Hi Michael,
My initial interest was in comparing aggressive vs. soft regression of the
noise ICs. When I tried simply regressing them out using fsl_regfilt with and
without the -a flag, though, I realized that my soft denoised file didn't match
the HCP denoised file, so this became more of an
Thanks Steve, that's good to keep in mind. Our acquisition is a single
"HCP-like" 15 minute run at MB6, 2.1mm isotropic resolution, TR=1s, AP phase
encoding, 32-channel head coil on a 3T Skyra; hopefully that gives us a similar
temporal profile. Sounds like I should compare our temporal
Making a "nifti version" isn't a simple conversion, as some lengthy
conversations on this list have elaborated on.
The good news: if you want a single-subject-specific version, that is
possible, using -cifti-separate and -label-to-volume-mapping, using the
subject's own surfaces.
The bad news:
You might want to compare them to the T1 in an example subject (and perhaps
also volume surface outline for pial), to see what is really going on. The
pial surfaces of the two hemispheres shouldn't overlap outside the medial
wall.
Are you mapping to the structural volume resolution, or to the
Hi Peter,
The data for the new parcellation are available in the BALSA database, see this
thread: http://www.mail-archive.com/hcp-users@humanconnectome.org/msg02876.html
We recommend using the included Connectome Workbench scene file to conveniently
view the data in the wb_view part of the
Dear HCP team,
Is it possible to download a nifti version of the Glasser atlas featured
recently in nature?
Thanks
bw
Peter
___
HCP-Users mailing list
HCP-Users@humanconnectome.org
http://lists.humanconnectome.org/mailman/listinfo/hcp-users
Glad you got it all figured out. I’m curious though: was this exercise just
to understand the various steps internal to FIX (and hcp_fix) or is there some
more fundamental reason that you can't use those actual scripts for your
processing?
cheers,
-MH
--
Michael Harms, Ph.D.
The lack of a field map is the larger issue, as it makes accurately registering
the EPI to the T1w image problematic. Some folks have made use of an "average
field map" to attempt to improve upon this situation, but I don't have this
code or personal experience with this.
Lacking the T2w
Hi Greg,
Thank you very much for your detailed response!
I have now generated a Movement_Regressors.mat file with the correct 24
parameters (6 rigid body, 6 derivatives, 6 rigid body squared, 6 derivatives
squared). As I didn't have code handy to run highpass filtering on the movement
