t; *To: *Leonardo Tozzi , NEUROSCIENCE tim <
> tsc...@mst.edu>
> *Cc: *Stamatios Sotiropoulos ,
> hcp-users
>
> *Subject: *Re: [HCP-Users] Diffusion connectivity matrix with cortical
> and subcortical parcellation
>
>
>
> I think that --omatrix1 always outp
c: Matt Glasser mailto:glass...@wustl.edu>>, Stamatios
Sotiropoulos
mailto:stamatios.sotiropou...@ndcn.ox.ac.uk>>,
hcp-users mailto:hcp-users@humanconnectome.org>>
Subject: Re: [HCP-Users] Diffusion connectivity matrix with cortical and
subcortical parcellation
Dear Timothy,
Exactly
| (650) 5615738
>
>
>
>
>
> *From: *Timothy Coalson
> *Date: *Friday, November 9, 2018 at 5:02 PM
>
> *To: *Leonardo Tozzi
> *Cc: *"Glasser, Matthew" , Stamatios Sotiropoulos <
> stamatios.sotiropou...@ndcn.ox.ac.uk>, hcp-users <
> hcp-users@h
tamatios.sotiropou...@ndcn.ox.ac.uk>>,
hcp-users mailto:hcp-users@humanconnectome.org>>
Subject: Re: [HCP-Users] Diffusion connectivity matrix with cortical and
subcortical parcellation
Dear Timothy,
Exactly, the goal was to have a structural connectome that has the same parcels
:02 PM
To: Leonardo Tozzi
Cc: "Glasser, Matthew" , Stamatios Sotiropoulos
, hcp-users
Subject: Re: [HCP-Users] Diffusion connectivity matrix with cortical and
subcortical parcellation
So, it gets a little complicated, because you have to be careful about what
order the different sections o
gt;>, Stamatios
Sotiropoulos
mailto:stamatios.sotiropou...@ndcn.ox.ac.uk>>,
hcp-users mailto:hcp-users@humanconnectome.org>>
Subject: Re: [HCP-Users] Diffusion connectivity matrix with cortical and
subcortical parcellation
So, it gets a little complicated, because you have to be careful a
;
>
>
> Leonardo Tozzi, MD, PhD
>
> Williams PanLab | Postdoctoral Fellow
>
> Stanford University | 401 Quarry Rd
> <https://maps.google.com/?q=401+Quarry+Rd=gmail=g>
>
> lto...@stanford.edu | (650) 5615738
>
>
>
>
>
> *From: *Timothy Coalson
gt;>, Stamatios
Sotiropoulos
mailto:stamatios.sotiropou...@ndcn.ox.ac.uk>>,
hcp-users mailto:hcp-users@humanconnectome.org>>
Subject: Re: [HCP-Users] Diffusion connectivity matrix with cortical and
subcortical parcellation
Dear Timothy,
Thank you very much for your quick response
ford.edu>>, Stamatios
Sotiropoulos
mailto:stamatios.sotiropou...@ndcn.ox.ac.uk>>,
"hcp-users@humanconnectome.org<mailto:hcp-users@humanconnectome.org>"
mailto:hcp-users@humanconnectome.org>>
Subject: Re: [HCP-Users] Diffusion connectivity matrix with cortical and
s
e: *Thursday, November 8, 2018 at 6:48 PM
> *To: *Leonardo Tozzi , Stamatios Sotiropoulos <
> stamatios.sotiropou...@ndcn.ox.ac.uk>, "hcp-users@humanconnectome.org" <
> hcp-users@humanconnectome.org>
>
> *Subject: *Re: [HCP-Users] Diffusion connectivity mat
o: Stamatios Sotiropoulos
mailto:stamatios.sotiropou...@ndcn.ox.ac.uk>>,
"hcp-users@humanconnectome.org<mailto:hcp-users@humanconnectome.org>"
mailto:hcp-users@humanconnectome.org>>
Subject: Re: [HCP-Users] Diffusion connectivity matrix with cortical and
subcortical parcellati
matios Sotiropoulos
Date: Wednesday, October 31, 2018 at 1:38 AM
To: "hcp-users@humanconnectome.org"
Cc: Leonardo Tozzi
Subject: Re: [HCP-Users] Diffusion connectivity matrix with cortical and
subcortical parcellation
Hi
The HCP course tractography practical would be a good way to star
ber 31, 2018 at 1:38 AM
To: "hcp-users@humanconnectome.org"
Cc: Leonardo Tozzi
Subject: Re: [HCP-Users] Diffusion connectivity matrix with cortical and
subcortical parcellation
Hi
The HCP course tractography practical would be a good way to start (see page
386 onwards):
https://wus
files.
Matt.
From: Leonardo Tozzi mailto:lto...@stanford.edu>>
Date: Tuesday, October 30, 2018 at 6:34 PM
To: Matt Glasser mailto:glass...@wustl.edu>>
Subject: Re: [HCP-Users] Diffusion connectivity matrix with cortical and
subcortical parcellation
Dear Matthew,
Thank you for the v
files.
Matt.
From: Leonardo Tozzi mailto:lto...@stanford.edu>>
Date: Tuesday, October 30, 2018 at 6:34 PM
To: Matt Glasser mailto:glass...@wustl.edu>>
Subject: Re: [HCP-Users] Diffusion connectivity matrix with cortical and
subcortical parcellation
Dear Matthew,
Thank you for the v
uesday, October 30, 2018 at 6:34 PM
> To: Matt Glasser
> Subject: Re: [HCP-Users] Diffusion connectivity matrix with cortical and
> subcortical parcellation
>
> Dear Matthew,
>
>
>
> Thank you for the very quick response.
>
> So for clarification, you would use the fo
Also use the label ones to make GIFTI label files.
Matt.
From: Leonardo Tozzi mailto:lto...@stanford.edu>>
Date: Tuesday, October 30, 2018 at 6:34 PM
To: Matt Glasser mailto:glass...@wustl.edu>>
Subject: Re: [HCP-Users] Diffusion connectivity matrix with cortical and
subcortical
ate: Tuesday, October 30, 2018 at 6:19 PM
To: "hcp-users@humanconnectome.org<mailto:hcp-users@humanconnectome.org>"
mailto:hcp-users@humanconnectome.org>>
Subject: [HCP-Users] Diffusion connectivity matrix with cortical and
subcortical parcellation
To Whom it may conce
To Whom it may concern,
I have created a dlabel file by adding to the Glasser Parcellation from BALSA
the subcortical regions of the Freesurfer atlas.
Now my goal would be to run a tractography analysis and obtain structural
connectivity matrices using this cortical+subcortical parcellation.
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