[HCP-Users] Structural connectome analysis with tractography

Dear HCP experts, I attempted the structural connectome tutorial using the individual HCP dataset (100307) with MRtrix. I am looking to repeat a similar 'whole-brain' tractography analysis using FSL probtrackx. Specifically, I would like to utilize the freesurfer aparc+aseg file as nodes for

Re: [HCP-Users] Where to find dconn file after running both fMRIvolume and fMRIsurface

What pipelines did you run on this data? Peace, Matt. From: > on behalf of Joey Contreras > Date: Tuesday, October 24, 2017 at 5:45 PM To:

[HCP-Users] Where to find dconn file after running both fMRIvolume and fMRIsurface

Hello I have acquired resting state AP, PA data and have ran it through functional HCP pipeline. I am looking to load and analyze in connectome workbench but cannot find the .dconn or deserves.nii files. Would I have had to run another script to generate these files? Specifically I had hoped

Re: [HCP-Users] Merging a gifti file

For a quick introduction to CIFTI, see FAQ #1: https://wiki.humanconnectome.org/display/PublicData/HCP+Users+FAQ You may also want to read wb_command -cifti-help, while some of it is redundant with the FAQ, it also explains things you need to know about when using cifti commands in wb_command:

Re: [HCP-Users] Merging a gifti file

GIFTI is really only for single structures. CIFTI is for combinations across structures. Perhaps you should create a CIFTI file with wb_command -cifti-create-dense-timeseries. Peace, Matt. From: > on

[HCP-Users] Merging a gifti file

Hi, I'd like to merge two gifti files, each of format 32K x t timepoints. I'd like the output to be 64K x t timepoints, so basically concatenating the first dimension. My understanding is that wb_command -metric-merge doesn't acomodate this. Is there anything else I can try? I tried converting to

[HCP-Users] Source-MEG Resting state data

Hi, As I was exploring your data, especially the Source-MEG time series, I noticed the time-series’ length is 14960 pts for each vertex. However, at the channel-level analysis, the time series are of 140 000 pts, with fs of 1034 Hz. I would like to know why the number of points at the source

Re: [HCP-Users] Are participants' eyes open or closed in Language task?

Hi Meizhen, Participants completed the Language task eyes open as in all the HCP tfMRI. Greg, can you speak to any important considerations or effects? Best, Jenn Jennifer Elam, Ph.D. Scientific Outreach, Human Connectome Project Washington University School of Medicine Department of

Re: [HCP-Users] about the hcp data

Thanks very much! -- 原始邮件 -- 发件人: "Harms, Michael" ; 发送时间: 2017年10月24日(星期二) 22:35 收件人: "罗" <963619...@qq.com>; 抄送: "hcp-users" ; 主题: Re: [HCP-Users] about the hcp data Yes, all 1113 subjects with MR data

Re: [HCP-Users] ETA for reprocessing of 7T preprocessed fMRI volume data

Hi David, Thanks for the reply and the explanation, glad to hear it is coming along and sorry for the technical issues. Bryan. On 24/10/2017 13:58, David Van Essen wrote: > Bryan et al. > > Apologies for the delay in releasing the reprocessed 7T data. In > brief, it’s still not done, and it

Re: [HCP-Users] about the hcp data

Yes, all 1113 subjects with MR data in the S1200 release are available to use. There are a small number of issues that we discovered in the S500 (and S900) release data after the initial release, which were fixed as part of those subjects’ data for the S1200 release. See here for the details:

Re: [HCP-Users] about the hcp data

I'm sorry. I question is that whether all the 1113 subjects with MRI are available for our research, because some s500 subjects are not included in our brought S500 connectome box. Thanks. -- 原始邮件 -- 发件人: "Harms, Michael" ; 发送时间:

Re: [HCP-Users] about the hcp data

Hi, Can you rephrase your question? Are you asking if the S1200 data release is available for purchase as part of the “Connectome in a Box” program? If so, the answer is yes: https://store.humanconnectome.org/data/ cheers, -MH -- Michael Harms, Ph.D.