aargh! Yes -- ignore me Listen to Rolf I've just been working so
much with alternative locations recently!
On Fri, Nov 5, 2010 at 6:21 AM, Rolf Huehne wrote:
> On 11/04/2010 06:52 PM, Robert Hanson wrote:
> > On Thu, Nov 4, 2010 at 12:24 PM, Dr. Christoph Gille <
> > christoph.gi...@char
On 11/04/2010 06:52 PM, Robert Hanson wrote:
> On Thu, Nov 4, 2010 at 12:24 PM, Dr. Christoph Gille <
> christoph.gi...@charite.de> wrote:
>> Two questions:
>> 1. How to specify pdb insertion codes in selections
>>
>
> %x
>
> so, for example,
>
> select %A // just the "A" set
> select
On Thu, Nov 4, 2010 at 12:24 PM, Dr. Christoph Gille <
christoph.gi...@charite.de> wrote:
> >select 1.1
> >save coordinates 1
>
> Thanks Bob,
> superposition works fine now.
>
>
> Two questions:
> 1. How to specify pdb insertion codes in selections
>
%x
so, for example,
select %A //
>select 1.1
>save coordinates 1
Thanks Bob,
superposition works fine now.
Two questions:
1. How to specify pdb insertion codes in selections
2. Can I obtain the JMenuBar?
Three bugs:
1. Why zoom with wheel and not ctrl-wheel? Bug or by intention?
2. Tilde (i.e. $HOME) not working in file path
save/restore coordinates saves coordinates in an array of point3f -- not
much different from float[], I think.
also, that operates on the currently selected set, so you can just use
select 1.1
save coordinates 1
select 1.1
restore coordinates 1
But since you will probably be looking at appl
Hi Bob
I looked at some examples of the save-command.
It seems that the state of all loaded molecules was saved.
Is it possible to save just the one model under consideration?
If you say that this is potentially memory consuming,
I might rather save the coordinates in a flat float[] array.
Each
Hi Bob,
> save coordinates
> restore coordinates
this might be a straight forward method.
I have to test this immediatly and will come back soon!
Thanks!
--
The Next 800 Companies to Lead America's Growth: N
Hi Angel,
> Christoph, how do you define "current coordinates"?
I mean the coordinates after performing a rotation / translation in contrast to
the original coordinates
in the protein file.
I always want to start the rotation/ translation from the original PDB
coordinates.
This is probably not
Christoph,
So rotateSelected is what you want. (Also just two words: ROTATE SELECTED.)
As Angel mentions, I don't think you will run into any trouble here unless
you want to apply multiple rotation/translations. In that case, you could
save the rotation/translation as a Jmol variable in the form o
Christoph, how do you define "current coordinates"?
As far as I understand, the (xyz) coordinates of the atoms do not
change when you rotate or translate. So current=original at all
times.
rotateSelected does change the atom positions relative to the rest of
the model, so it does change the xyz
rotateSelected 3x3 and translateSelected vector
may be suitable.
However, these 3D-operations seem to act on the current coordinates of the
model.
Butr my matrix/translation vector needs to be applied to the original
coordinates
as recorded in the PDB file instead to the
current coordinates.
I
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