Re: [HCP-Users] drawing borders

Thanks; drawing borders will be easier and more accurate with smaller sphere sizes _ gaurav patel gauravpa...@gmail.com pateldsclab.net > On Oct 10, 2018, at 6:45 PM, Timothy Coalson wrote: > > To clarify the phrasing: the existing release doesn't h

Re: [HCP-Users] drawing borders

this is the tutorial 1.0 brain (Q1-Q6_R440.R.veryinflated.32k_fs_LR.surf.gii). 2mm was actually much smaller than the current 3% standard for the adult brain. Are you able to reproduce the issue with the same surface? gaurav patel gauravpa...@gmail.com

Re: [HCP-Users] drawing borders

. I am drawing this on the tutorial surface gaurav patel gauravpa...@gmail.com pateldsclab.net > On Oct 9, 2018, at 1:07 PM, Harwell, John wrote: > > How huge is huge? When drawing a new border, the symbol size should be about > 3% of the longest

Re: [HCP-Users] drawing borders

In the borders menu? Changing that changes the size of the final border, but not the border as I draw it _ gaurav patel gauravpa...@gmail.com pateldsclab.net > On Oct 9, 2018, at 12:42 PM, Dierker, Donna wrote: > > Check the diameter of your spher

[HCP-Users] drawing borders

, so that setting doesn’t make a difference. Thanks gaurav patel gauravpa...@gmail.com pateldsclab.net ___ HCP-Users mailing list HCP-Users@humanconnectome.org http://lists.humanconnectome.org/mailman/listinfo/hcp-users

Re: [HCP-Users] Intensity Normalization 3_22

Well, that explains a lot. Ok, we’ll try it with SBRef set to NONE. Thanks gaurav patel gauravpa...@gmail.com pateldsclab.net > On Mar 29, 2018, at 4:32 PM, Glasser, Matthew <glass...@wustl.edu> wrote: > > You would need to use a mean image SBRef the

Re: [HCP-Users] HCP-Users Digest, Vol 64, Issue 2

Well, I guess that would be us every time we update our local installation. We’ll let you know how it goes gaurav patel gauravpa...@gmail.com pateldsclab.net > On Mar 2, 2018, at 2:30 PM, Glasser, Matthew <glass...@wustl.edu> wrote: > > Hi Gaura

Re: [HCP-Users] HCP-Users Digest, Vol 64, Issue 2

Yes…we’ve been 3.4 for many years without problems, and 3.22 only required those minor changes. We recently verified that it was easy to install and run on macs when we expanded the network of mac pros we use to run the HCP pipelines gaurav patel gauravpa...@gmail.com

Re: [HCP-Users] mcflirt_acc in ABCD

Yes that fits with what Juan and I have seen so far—no problems with our 2mm data, but sudden weirdness with 2.4mm data. We’ll try version 3.22 and let you know if we have further issues. Thanks __ gaurav patel gauravpa...@gmail.com www.neurofreak.net

Re: [HCP-Users] Fwd: Using multiple cores while running Structural Pipelines

The fMRIVolume pipeline also takes advantage of SGE through fslsub, and we hacked it to use condor as well--that allows for significant time savings on our end _ gaurav patel gauravpa...@gmail.com www.neurofreak.net > On Apr 27, 2017, at 2:29 PM, Glasser, Matt

Re: [HCP-Users] Fwd: Using multiple cores while running Structural Pipelines

__ gaurav patel gauravpa...@gmail.com www.neurofreak.net On Apr 27, 2017, at 9:44 AM, Harms, Michael wrote: > > The number of windows you use to launch the processing is irrelevant. But if > you only have 8 cores on your machine, and only want to use 7 of them, you >

Re: [HCP-Users] MRI parameters

of the MPRAGE on our scanner, so hopefully soon we'll see if that solves the problem. __ gaurav patel gauravpa...@gmail.com www.neurofreak.net On Nov 27, 2015, at 1:15 PM, Harms, Michael wrote: > > Please cc the list, so that others can respond and benefi

Re: [HCP-Users] Myelin mapping with FLAIR

and are able to run some tests, we'll post the results __ gaurav patel gauravpa...@gmail.com www.neurofreak.net On Nov 19, 2015, at 11:27 AM, Barbara Kreilkamp wrote: > Dear all, > > We've now been able to acquire a sagittal B1-Map from the GE templates > p

Re: [HCP-Users] myelin maps on GE scanner

I also spoke to our sequence programmer about getting B1 receive and transmit field measurements here, and he said he thought we had the necessary sequences. I'll let you know what happens __ gaurav patel gauravpa...@gmail.com www.neurofreak.net On Jun 1, 2015

Re: [HCP-Users] myelin maps on GE scanner

. __ gaurav patel gauravpa...@gmail.com www.neurofreak.net On May 31, 2015, at 4:21 PM, Glasser, Matthew glass...@wusm.wustl.edu wrote: Hi Barbara, I agree that the main heavily myelinated areas are found, the issue is with that lateral cortex (e.g

[HCP-Users] myelin maps on GE scanner

or insight would be appreciated. Thanks! __ gaurav patel gauravpa...@gmail.com www.neurofreak.net ___ HCP-Users mailing list HCP-Users@humanconnectome.org http://lists.humanconnectome.org/mailman/listinfo/hcp-users

Re: [HCP-Users] SBref Distortion Correction

to be roughly inverted versions of 4-6. Would it help for me to attach the images in a separate email? Thanks __ gaurav patel gauravpa...@gmail.com www.neurofreak.net On May 26, 2015, at 3:19 PM, Glasser, Matthew wrote: Are there only two of those files

Re: [HCP-Users] SBref Distortion Correction

Hmmm...no I don't think so. Will do and let you know __ gaurav patel gauravpa...@gmail.com www.neurofreak.net On May 22, 2015, at 3:32 PM, Glasser, Matthew glass...@wusm.wustl.edu wrote: Hi Gaurav, Did you look at all 3 warpfield volumes (the second volume

Re: [HCP-Users] SBref Distortion Correction

be appreciated. Thanks! _ gaurav patel gauravpa...@gmail.com www.neurofreak.net On May 22, 2015, at 3:00 PM, Glasser, Matthew glass...@wusm.wustl.edu wrote: It helps to reply to the previous e-mail chain so that all of the info on a question is in one place

Re: [HCP-Users] General Electric Fieldmaps

the real fieldmap, so there's no need to use those parameters in the HCP scripts. Sorry for the error, its been a while since I've thought about this. Let me know if you need any other details __ gaurav patel gauravpa...@gmail.com www.neurofreak.net On Apr 1, 2015

Re: [HCP-Users] General Electric Fieldmaps

for us. If your scanner can only give you complex/imaginary images, then the script I've written won't work unfortunately. __ gaurav patel gauravpa...@gmail.com www.neurofreak.net On Mar 31, 2015, at 5:35 AM, Benjamin Garzon wrote: Dear all, I'm trying to use

Re: [HCP-Users] freesurfer errors

ok thanks...I was wondering how you guys handle errors like these? Or are your data so awesome that it never happens? ;-) __ gaurav patel gauravpa...@gmail.com www.neurofreak.net On Oct 24, 2014, at 2:46 PM, Harms, Michael wrote: Hi Gaurav

Re: [HCP-Users] freesurfer errors

Thanks...we'll be bring the subject back so we'll reacquire anatomy then and see what happens __ gaurav patel gauravpa...@gmail.com www.neurofreak.net On Oct 24, 2014, at 3:04 PM, Harms, Michael mha...@wustl.edu wrote: It's not that errors in the surfaces

Re: [HCP-Users] freesurfer errors

check with our sequence programmer. Do you? __ gaurav patel gauravpa...@gmail.com www.neurofreak.net On Oct 24, 2014, at 3:04 PM, Glasser, Matthew glass...@wusm.wustl.edu wrote: Is that image you initially sent one of the down sampled FreeSurfer images

[HCP-Users] wb_command

reading column 1, row 1. Is this the way that cifti-roi-average is supposed to behave, only accepting metric ROI files? Thanks! __ gaurav patel gauravpa...@gmail.com www.neurofreak.net ___ HCP-Users mailing list HCP

Re: [HCP-Users] wb_command

Ok thanks! _ gaurav patel gauravpa...@gmail.com www.neurofreak.com On May 2, 2014, at 4:24 PM, Glasser, Matthew glass...@wusm.wustl.edu wrote: This feature has already been requested for this command. Peace, Matt. On 5/2/14, 3:21 PM, Gaurav Patel