Re: [HCP-Users] Expected date of 1,200 subjects release?

2017-02-20 Thread David Van Essen
Karthik, We’re aiming for late this week, but if last-minute glitches arise it might stretch into next week. David > On Feb 20, 2017, at 1:33 PM, Gopalakrishnan, Karthik > wrote: > > Hi Jenn, > > Have any last-minute issues come up or is the S1200 release including

Re: [HCP-Users] 2016 Course Material Download

2017-02-20 Thread Elam, Jennifer
Hi Tim, PDFs of the lectures and practical instructions are now available on the 2016 Course website. Competing priorities have delayed the release of a 2016 virtual machine with all the software and data used

[HCP-Users] 2016 Course Material Download

2017-02-20 Thread Timothy Hendrickson
Hello, I am curious when I can expect the 2016 Course Material tutorial data to be available for download? Respectfully, -Tim Timothy Hendrickson Department of Psychiatry University of Minnesota Office: 612-624-6441 Mobile: 507-259-3434 (texts okay)

Re: [HCP-Users] Expected date of 1,200 subjects release?

2017-02-20 Thread Glasser, Matthew
It will happen when it happens… Peace, Matt. From: > on behalf of "Gopalakrishnan, Karthik" > Date: Monday, February 20, 2017 at 1:33 PM To: "Elam, Jennifer"

Re: [HCP-Users] Expected date of 1,200 subjects release?

2017-02-20 Thread Gopalakrishnan, Karthik
Hi Jenn, Have any last-minute issues come up or is the S1200 release including the bedpostx data going to happen this week? Thanks! Karthik From: hcp-users-boun...@humanconnectome.org [mailto:hcp-users-boun...@humanconnectome.org] On Behalf Of Elam, Jennifer Sent: Monday, February 13, 2017

Re: [HCP-Users] dMRI after eddy but before acpc-T1W

2017-02-20 Thread Philip A Cook
Hi, I believe the unwarped eddy output will be under Diffusion/eddy/eddy_unwarped_images.nii.gz https://github.com/Washington-University/Pipelines/blob/6e22e45a066df542660ad0cdb2e1cec6a373ecb4/DiffusionPreprocessing/scripts/run_eddy.sh#L523 > On Feb 2, 2017, at 10:08 AM, Szabolcs David

Re: [HCP-Users] Comparing ICA-FIX results to results without ICA-FIX

2017-02-20 Thread Glasser, Matthew
We have found that ICA+FIX does improve the HCP taskfMRI data. It reduces false positives/false negatives in the beta maps and increases Z statistics. For short tfMRI runs, I would recommend combining across runs so that ICA+FIX can better separate signal and noise and so that the clean up

Re: [HCP-Users] how to register the DTI T1 to the structure T1

2017-02-20 Thread Glasser, Matthew
Run the diffusion preprocessing pipeline. Peace, Matt. From: > on behalf of *signal > Date: Monday, February 20, 2017 at 8:45 AM To: hcp-users

[HCP-Users] Comparing ICA-FIX results to results without ICA-FIX

2017-02-20 Thread Poppe, Andrew
Hello, Our group is trying to decide if, and to what extent, using ICA-FIX improves GLM results in our data analysis. We analyzed the same data with the same models once using FIX prior to calculating stats and again without using FIX. We want to know how we might compare the two. One idea we

[HCP-Users] how to register the DTI T1 to the structure T1

2017-02-20 Thread *signal
Thank you for your time,I download and release the HCP pipeline v3.21.0 and it can implement the "structure preprocessing" step.And now I want to know how to register the DTI T1 to the structure T1.Where do I get the data?Your reply is highly appreciated.