.x work out to reduce scope of #109
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change. I'm not inspired with a better summary just now,
though.
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.
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not sure whether our concerns were relayed to the DSSNI TF.
I gather Russ has taken this up with the PCORNet steering committee.
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for that design.
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answered your question?
Jim Campbell
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#comment:26) doesn't seem
to include the results under UNMC: Encounters. Do you plan to continue
working in that direction?
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?
Jim Campbell
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:
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* cc: gpc-dev@… (added)
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.
George has the ball to provide whatever revisions to BuilderSaga seem
worthwhile for documentation.
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roughly the same
way the targets `i2b2_vm_deploy.mk` are, since those targets are known to
result in a working system.
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From: Phillip Reeder [phillip.ree...@utsouthwestern.edu]
Sent: Wednesday, November 12, 2014 2:13 PM
To: gpc-dev@listserv.kumc.edu; campb...@unmc.edu; Dan Connolly
Cc: gpc-...@listserv.kuc.edu
Subject: Re: [gpc-informatics] #90: Diagnoses Modifiers for data
in the future.
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on your main branch soon?
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:
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the deployment but I'll have an updated
diagnosis ontology in December.
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#comment:17
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for researchers, as we do not have a local use case.
This level of granularity would also take a significant amount of
effort on the Cerner/CMH side to implement this proposed structure of
modifiers.
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Ticket URL:
http://informatics.gpcnetwork.org/trac/Project/ticket/90#comment:18
gpc
By: 127
Blocking: |
-+---
Comment (by bos):
Yes, there is no reason not to merge them, but I've got to resolve my
merge with ancestor issue.
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Ticket URL:
http://informatics.gpcnetwork.org/trac/Project/ticket/71#comment:12
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* status: reopened = assigned
Comment:
Justin volunteered 11 Nov (notes: #12) to try to reproduce Hubert's work.
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#comment:26
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of modifiers in the Diagnosis
Hierarchy:
- Problem status
- Active
- Deleted
- Resolved
p.s. thanks for the notes; more on meds separately
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URL: http://informatics.gpcnetwork.org/trac/Project/ticket/198
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(KeyGoalTracking#bc-survey) are in
flux, and in some versions, deploying the data builder at each site is
critical path. So conservatively, I'm moving this to that milestone.
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Ticket URL:
http://informatics.gpcnetwork.org/trac/Project/ticket/87#comment:68
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/Project/ticket/56#comment:21
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Campbell is reviewing my categories to ensure that they are in-line
with a clinician’s perspective. Based on Jim’s feedback, I will refine
and issue a testable code set to Hubert.
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Ticket URL:
http://informatics.gpcnetwork.org/trac/Project/ticket/158#comment:13
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