Re: [HCP-Users] eddy_parameters file

2015-10-16 Thread Glasser, Matthew
I don't think they are in the packages, but they ought to be for folks interested in the same question you are. Perhaps someone from the OT-7 group can explain how you could extract the files via the REST command line interface. Peace, Matt. From:

Re: [HCP-Users] eddy_parameters file

2015-10-16 Thread Glasser, Matthew
I don't know about that, but it was an oversight to leave this file out, as I had intended for it to be available. From Glasser et al 2013 Pipelines paper: "All these distortions are corrected in a single resampling step using the "eddy" tool in FSL5 (Andersson et al., 2012; Sotiropoulos it et

Re: [HCP-Users] eddy_parameters file

2015-10-16 Thread Harms, Michael
This might be something that it would be worthwhile for us to process once and then make available to everyone, possibly via a simple spreadsheet initially, but hopefully incorporated into the database as a variable at some later point.  Along those lines, is there an existing script