Re: [HCP-Users] HCP-Users] Extracting mean relative motion from XNAT

2019-03-29 Thread Glasser, Matthew
I think you can use this file: ${StudyFolder}/${Subject}/MNINonLinear/Results/${fMRIName}/Movement_RelativeRMS.txt Matt. From: mailto:hcp-users-boun...@humanconnectome.org>> on behalf of Martina Jonette Lund mailto:m.j.l...@medisin.uio.no>> Date: Friday, March 29, 2019 at 9:39 AM To: "hcp-use

Re: [HCP-Users] Question on fsl 6.0.1

2019-03-29 Thread Glasser, Matthew
We expect these to work together however. These announcements were made on the various lists over the past couple of weeks. Matt. On 3/29/19, 1:10 PM, "hcp-users-boun...@humanconnectome.org on behalf of Harms, Michael" wrote: > >The MR-FIX releases as part of HCPpipelines v4.0.0 should work wi

Re: [HCP-Users] problems to download the tutorial data set

2019-03-29 Thread Hodge, Michael
Hi Vanessa, I'm hoping this is a transient issue, as there isn't a general problem with the file. It's actually in the same project and directory as the GroupAvg resource that seemed to be downloading successfully, according to your screenshot. The same permissions should apply, and I'm abl

Re: [HCP-Users] Question on fsl 6.0.1

2019-03-29 Thread Harms, Michael
The MR-FIX releases as part of HCPpipelines v4.0.0 should work with FSL 6.0.1. As far as MSMAll and FSL 6.0.1, to my knowledge, we haven't explicitly tested that combination yet. Cheers, -MH -- Michael Harms, Ph.D. --- Associate Profess

[HCP-Users] Question on fsl 6.0.1

2019-03-29 Thread Marta Moreno
Dear Experts, Is FSL 6.0.1 ready for MR ICA+FIX and MSMAII? I have not seen any post yet in here. Thanks, Leah. Sent from my iPhone ___ HCP-Users mailing list HCP-Users@humanconnectome.org http://lists.humanconnectome.org/mailman/listinfo/hcp-users

[HCP-Users] question on fsl 6.0.1

2019-03-29 Thread Marta Moreno
Dear Experts, Is FSL 6.0.1 ready for MR ICA+FIX and MSMAII? I have not seen any post. Thanks, Leah. ___ HCP-Users mailing list HCP-Users@humanconnectome.org http://lists.humanconnectome.org/mailman/listinfo/hcp-users

[HCP-Users] HCP-Users] Extracting mean relative motion from XNAT

2019-03-29 Thread Martina Jonette Lund
Dear HCP experts, I am working on the processed rsfMRI data that is part of the HCP1200_Parcellation_Timeseries_Netmats package, and I have a question regarding extraction of mean relative motion for these subjects. I want to include mean relative motion as a covariate in my analysis but I am