Re: [HCP-Users] Error during Field Map Preprocessing and Gradient Unwarping in the Functional Volume Pipeline

fsl_prepare_fieldmap is an unmodified FSL script that is called by the HCP Pipelines. I would ask on the FSL mailing list about that. You could try testing that script outside of the HCP Pipelines by using these commands line on the files: ${FSLDIR}/bin/fslmaths ${MagnitudeInputName} -Tmean

[HCP-Users] Error during Field Map Preprocessing and Gradient Unwarping in the Functional Volume Pipeline

Hello, I encountered a weird error while trying to run the FunVol Pipeline. After the motion correction is done I get this: START: Field Map Preprocessing and Gradient Unwarping (standard_in) 1: parse error (standard_in) 1: parse error (standard_in) 1: parse error (standard_in) 1: parse

Re: [HCP-Users] hcp_fix and correlation maps

If you want to explore the functional connectivity, you can do that by loading the dtseries into Connectome Workbench and selecting the dyconn layer and clicking on the surface or in the subcortical grey matter in the volume. Is this what you are after or something else? Peace, Matt. From:

Re: [HCP-Users] hcp_fix and correlation maps

Exactly Matt, in principal what you explained below is what we need. The wb_view only accepts spec or scene files (unless I am misunderstanding) and not sure how to build or properly add dyconn layer, dtseries, projecting onto cortical and subcritical ROI layers or grayordinates. We are still

Re: [HCP-Users] hcp_fix and correlation maps

You just go to file menu open file and change to different file types. Peace, Matt. From: Osama Abdullah > Date: Thursday, April 6, 2017 at 8:34 PM To: Matt Glasser > Cc: