That feature isn’t yet in the released wb_command.
Try using the latest “released” version of the Pipelines from GitHub, rather
than the master branch.
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Michael Harms, Ph.D.
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Associate Professor of Psychiatry
Washington University
Hi,
I am trying to run the PostFreeSurfer step using the latest Pipelines-master
(downloaded today 04 April 2018 from github) but I get an error while running
the script FreeSurfer2CaretConvertAndRegisterNonlinear.sh: ERROR: Unexpected
parameter: -local-affine-method
It seems the wb_command
Dear Matthew,
Thank you very much for your detailed explanation!
1. The current situation of our study is that, we used the HCP MMP1.0 atlas to
sample the tfMRI data in order to localize specific functional areas. Since the
HCP MMP1.0 is in the MNI space, we used
1. Files in ${StudyFolder}/${Subject}/T1w are in subject’s physical space and
files in ${StudyFolder}/${Subject}/MNINonLinear are in MNI standard space.
Surfaces without MSMAll are registered with MSMSulc and surfaces with MSMAll
are registered with MSMAll. In general MSMAll will have better
Dear Matthew,
Thank you very much for your kind reply!
Could I continue asking two more new questions?
1. In the preprocessed structural data, both the
/${Subject}/T1w/fsaverage_LR32k and /${Subject}/MNINonLinear/fsaverage_LR32k
contain white surface files with the same names, such as
