Re: [Ifeffit] iXAFS xQuartz

2014-10-16 Thread Bruce Ravel
On 10/15/2014 11:00 AM, Gaspard Jean-Pierre wrote: Hi all, On a MacBook under OS X.8.5, I downloaded iXAFS and xQuartz. I start xQuartz. When I try to start iXAFS, it requests X11 that is obviously active, I see it. However iXAFS says : X11 is not installed. I am missing something but I do not

[Ifeffit] iXAFS xQuartz

2014-10-15 Thread Gaspard Jean-Pierre
Hi all, On a MacBook under OS X.8.5, I downloaded iXAFS and xQuartz. I start xQuartz. When I try to start iXAFS, it requests X11 that is obviously active, I see it. However iXAFS says : X11 is not installed. I am missing something but I do not know what. Regards JP

[Ifeffit] iXAFS on Mountain Lion

2012-11-21 Thread Weng, Tsu-Chien
Hi, I had problem launching iXAFS on Mountain Lion after the OS upgrade. It seems the path to X11 might be hard wired in the program. Here is my workaround solution by creating a symbolic link to XQuartz. It might be worth sharing the trick. 1. Install XQuartz 2.7.4 from

[Ifeffit] iXAFS

2010-11-29 Thread George Sterbinsky
Hi, I am wondering what is the best way to uninstall iXAFS version 2.1.1 for Leopard before installing the new version. Is it sufficient to just drag iXAFS.app to the trash or is there a better way to make sure everything gets removed? Thank you, George

Re: [Ifeffit] iXAFS

2010-11-29 Thread Jeff Terry
That should work fine. Alternately, you the new version should overwrite the old if you drag it to the Applications folder. Sent from my iPhone On Nov 29, 2010, at 9:05 AM, George Sterbinsky georgesterbin...@u.northwestern.edu wrote: Hi, I am wondering what is the best way to uninstall

Re: [Ifeffit] iXAFS

2010-11-29 Thread George Sterbinsky
After downloading the iXAFS3.0.3.dmg from http://cars9.uchicago.edu/ifeffit/Downloads; and installing iXAFS, I find that if I open iXAFS look at about iXAFS, it tells me that I have version 2. Is this just a case of confusing labeling, or has some aspect of my installation gone awry? Thank you,

Re: [Ifeffit] iXAFS

2010-11-29 Thread Matt Newville
Hi George, The 'About' screen didn't get changed. I did very little to Jeff and Ken's outer Cocoa layer. I'll try to fix that, but it's probably not worth a new install. The main thing to check is whether Athena is the right version (0.8.061). Like Jeff said, iXAFS 2 and 3 do nothing to the

Re: [Ifeffit] iXAFS

2010-11-29 Thread Jeff Terry
Probably bad labeling as mine is version 2(2.2). Jeff On Nov 29, 2010, at 10:52 AM, George Sterbinsky wrote: After downloading the iXAFS3.0.3.dmg from http://cars9.uchicago.edu/ifeffit/Downloads; and installing iXAFS, I find that if I open iXAFS look at about iXAFS, it tells me that I

Re: [Ifeffit] iXAFS 3.0.3 for Mac OS X (Brandon Reese)

2010-09-23 Thread Brugger, Joel (SAM)
Hi Brandon, Did you actually test the python module (i.e. Use python scripting to control arthemis?) On 10.6.4, I've obtain the following error: bash-3.2$ python Python 2.6.1 (r261:67515, Dec 17 2009, 00:59:15) [GCC 4.2.1 (Apple Inc. build 5646)] on darwin Type help, copyright, credits

Re: [Ifeffit] iXAFS 3.0.3 for Mac OS X (Brandon Reese)

2010-09-23 Thread Matt Newville
Hi Joel, Hmm, I'm not sure what's going on for you. It definitely works for me: mbook:~$ . ~/Desktop/iXAFS.app/Contents/Resources/local/bin/iff_init.sh mbook:~$ python Python 2.6.5 (r265:79359, Mar 24 2010, 01:32:55) [GCC 4.0.1 (Apple Inc. build 5493)] on darwin Type help, copyright,

Re: [Ifeffit] iXAFS 3.0.3 for Mac OS X (Brandon Reese)

2010-09-23 Thread Brandon Reese
Hi Joel, I did not test the python module. I just tested the function of Artemis/Athena from the iXAFS window and work great. Thanks again for that! I gave it try from both the iXAFS shell and regular bash terminal and got this error (I am using 10.5.8)... bash-3.2$ python Python 2.5.4

Re: [Ifeffit] iXAFS 3.0.3 for Mac OS X

2010-09-21 Thread Brandon Reese
Hi Matt, Just got around to trying out the new iXAFS 3.0.3 build on my 10.5 (Intel) Mac. Interestingly enough the app ran fine for me without doing anything with the Pyhton module you linked. Although I had the old beta version of iXAFS installed and have attempted at least one source build, so

[Ifeffit] iXAFS 3.0.3 for Mac OS X

2010-09-19 Thread Matt Newville
Hi All, OK, sorry for the delay, but I think that http://cars9.uchicago.edu/~ifeffit/src/iXAFS3.0.3.dmg should now work well for both Mac OS X 10.6 and 10.5. That is, all the applications launch for me on a 10.6.5 machine and a 10.5.8 machine, and seem to work as expected. I'll try this on

[Ifeffit] iXAFS for Mac OS X

2010-09-03 Thread Matt Newville
Hi Folks, With help from Ken McIvor and Jeff Terry, I've built a new version of iXAFS for Mac OS X. This version should be considered experimental, but for the brave and/or foolhardy please try it out and let us know how it works. This version offers the latest versions of Athena, Artemis, and

Re: [Ifeffit] iXAFS for Mac OS X

2010-09-03 Thread Jeff Terry
Hi All, If you have been using the iXAFS Shell for command line access, note that it is currently not working in this version. Jeff On Sep 3, 2010, at 10:08 PM, Matt Newville wrote: Hi Folks, With help from Ken McIvor and Jeff Terry, I've built a new version of iXAFS for Mac OS X.

Re: [Ifeffit] iXAFS for OS X 10.6

2010-01-26 Thread Paul Fons
Hi Jeff, Hello from a sunny and warm Japan. I would love to upgrade to snow leopard... but ixafs is a must have for me hence I am still at 10.5. Would it be possible to test whatever version you have ready on my mac? So long as I can select a file from X11 and fit stuff, any

Re: [Ifeffit] iXAFS for OS X 10.6

2010-01-24 Thread フォンス ポール
Hi Jeff, (A somewhat belated) happy new year. I was at the APS recently and it so happened that Bruce was using sector 20 right before me. I was curious about the version of ixafs for snow leopard and if there was any way that I might be of some help to you (Bruce mentioned your

Re: [Ifeffit] Ifeffit/iXAFS won't launch in OS 10.6 (Snow Leopard)

2009-09-16 Thread Ken McIvor
Paul, Thanks for the information! Jeff and I are hoping to have the opportunity to work on a fix sooner rather than later. From the sound of things we may be able to avoid Heroic Measures. The hope is to slip by with something like wrapper scripts for athena et alia that invoke the

Re: [Ifeffit] Ifeffit/iXAFS won't launch in OS 10.6 (Snow Leopard)

2009-09-14 Thread Paul Fons
The problem with iXAFS is that it is attempting to run a 32 bit version of perl contained within the application in a 64 bit process. The new version of perl that ships with Snow Leopard is 5.10.0. I pasted the error message from the ixafs shell below. The solution would seem to be to

Re: [Ifeffit] Ifeffit/iXAFS won't launch in OS 10.6 (Snow Leopard)

2009-09-09 Thread Jeff Terry
Hi All, We will take a look at this when we get a 10.6 machine. Jeff On Sep 8, 2009, at 4:11 PM, Joel Kelly wrote: Hello, I recently upgraded to OS 10.6 (snow leopard) on my intel Mac. It comes with version 2.3.4 of X11. Now, I can't seem to run any of the Horae GUI applications! I've

[Ifeffit] IXAFS for Mac OSX - Problem launching Artemis

2008-05-23 Thread Dean Hesterberg
Hello, For months, I have been happily using IXAFS for Mac OSX - excellent program! I am now having problems launching Artemis. An Aquaterm graphics window opens, but the actual Artemis program does not. If I keep trying, periodically Artemis appears as if it will launch, but the

Re: [Ifeffit] iXAFS 2 beta 1 released

2007-12-07 Thread Hind Al-Abadleh
Hi Jeff, This is great news. I downloaded the beta version, and got the error message Apple's X11 for Mac OSX is not installed So, I downloaded the latest update for X11 from Apple's website from this page: http://www.apple.com/downloads/macosx/apple/macosx_updates/x11update2006113.html

Re: [Ifeffit] iXAFS 2 beta 1 released

2007-12-07 Thread Jeff Terry
Hind, X11 would be in /Applications/Utilities/ You should install X11 off of your 10.4 DVD and then apply the update. Jeff On Dec 7, 2007, at 5:42 AM, Hind Al-Abadleh wrote: Hi Jeff, This is great news. I downloaded the beta version, and got the error message Apple's X11 for Mac OSX is

Re: [Ifeffit] iXAFS 2 beta 1 released

2007-12-07 Thread Hind Al-Abadleh
Thanks Jeff and Matt for your timely reply. The software runs just fine now. Hind Hind A. Al-Abadleh, Ph.D. Assistant Professor Chemistry Department, Wilfrid Laurier University Science Building 3020F 75 University Ave. W. Waterloo, Ontario N2L 3C5 Canada

[Ifeffit] iXAFS 2 beta 1 released

2007-12-06 Thread Jeff Terry
Hi All, iXAFS version 2 for Mac OS X 10.4 and above has been released as a beta version. We have tested this version on ppc and intel macs running OS X 10.4 and 10.5. You must have Apple's version of X11 installed in order to use iXAFS. Ken McIvor put in yeoman's work to build the full