Hello,
I am trying to understand how the “- - biascorrection=SEBASED” option in the
GenericfMRIVolumeProcessingPipeline.sh works.
Could someone refer me to a paper on how the bias field can be estimated from a
spin echo and a gradient echo?
Which images are used for the gradient echo?
Many
;
JSESSIONID;echo $JSESSIONID
I hope this helps. Note, I didn’t include the file Tim mentioned that you
would already in your download folders.
Regards,
Mike
From:
hcp-users-boun...@humanconnectome.org<mailto:hcp-users-boun...@humanconnectome.org>
[mailto:hcp-users-boun...@humanconnectom
<tsc...@mst.edu<mailto:tsc...@mst.edu>> wrote:
Yes, the newest pipelines used an option that isn't in the 1.2.3 release. Grab
the "dev_latest" zip file that matches your OS from here:
http://brainvis.wustl.edu/workbench/
Tim
On Mon, Mar 12, 2018 at 5:57 PM, Viessman
Hello,
I am running the PostFreeSurferPipeLineBatch.sh script from the
Pipelines/Examples/Scripts/ on the example subject 100307. I've successfully
tun the PreFreeSurfer and FreeSurfer scripts, but ran into the following
problem with the PostFreeSurfer script when it calls wb_command
I get
Dear Tim,
thanks a lot for the detailed explanation, this is all tremendously helpful and
is indeed what I am looking for.
I hope someone on this list knows where the transforms are stored. As soon as I
know from where to download it I will give it a try and let you know if it
worked.
Thanks
t;> wrote:
That will contain an incomplete EPI to T1w registration because we preregister
with FSLBBR. Why do you need this transform in this format?
Peace,
Matt.
From:
<hcp-users-boun...@humanconnectome.org<mailto:hcp-users-boun...@humanconnectome.org>>
on behalf of "Vi
Hello,
I would like to retrieve the bbregister .dat file from the EPI to T1w
registration but don't know its exact path.
>From the shell scripts on github
>(Pipelines/fMRIVolume.scripts/DistortionCorrectionAndEPIToT1wReg_FLIRTBBRAndFreeSurferBBRbased.sh)
I found out that the file I am
