Re: Figure numbers change tracking

[EK]

  
  
OK-- further research uncovered the culprit for the first issue (the
need to accept any change made before I could compile). 
In my preamble I had the following:



\usepackage{enumitem}


\setlist{leftmargin=0mm,
itemindent=3mm, itemsep=0.75mm,nolistsep}


\usepackage[pdftex,outerbars]{changebar}


\renewcommand{\lyxadded}[3]{{\cbstart\color{lyxadded}{}#3\cbend}}


\renewcommand{\lyxdeleted}[3]{{\cbstart\color{lyxdeleted}\sout{#3}\cbend}}

  

Commenting these lines out solved the problem. I have not yet
discovered the reason for the failure to correctly reference a wrap
figure in a box.

Ehud Kaplan

On 02/07/2013 01:03 AM, Scott Kostyshak
  wrote:


  On Tue, Feb 5, 2013 at 8:46 AM, EK ehud.kap...@gmail.com wrote:

  
Here is a SmallWorkingExample, which illustrates both issues.
Here the reference to the figure appears as Figure  (no number).

Ehud Kaplan

  
  
Hi Ehud,

Thank you for your example file. However, it is not a working example
file for the following reasons:
1. It does not compile.
2. You did not include your bibtex file. If it's not necessary to
reproduce the problem, then consider not making it a dependency by
including references in your MWE .lyx file.
3. Even if you did include your bibtex file, the path to it is
specific to your computer.
4. You did not include the file p-trode-w-dimensions. Further, because
this file has no name, I have no idea what time of graphic it is. And
thus I have no idea what converter is being called.
5. The path to the picture is not relative.

An MWE (or a SWE) should be compilable out of the box.

You probably didn't send the picture because you didn't want to
increase the size of everyone's inboxes and I appreciate that. But
it's very nice to have an MWE. I wish we had a way where you could
upload your files somewhere and then link to them because not everyone
has access to such a service themselves. Also, you could have used a
1kb picture, or no picture at all, to show the problem.

Regarding your potential bug number 1, I think I see what you are
talking about. Here is the PDF that is produced for me on the
development version of LyX:
https://www.dropbox.com/s/e5rpv153nue0lg0/MWE.pdf
There is no number at all in the reference to the figure. It should be
figure 1 and yet nothing shows up.

Regarding point 2, I didn't try to reproduce this as I have no idea
what converter is being called and I'm not sure if by "any change to
the figure" you mean a change to the file itself, a change to the
properties of the figure, a change to the caption, or maybe all of the
above. Please specify just one action in the steps you give to
reproduce the behavior you found. You can then note that any of
several actions could also be used for that step.

I hope I'm not coming across as upset. I'm not at all. I think that it
takes time to learn how to write a good MWE. I also think that we are
missing documentation on how to make an MWE specifically in the
context of LyX. A search for "MWE" at wiki.lyx.org gives nothing. This
is something I would like to work on documenting. Let me know if you
have any suggestions for me.

My guess is that these are LyX bugs. If you are able and willing to
make MWE(s) (either one that shows both problems, or two separate
ones), it would be great if you could open separate bug reports on
www.lyx.org/trac. Please attach any relevant files to each bug report.

Best,

Scott



-- 
  
  Ehud Kaplan, Ph.D.
  Jules and Doris Stein Research to Prevent Blindness
  Professor
  Director, The laboratory of Visual  Computational
  Neuroscience
  Director, Center for Excellence in Computational 
  Systems Neuroscience
  Friedman Brain Institute
  Departments of Neuroscience, Ophthalmology, Structural 
  Chemical Biology,
  The Ichan school of medicine at Mount Sinai
  One Gustave Levy Place, 
  NY, NY, 10029 

  

Lilypond-Book and Xetex error

[Kale Good]

Hello,
To work around known issues with Lilypond-book, I tried installing the most
recent Lilypond (2.16.2). It solved one problem but created another. When
processing in Xetex, there is a line-break following each measure. There is
no problem when the file is processed with pdflatex.

I'm getting these errors in the messages when processing:

11:43:38.493: lilypond-book: warning: Unable to auto-detect default
settings:
11:43:38.495: xetex: /home/kale/lilypond/usr/lib/libpng12.so.0: no version
information available (required by xetex)
11:43:38.496: xetex: /home/kale/lilypond/usr/lib/libstdc++.so.6: no version
information available (required by xetex)
11:43:38.496: xetex: /home/kale/lilypond/usr/lib/libstdc++.so.6: no version
information available (required by xetex)
11:43:38.496: xetex: /home/kale/lilypond/usr/lib/libstdc++.so.6: no version
information available (required by xetex)
11:43:38.496: xetex: /home/kale/lilypond/usr/lib/libstdc++.so.6: no version
information available (required by xetex)
11:43:38.498: xetex: /home/kale/lilypond/usr/lib/libpng12.so.0: no version
information available (required by
/usr/lib/x86_64-linux-gnu/libpoppler.so.19)
11:43:38.502: xetex: /home/kale/lilypond/usr/lib/libstdc++.so.6: no version
information available (required by
/usr/lib/x86_64-linux-gnu/libpoppler.so.19)
11:43:38.502: xetex: /home/kale/lilypond/usr/lib/libstdc++.so.6: no version
information available (required by
/usr/lib/x86_64-linux-gnu/libpoppler.so.19)
11:43:38.503: xdvipdfmx: /home/kale/lilypond/usr/lib/libpng12.so.0: no
version information available (required by xdvipdfmx)

It seemed that lyx wouldn't pick up the install if lilypond wasn't in
/usr/bin, and I couldn't figure out how to get lilypond to install into
/usr/bin/ (that is, without creating a subdirectory /lilypond), so I copied
the lilypond-book into /usr/bin.

 Here is a minimum (I think) .lyx file:

#LyX 2.0 created this file. For more info see http://www.lyx.org/
\lyxformat 413
\begin_document
\begin_header
\textclass paper
\begin_preamble

\end_preamble
\use_default_options true
\begin_modules
lilypond
\end_modules
\maintain_unincluded_children false
\language english
\language_package default
\inputencoding utf8x
\fontencoding global
\font_roman default
\font_sans default
\font_typewriter default
\font_default_family default
\use_non_tex_fonts false
\font_sc false
\font_osf false
\font_sf_scale 100
\font_tt_scale 100

\graphics default
\default_output_format pdf4
\output_sync 0
\bibtex_command default
\index_command default
\paperfontsize 12
\spacing single
\use_hyperref false
\papersize letterpaper
\use_geometry false
\use_amsmath 1
\use_esint 1
\use_mhchem 1
\use_mathdots 1
\cite_engine basic
\use_bibtopic false
\use_indices false
\paperorientation portrait
\suppress_date true
\use_refstyle 1
\index Index
\shortcut idx
\color #008000
\end_index
\secnumdepth 3
\tocdepth 3
\paragraph_separation indent
\paragraph_indentation default
\quotes_language english
\papercolumns 1
\papersides 1
\paperpagestyle default
\tracking_changes false
\output_changes false
\html_math_output 0
\html_css_as_file 0
\html_be_strict false
\end_header

\begin_body

\begin_layout Standard
\begin_inset Flex LilyPond
status open

\begin_layout Plain Layout

\end_layout

\begin_layout Plain Layout

{ c c c c c }
\end_layout

\begin_layout Plain Layout


\end_layout

\end_inset


\end_layout

\end_body
\end_document

Thanks,
Kale


-- 
*Kale Good: Guitar Instructor*
website: phillyguitarlessons.com
email: k...@kalegood.com
phone: (215)260-5383
address: 1867 Frankford Ave.
  Philadelphia, PA 19125
Read my article *The Seven Secrets to Six String Success* at
GuitarNoise.com:
http://www.guitarnoise.com/lesson/seven-secrets-to-six-string-success/
*Leading the Journey from No-Skills-Guitarist to Talented Musician*!

Re: Figure numbers change tracking

[Scott Kostyshak]

On Fri, Feb 8, 2013 at 11:48 AM, EK ehud.kap...@gmail.com wrote:
 OK-- further research uncovered the culprit for the first issue (the need to
 accept any change made before I could compile).
 In my preamble I had the following:

 \usepackage{enumitem}

 \setlist{leftmargin=0mm, itemindent=3mm, itemsep=0.75mm,nolistsep}

 \usepackage[pdftex,outerbars]{changebar}

 \renewcommand{\lyxadded}[3]{{\cbstart\color{lyxadded}{}#3\cbend}}

 \renewcommand{\lyxdeleted}[3]{{\cbstart\color{lyxdeleted}\sout{#3}\cbend}}


 Commenting these lines out solved the problem.  I have not yet discovered
 the reason for the failure to correctly reference a wrap figure in a box.

Thanks for keeping us updated. Hopefully we can figure out the second issue

Best,

Scott

Re: using RevTex 4.1 for journal formatting

[stefano franchi]

On Fri, Feb 8, 2013 at 2:50 PM, Chris Goldenstein csgol...@stanford.eduwrote:

 *\documentclass[osajnl,preprint,showpacs]{revtex4} %%REVTeX 4.0*

 *or*

 *\documentclass[12pt]{article} %%LaTeX 2e*

 *\usepackage{osajnl}*

 The problem is I have no idea where to put these lines of code. Can
 someone please help?



You have two choices:

1. go to DocumentsettingsDocument Class and choose article(revtex4)
from the drop down menu. Then, just below, where it says Class Options
and in the empty field next to Custom, type the
options:osajnl,preprint,showpacs*

*2.*  *go to DocumentsettingsDocument Class and choose article (*not*
article(revtex4). Then, just below, where it says Class Options and in
the empty field next to Custom, type 12pt(without the quotes).
Finally,  select LaTeX preamble from the list on your left and
type \usepackage{osajnl} in the big blank field at the right.


The two alternatives correspond to the two options you were given. You can
check out if everything worked as planned by selecting ViewView Source
and selecting Preamble only on the drop down menu on your right. You
should see exactly what the instructions say.

Cheers,

Stefano

-- 
Christopher S. Goldenstein
Graduate Research Assistant
Stanford University
High Temperature Gasdynamics Laboratory




Long live the tree!!!

-- 
__
Stefano Franchi
Associate Research Professor
Department of Hispanic StudiesPh:   +1 (979) 845-2125
Texas AM University  Fax:  +1 (979) 845-6421
College Station, Texas, USA

stef...@tamu.edu
http://stefano.cleinias.org

Re: using RevTex 4.1 for journal formatting

[Chris Goldenstein]

Thanks so much Stefano. That worked!

-chris


On Fri, Feb 8, 2013 at 1:19 PM, stefano franchi
stefano.fran...@gmail.comwrote:




 On Fri, Feb 8, 2013 at 2:50 PM, Chris Goldenstein 
 csgol...@stanford.eduwrote:

 *\documentclass[osajnl,preprint,showpacs]{revtex4} %%REVTeX 4.0*

 *or*

 *\documentclass[12pt]{article} %%LaTeX 2e*

 *\usepackage{osajnl}*

 The problem is I have no idea where to put these lines of code. Can
 someone please help?



 You have two choices:

 1. go to DocumentsettingsDocument Class and choose article(revtex4)
 from the drop down menu. Then, just below, where it says Class Options
 and in the empty field next to Custom, type the
 options:osajnl,preprint,showpacs*

 *2.*  *go to DocumentsettingsDocument Class and choose article (*not*
 article(revtex4). Then, just below, where it says Class Options and in
 the empty field next to Custom, type 12pt(without the quotes).
 Finally,  select LaTeX preamble from the list on your left and
 type \usepackage{osajnl} in the big blank field at the right.


 The two alternatives correspond to the two options you were given. You can
 check out if everything worked as planned by selecting ViewView Source
 and selecting Preamble only on the drop down menu on your right. You
 should see exactly what the instructions say.

 Cheers,

 Stefano

 --
 Christopher S. Goldenstein
 Graduate Research Assistant
 Stanford University
 High Temperature Gasdynamics Laboratory




 Long live the tree!!!

 --
 __
 Stefano Franchi
 Associate Research Professor
 Department of Hispanic StudiesPh:   +1 (979) 845-2125
 Texas AM University  Fax:  +1 (979) 845-6421
 College Station, Texas, USA

 stef...@tamu.edu
 http://stefano.cleinias.org




-- 
Christopher S. Goldenstein
Graduate Research Assistant
Stanford University
High Temperature Gasdynamics Laboratory

Bldg. 570, Room 570B

Re: Lilypond-Book and Xetex error

[Julien Rioux]

On 08/02/2013 12:17 PM, Kale Good wrote:

Hello,
To work around known issues with Lilypond-book, I tried installing the most
recent Lilypond (2.16.2). It solved one problem but created another. When
processing in Xetex, there is a line-break following each measure. There is
no problem when the file is processed with pdflatex.

I'm getting these errors in the messages when processing:

11:43:38.493: lilypond-book: warning: Unable to auto-detect default
settings:
11:43:38.495: xetex: /home/kale/lilypond/usr/lib/libpng12.so.0: no version
information available (required by xetex)
11:43:38.496: xetex: /home/kale/lilypond/usr/lib/libstdc++.so.6: no version
information available (required by xetex)
11:43:38.496: xetex: /home/kale/lilypond/usr/lib/libstdc++.so.6: no version
information available (required by xetex)
11:43:38.496: xetex: /home/kale/lilypond/usr/lib/libstdc++.so.6: no version
information available (required by xetex)
11:43:38.496: xetex: /home/kale/lilypond/usr/lib/libstdc++.so.6: no version
information available (required by xetex)
11:43:38.498: xetex: /home/kale/lilypond/usr/lib/libpng12.so.0: no version
information available (required by
/usr/lib/x86_64-linux-gnu/libpoppler.so.19)
11:43:38.502: xetex: /home/kale/lilypond/usr/lib/libstdc++.so.6: no version
information available (required by
/usr/lib/x86_64-linux-gnu/libpoppler.so.19)
11:43:38.502: xetex: /home/kale/lilypond/usr/lib/libstdc++.so.6: no version
information available (required by
/usr/lib/x86_64-linux-gnu/libpoppler.so.19)
11:43:38.503: xdvipdfmx: /home/kale/lilypond/usr/lib/libpng12.so.0: no
version information available (required by xdvipdfmx)

It seemed that lyx wouldn't pick up the install if lilypond wasn't in
/usr/bin, and I couldn't figure out how to get lilypond to install into
/usr/bin/ (that is, without creating a subdirectory /lilypond), so I copied
the lilypond-book into /usr/bin.

  Here is a minimum (I think) .lyx file:

[...]

Thanks,
Kale




Your file compiles fine here using xelatex and the pdf has only one 
staff line, i.e. no line break. Did you modify or perhaps define the 
converter yourself? I have this for converter from LilyPond book 
(LaTeX) to PDF (XeTeX):


python C:\Program Files (x86)\LilyPond\usr\bin\lilypond-book.py 
--verbose --pdf --latex-program=xelatex --lily-output-dir=ly-pdf -I $$r $$i


I'm using a slightly older version of lilypond, 2.15.40, on Win7, so 
it's possible that something has changed between versions or that the 
behavior is different between OSes.


Cheers,
Julien

Re: Lilypond-Book and Xetex error

[Kale Good]

That was it, thanks. I had edited it (in a completely uninformed way)
trying to solve the fretboard diagram issue, but failed. I updated from
2.14 to 2.16, and no longer have the fretboard diagram issue.


On Fri, Feb 8, 2013 at 6:57 PM, Julien Rioux jri...@lyx.org wrote:

 On 08/02/2013 12:17 PM, Kale Good wrote:

 Hello,
 To work around known issues with Lilypond-book, I tried installing the
 most
 recent Lilypond (2.16.2). It solved one problem but created another. When
 processing in Xetex, there is a line-break following each measure. There
 is
 no problem when the file is processed with pdflatex.

 I'm getting these errors in the messages when processing:

 11:43:38.493: lilypond-book: warning: Unable to auto-detect default
 settings:
 11:43:38.495: xetex: /home/kale/lilypond/usr/lib/**libpng12.so.0: no
 version
 information available (required by xetex)
 11:43:38.496: xetex: /home/kale/lilypond/usr/lib/**libstdc++.so.6: no
 version
 information available (required by xetex)
 11:43:38.496: xetex: /home/kale/lilypond/usr/lib/**libstdc++.so.6: no
 version
 information available (required by xetex)
 11:43:38.496: xetex: /home/kale/lilypond/usr/lib/**libstdc++.so.6: no
 version
 information available (required by xetex)
 11:43:38.496: xetex: /home/kale/lilypond/usr/lib/**libstdc++.so.6: no
 version
 information available (required by xetex)
 11:43:38.498: xetex: /home/kale/lilypond/usr/lib/**libpng12.so.0: no
 version
 information available (required by
 /usr/lib/x86_64-linux-gnu/**libpoppler.so.19)
 11:43:38.502: xetex: /home/kale/lilypond/usr/lib/**libstdc++.so.6: no
 version
 information available (required by
 /usr/lib/x86_64-linux-gnu/**libpoppler.so.19)
 11:43:38.502: xetex: /home/kale/lilypond/usr/lib/**libstdc++.so.6: no
 version
 information available (required by
 /usr/lib/x86_64-linux-gnu/**libpoppler.so.19)
 11:43:38.503: xdvipdfmx: /home/kale/lilypond/usr/lib/**libpng12.so.0: no
 version information available (required by xdvipdfmx)

 It seemed that lyx wouldn't pick up the install if lilypond wasn't in
 /usr/bin, and I couldn't figure out how to get lilypond to install into
 /usr/bin/ (that is, without creating a subdirectory /lilypond), so I
 copied
 the lilypond-book into /usr/bin.

   Here is a minimum (I think) .lyx file:

 [...]

 Thanks,
 Kale



 Your file compiles fine here using xelatex and the pdf has only one staff
 line, i.e. no line break. Did you modify or perhaps define the converter
 yourself? I have this for converter from LilyPond book (LaTeX) to PDF
 (XeTeX):

 python C:\Program Files (x86)\LilyPond\usr\bin\**lilypond-book.py
 --verbose --pdf --latex-program=xelatex --lily-output-dir=ly-pdf -I $$r $$i

 I'm using a slightly older version of lilypond, 2.15.40, on Win7, so it's
 possible that something has changed between versions or that the behavior
 is different between OSes.

 Cheers,
 Julien




-- 
*Kale Good: Guitar Instructor*
website: phillyguitarlessons.com
email: k...@kalegood.com
phone: (215)260-5383
address: 1867 Frankford Ave.
  Philadelphia, PA 19125
Read my article *The Seven Secrets to Six String Success* at
GuitarNoise.com:
http://www.guitarnoise.com/lesson/seven-secrets-to-six-string-success/
*Leading the Journey from No-Skills-Guitarist to Talented Musician*!

Re: Lilypond-Book and Xetex error

[Kale Good]

I spoke a moment too soon, and possibly misdiagnosed from the get-go. With
default fonts, it works. As soon as I try non-default fonts, it reverts to
the incorrect output. Here's my converter command:

lilypond-book --verbose --pdf --latex-program=xelatex
--lily-output-dir=ly-pdf -I $$r $$i

Oddly, it also takes much longer to compile the document.


On Fri, Feb 8, 2013 at 8:14 PM, Kale Good k...@kalegood.com wrote:

 That was it, thanks. I had edited it (in a completely uninformed way)
 trying to solve the fretboard diagram issue, but failed. I updated from
 2.14 to 2.16, and no longer have the fretboard diagram issue.


 On Fri, Feb 8, 2013 at 6:57 PM, Julien Rioux jri...@lyx.org wrote:

 On 08/02/2013 12:17 PM, Kale Good wrote:

 Hello,
 To work around known issues with Lilypond-book, I tried installing the
 most
 recent Lilypond (2.16.2). It solved one problem but created another. When
 processing in Xetex, there is a line-break following each measure. There
 is
 no problem when the file is processed with pdflatex.

 I'm getting these errors in the messages when processing:

 11:43:38.493: lilypond-book: warning: Unable to auto-detect default
 settings:
 11:43:38.495: xetex: /home/kale/lilypond/usr/lib/**libpng12.so.0: no
 version
 information available (required by xetex)
 11:43:38.496: xetex: /home/kale/lilypond/usr/lib/**libstdc++.so.6: no
 version
 information available (required by xetex)
 11:43:38.496: xetex: /home/kale/lilypond/usr/lib/**libstdc++.so.6: no
 version
 information available (required by xetex)
 11:43:38.496: xetex: /home/kale/lilypond/usr/lib/**libstdc++.so.6: no
 version
 information available (required by xetex)
 11:43:38.496: xetex: /home/kale/lilypond/usr/lib/**libstdc++.so.6: no
 version
 information available (required by xetex)
 11:43:38.498: xetex: /home/kale/lilypond/usr/lib/**libpng12.so.0: no
 version
 information available (required by
 /usr/lib/x86_64-linux-gnu/**libpoppler.so.19)
 11:43:38.502: xetex: /home/kale/lilypond/usr/lib/**libstdc++.so.6: no
 version
 information available (required by
 /usr/lib/x86_64-linux-gnu/**libpoppler.so.19)
 11:43:38.502: xetex: /home/kale/lilypond/usr/lib/**libstdc++.so.6: no
 version
 information available (required by
 /usr/lib/x86_64-linux-gnu/**libpoppler.so.19)
 11:43:38.503: xdvipdfmx: /home/kale/lilypond/usr/lib/**libpng12.so.0: no
 version information available (required by xdvipdfmx)

 It seemed that lyx wouldn't pick up the install if lilypond wasn't in
 /usr/bin, and I couldn't figure out how to get lilypond to install into
 /usr/bin/ (that is, without creating a subdirectory /lilypond), so I
 copied
 the lilypond-book into /usr/bin.

   Here is a minimum (I think) .lyx file:

 [...]

 Thanks,
 Kale



 Your file compiles fine here using xelatex and the pdf has only one staff
 line, i.e. no line break. Did you modify or perhaps define the converter
 yourself? I have this for converter from LilyPond book (LaTeX) to PDF
 (XeTeX):

 python C:\Program Files (x86)\LilyPond\usr\bin\**lilypond-book.py
 --verbose --pdf --latex-program=xelatex --lily-output-dir=ly-pdf -I $$r $$i

 I'm using a slightly older version of lilypond, 2.15.40, on Win7, so it's
 possible that something has changed between versions or that the behavior
 is different between OSes.

 Cheers,
 Julien




 --
 *Kale Good: Guitar Instructor*
 website: phillyguitarlessons.com
 email: k...@kalegood.com
 phone: (215)260-5383
 address: 1867 Frankford Ave.
   Philadelphia, PA 19125
 Read my article *The Seven Secrets to Six String Success* at
 GuitarNoise.com:
 http://www.guitarnoise.com/lesson/seven-secrets-to-six-string-success/
 *Leading the Journey from No-Skills-Guitarist to Talented Musician*!




-- 
*Kale Good: Guitar Instructor*
website: phillyguitarlessons.com
email: k...@kalegood.com
phone: (215)260-5383
address: 1867 Frankford Ave.
  Philadelphia, PA 19125
Read my article *The Seven Secrets to Six String Success* at
GuitarNoise.com:
http://www.guitarnoise.com/lesson/seven-secrets-to-six-string-success/
*Leading the Journey from No-Skills-Guitarist to Talented Musician*!

Re: Problems with Windows installation [solved]

[Denis J Navas]

In a different group, was informed that CTAN deprecated amsmath and  
replaced with two packages.  Probably this is the cause to the lack of  
compilation.  MikTeX was actualizing a change that was not anounced to the  
user.

Re: Lilypond-Book and Xetex error

[Julien Rioux]

On 08/02/2013 8:36 PM, Kale Good wrote:

I spoke a moment too soon, and possibly misdiagnosed from the get-go. With
default fonts, it works. As soon as I try non-default fonts, it reverts to
the incorrect output. Here's my converter command:

lilypond-book --verbose --pdf --latex-program=xelatex
--lily-output-dir=ly-pdf -I $$r $$i

Oddly, it also takes much longer to compile the document.





Hi,
Again, works here. Can you please attach the file that fails for you? 
Does the issue resolve itself if you save the file, close it and reopen 
it? I am thinking that maybe something, that prevents compilation, is 
left out in the temporary build directory when you switch font.


Thanks,
Cheers,
Julien


xetex.lyx
Description: application/lyx


xetex.pdf
Description: Adobe PDF document

Re: Figure numbers change tracking

[EK]

  
  
OK-- further research uncovered the culprit for the first issue (the
need to accept any change made before I could compile). 
In my preamble I had the following:



\usepackage{enumitem}


\setlist{leftmargin=0mm,
itemindent=3mm, itemsep=0.75mm,nolistsep}


\usepackage[pdftex,outerbars]{changebar}


\renewcommand{\lyxadded}[3]{{\cbstart\color{lyxadded}{}#3\cbend}}


\renewcommand{\lyxdeleted}[3]{{\cbstart\color{lyxdeleted}\sout{#3}\cbend}}

  

Commenting these lines out solved the problem. I have not yet
discovered the reason for the failure to correctly reference a wrap
figure in a box.

Ehud Kaplan

On 02/07/2013 01:03 AM, Scott Kostyshak
  wrote:


  On Tue, Feb 5, 2013 at 8:46 AM, EK ehud.kap...@gmail.com wrote:

  
Here is a SmallWorkingExample, which illustrates both issues.
Here the reference to the figure appears as Figure  (no number).

Ehud Kaplan

  
  
Hi Ehud,

Thank you for your example file. However, it is not a working example
file for the following reasons:
1. It does not compile.
2. You did not include your bibtex file. If it's not necessary to
reproduce the problem, then consider not making it a dependency by
including references in your MWE .lyx file.
3. Even if you did include your bibtex file, the path to it is
specific to your computer.
4. You did not include the file p-trode-w-dimensions. Further, because
this file has no name, I have no idea what time of graphic it is. And
thus I have no idea what converter is being called.
5. The path to the picture is not relative.

An MWE (or a SWE) should be compilable out of the box.

You probably didn't send the picture because you didn't want to
increase the size of everyone's inboxes and I appreciate that. But
it's very nice to have an MWE. I wish we had a way where you could
upload your files somewhere and then link to them because not everyone
has access to such a service themselves. Also, you could have used a
1kb picture, or no picture at all, to show the problem.

Regarding your potential bug number 1, I think I see what you are
talking about. Here is the PDF that is produced for me on the
development version of LyX:
https://www.dropbox.com/s/e5rpv153nue0lg0/MWE.pdf
There is no number at all in the reference to the figure. It should be
figure 1 and yet nothing shows up.

Regarding point 2, I didn't try to reproduce this as I have no idea
what converter is being called and I'm not sure if by "any change to
the figure" you mean a change to the file itself, a change to the
properties of the figure, a change to the caption, or maybe all of the
above. Please specify just one action in the steps you give to
reproduce the behavior you found. You can then note that any of
several actions could also be used for that step.

I hope I'm not coming across as upset. I'm not at all. I think that it
takes time to learn how to write a good MWE. I also think that we are
missing documentation on how to make an MWE specifically in the
context of LyX. A search for "MWE" at wiki.lyx.org gives nothing. This
is something I would like to work on documenting. Let me know if you
have any suggestions for me.

My guess is that these are LyX bugs. If you are able and willing to
make MWE(s) (either one that shows both problems, or two separate
ones), it would be great if you could open separate bug reports on
www.lyx.org/trac. Please attach any relevant files to each bug report.

Best,

Scott



-- 
  
  Ehud Kaplan, Ph.D.
  Jules and Doris Stein Research to Prevent Blindness
  Professor
  Director, The laboratory of Visual  Computational
  Neuroscience
  Director, Center for Excellence in Computational 
  Systems Neuroscience
  Friedman Brain Institute
  Departments of Neuroscience, Ophthalmology, Structural 
  Chemical Biology,
  The Ichan school of medicine at Mount Sinai
  One Gustave Levy Place, 
  NY, NY, 10029 

  

Lilypond-Book and Xetex error

[Kale Good]

Hello,
To work around known issues with Lilypond-book, I tried installing the most
recent Lilypond (2.16.2). It solved one problem but created another. When
processing in Xetex, there is a line-break following each measure. There is
no problem when the file is processed with pdflatex.

I'm getting these errors in the messages when processing:

11:43:38.493: lilypond-book: warning: Unable to auto-detect default
settings:
11:43:38.495: xetex: /home/kale/lilypond/usr/lib/libpng12.so.0: no version
information available (required by xetex)
11:43:38.496: xetex: /home/kale/lilypond/usr/lib/libstdc++.so.6: no version
information available (required by xetex)
11:43:38.496: xetex: /home/kale/lilypond/usr/lib/libstdc++.so.6: no version
information available (required by xetex)
11:43:38.496: xetex: /home/kale/lilypond/usr/lib/libstdc++.so.6: no version
information available (required by xetex)
11:43:38.496: xetex: /home/kale/lilypond/usr/lib/libstdc++.so.6: no version
information available (required by xetex)
11:43:38.498: xetex: /home/kale/lilypond/usr/lib/libpng12.so.0: no version
information available (required by
/usr/lib/x86_64-linux-gnu/libpoppler.so.19)
11:43:38.502: xetex: /home/kale/lilypond/usr/lib/libstdc++.so.6: no version
information available (required by
/usr/lib/x86_64-linux-gnu/libpoppler.so.19)
11:43:38.502: xetex: /home/kale/lilypond/usr/lib/libstdc++.so.6: no version
information available (required by
/usr/lib/x86_64-linux-gnu/libpoppler.so.19)
11:43:38.503: xdvipdfmx: /home/kale/lilypond/usr/lib/libpng12.so.0: no
version information available (required by xdvipdfmx)

It seemed that lyx wouldn't pick up the install if lilypond wasn't in
/usr/bin, and I couldn't figure out how to get lilypond to install into
/usr/bin/ (that is, without creating a subdirectory /lilypond), so I copied
the lilypond-book into /usr/bin.

 Here is a minimum (I think) .lyx file:

#LyX 2.0 created this file. For more info see http://www.lyx.org/
\lyxformat 413
\begin_document
\begin_header
\textclass paper
\begin_preamble

\end_preamble
\use_default_options true
\begin_modules
lilypond
\end_modules
\maintain_unincluded_children false
\language english
\language_package default
\inputencoding utf8x
\fontencoding global
\font_roman default
\font_sans default
\font_typewriter default
\font_default_family default
\use_non_tex_fonts false
\font_sc false
\font_osf false
\font_sf_scale 100
\font_tt_scale 100

\graphics default
\default_output_format pdf4
\output_sync 0
\bibtex_command default
\index_command default
\paperfontsize 12
\spacing single
\use_hyperref false
\papersize letterpaper
\use_geometry false
\use_amsmath 1
\use_esint 1
\use_mhchem 1
\use_mathdots 1
\cite_engine basic
\use_bibtopic false
\use_indices false
\paperorientation portrait
\suppress_date true
\use_refstyle 1
\index Index
\shortcut idx
\color #008000
\end_index
\secnumdepth 3
\tocdepth 3
\paragraph_separation indent
\paragraph_indentation default
\quotes_language english
\papercolumns 1
\papersides 1
\paperpagestyle default
\tracking_changes false
\output_changes false
\html_math_output 0
\html_css_as_file 0
\html_be_strict false
\end_header

\begin_body

\begin_layout Standard
\begin_inset Flex LilyPond
status open

\begin_layout Plain Layout

\end_layout

\begin_layout Plain Layout

{ c c c c c }
\end_layout

\begin_layout Plain Layout


\end_layout

\end_inset


\end_layout

\end_body
\end_document

Thanks,
Kale


-- 
*Kale Good: Guitar Instructor*
website: phillyguitarlessons.com
email: k...@kalegood.com
phone: (215)260-5383
address: 1867 Frankford Ave.
  Philadelphia, PA 19125
Read my article *The Seven Secrets to Six String Success* at
GuitarNoise.com:
http://www.guitarnoise.com/lesson/seven-secrets-to-six-string-success/
*Leading the Journey from No-Skills-Guitarist to Talented Musician*!

Re: Figure numbers change tracking

[Scott Kostyshak]

On Fri, Feb 8, 2013 at 11:48 AM, EK ehud.kap...@gmail.com wrote:
 OK-- further research uncovered the culprit for the first issue (the need to
 accept any change made before I could compile).
 In my preamble I had the following:

 \usepackage{enumitem}

 \setlist{leftmargin=0mm, itemindent=3mm, itemsep=0.75mm,nolistsep}

 \usepackage[pdftex,outerbars]{changebar}

 \renewcommand{\lyxadded}[3]{{\cbstart\color{lyxadded}{}#3\cbend}}

 \renewcommand{\lyxdeleted}[3]{{\cbstart\color{lyxdeleted}\sout{#3}\cbend}}


 Commenting these lines out solved the problem.  I have not yet discovered
 the reason for the failure to correctly reference a wrap figure in a box.

Thanks for keeping us updated. Hopefully we can figure out the second issue

Best,

Scott

Re: using RevTex 4.1 for journal formatting

[stefano franchi]

On Fri, Feb 8, 2013 at 2:50 PM, Chris Goldenstein csgol...@stanford.eduwrote:

 *\documentclass[osajnl,preprint,showpacs]{revtex4} %%REVTeX 4.0*

 *or*

 *\documentclass[12pt]{article} %%LaTeX 2e*

 *\usepackage{osajnl}*

 The problem is I have no idea where to put these lines of code. Can
 someone please help?



You have two choices:

1. go to DocumentsettingsDocument Class and choose article(revtex4)
from the drop down menu. Then, just below, where it says Class Options
and in the empty field next to Custom, type the
options:osajnl,preprint,showpacs*

*2.*  *go to DocumentsettingsDocument Class and choose article (*not*
article(revtex4). Then, just below, where it says Class Options and in
the empty field next to Custom, type 12pt(without the quotes).
Finally,  select LaTeX preamble from the list on your left and
type \usepackage{osajnl} in the big blank field at the right.


The two alternatives correspond to the two options you were given. You can
check out if everything worked as planned by selecting ViewView Source
and selecting Preamble only on the drop down menu on your right. You
should see exactly what the instructions say.

Cheers,

Stefano

-- 
Christopher S. Goldenstein
Graduate Research Assistant
Stanford University
High Temperature Gasdynamics Laboratory




Long live the tree!!!

-- 
__
Stefano Franchi
Associate Research Professor
Department of Hispanic StudiesPh:   +1 (979) 845-2125
Texas AM University  Fax:  +1 (979) 845-6421
College Station, Texas, USA

stef...@tamu.edu
http://stefano.cleinias.org

Re: using RevTex 4.1 for journal formatting

[Chris Goldenstein]

Thanks so much Stefano. That worked!

-chris


On Fri, Feb 8, 2013 at 1:19 PM, stefano franchi
stefano.fran...@gmail.comwrote:




 On Fri, Feb 8, 2013 at 2:50 PM, Chris Goldenstein 
 csgol...@stanford.eduwrote:

 *\documentclass[osajnl,preprint,showpacs]{revtex4} %%REVTeX 4.0*

 *or*

 *\documentclass[12pt]{article} %%LaTeX 2e*

 *\usepackage{osajnl}*

 The problem is I have no idea where to put these lines of code. Can
 someone please help?



 You have two choices:

 1. go to DocumentsettingsDocument Class and choose article(revtex4)
 from the drop down menu. Then, just below, where it says Class Options
 and in the empty field next to Custom, type the
 options:osajnl,preprint,showpacs*

 *2.*  *go to DocumentsettingsDocument Class and choose article (*not*
 article(revtex4). Then, just below, where it says Class Options and in
 the empty field next to Custom, type 12pt(without the quotes).
 Finally,  select LaTeX preamble from the list on your left and
 type \usepackage{osajnl} in the big blank field at the right.


 The two alternatives correspond to the two options you were given. You can
 check out if everything worked as planned by selecting ViewView Source
 and selecting Preamble only on the drop down menu on your right. You
 should see exactly what the instructions say.

 Cheers,

 Stefano

 --
 Christopher S. Goldenstein
 Graduate Research Assistant
 Stanford University
 High Temperature Gasdynamics Laboratory




 Long live the tree!!!

 --
 __
 Stefano Franchi
 Associate Research Professor
 Department of Hispanic StudiesPh:   +1 (979) 845-2125
 Texas AM University  Fax:  +1 (979) 845-6421
 College Station, Texas, USA

 stef...@tamu.edu
 http://stefano.cleinias.org




-- 
Christopher S. Goldenstein
Graduate Research Assistant
Stanford University
High Temperature Gasdynamics Laboratory

Bldg. 570, Room 570B

Re: Lilypond-Book and Xetex error

[Julien Rioux]

On 08/02/2013 12:17 PM, Kale Good wrote:

Hello,
To work around known issues with Lilypond-book, I tried installing the most
recent Lilypond (2.16.2). It solved one problem but created another. When
processing in Xetex, there is a line-break following each measure. There is
no problem when the file is processed with pdflatex.

I'm getting these errors in the messages when processing:

11:43:38.493: lilypond-book: warning: Unable to auto-detect default
settings:
11:43:38.495: xetex: /home/kale/lilypond/usr/lib/libpng12.so.0: no version
information available (required by xetex)
11:43:38.496: xetex: /home/kale/lilypond/usr/lib/libstdc++.so.6: no version
information available (required by xetex)
11:43:38.496: xetex: /home/kale/lilypond/usr/lib/libstdc++.so.6: no version
information available (required by xetex)
11:43:38.496: xetex: /home/kale/lilypond/usr/lib/libstdc++.so.6: no version
information available (required by xetex)
11:43:38.496: xetex: /home/kale/lilypond/usr/lib/libstdc++.so.6: no version
information available (required by xetex)
11:43:38.498: xetex: /home/kale/lilypond/usr/lib/libpng12.so.0: no version
information available (required by
/usr/lib/x86_64-linux-gnu/libpoppler.so.19)
11:43:38.502: xetex: /home/kale/lilypond/usr/lib/libstdc++.so.6: no version
information available (required by
/usr/lib/x86_64-linux-gnu/libpoppler.so.19)
11:43:38.502: xetex: /home/kale/lilypond/usr/lib/libstdc++.so.6: no version
information available (required by
/usr/lib/x86_64-linux-gnu/libpoppler.so.19)
11:43:38.503: xdvipdfmx: /home/kale/lilypond/usr/lib/libpng12.so.0: no
version information available (required by xdvipdfmx)

It seemed that lyx wouldn't pick up the install if lilypond wasn't in
/usr/bin, and I couldn't figure out how to get lilypond to install into
/usr/bin/ (that is, without creating a subdirectory /lilypond), so I copied
the lilypond-book into /usr/bin.

  Here is a minimum (I think) .lyx file:

[...]

Thanks,
Kale




Your file compiles fine here using xelatex and the pdf has only one 
staff line, i.e. no line break. Did you modify or perhaps define the 
converter yourself? I have this for converter from LilyPond book 
(LaTeX) to PDF (XeTeX):


python C:\Program Files (x86)\LilyPond\usr\bin\lilypond-book.py 
--verbose --pdf --latex-program=xelatex --lily-output-dir=ly-pdf -I $$r $$i


I'm using a slightly older version of lilypond, 2.15.40, on Win7, so 
it's possible that something has changed between versions or that the 
behavior is different between OSes.


Cheers,
Julien

Re: Lilypond-Book and Xetex error

[Kale Good]

That was it, thanks. I had edited it (in a completely uninformed way)
trying to solve the fretboard diagram issue, but failed. I updated from
2.14 to 2.16, and no longer have the fretboard diagram issue.


On Fri, Feb 8, 2013 at 6:57 PM, Julien Rioux jri...@lyx.org wrote:

 On 08/02/2013 12:17 PM, Kale Good wrote:

 Hello,
 To work around known issues with Lilypond-book, I tried installing the
 most
 recent Lilypond (2.16.2). It solved one problem but created another. When
 processing in Xetex, there is a line-break following each measure. There
 is
 no problem when the file is processed with pdflatex.

 I'm getting these errors in the messages when processing:

 11:43:38.493: lilypond-book: warning: Unable to auto-detect default
 settings:
 11:43:38.495: xetex: /home/kale/lilypond/usr/lib/**libpng12.so.0: no
 version
 information available (required by xetex)
 11:43:38.496: xetex: /home/kale/lilypond/usr/lib/**libstdc++.so.6: no
 version
 information available (required by xetex)
 11:43:38.496: xetex: /home/kale/lilypond/usr/lib/**libstdc++.so.6: no
 version
 information available (required by xetex)
 11:43:38.496: xetex: /home/kale/lilypond/usr/lib/**libstdc++.so.6: no
 version
 information available (required by xetex)
 11:43:38.496: xetex: /home/kale/lilypond/usr/lib/**libstdc++.so.6: no
 version
 information available (required by xetex)
 11:43:38.498: xetex: /home/kale/lilypond/usr/lib/**libpng12.so.0: no
 version
 information available (required by
 /usr/lib/x86_64-linux-gnu/**libpoppler.so.19)
 11:43:38.502: xetex: /home/kale/lilypond/usr/lib/**libstdc++.so.6: no
 version
 information available (required by
 /usr/lib/x86_64-linux-gnu/**libpoppler.so.19)
 11:43:38.502: xetex: /home/kale/lilypond/usr/lib/**libstdc++.so.6: no
 version
 information available (required by
 /usr/lib/x86_64-linux-gnu/**libpoppler.so.19)
 11:43:38.503: xdvipdfmx: /home/kale/lilypond/usr/lib/**libpng12.so.0: no
 version information available (required by xdvipdfmx)

 It seemed that lyx wouldn't pick up the install if lilypond wasn't in
 /usr/bin, and I couldn't figure out how to get lilypond to install into
 /usr/bin/ (that is, without creating a subdirectory /lilypond), so I
 copied
 the lilypond-book into /usr/bin.

   Here is a minimum (I think) .lyx file:

 [...]

 Thanks,
 Kale



 Your file compiles fine here using xelatex and the pdf has only one staff
 line, i.e. no line break. Did you modify or perhaps define the converter
 yourself? I have this for converter from LilyPond book (LaTeX) to PDF
 (XeTeX):

 python C:\Program Files (x86)\LilyPond\usr\bin\**lilypond-book.py
 --verbose --pdf --latex-program=xelatex --lily-output-dir=ly-pdf -I $$r $$i

 I'm using a slightly older version of lilypond, 2.15.40, on Win7, so it's
 possible that something has changed between versions or that the behavior
 is different between OSes.

 Cheers,
 Julien




-- 
*Kale Good: Guitar Instructor*
website: phillyguitarlessons.com
email: k...@kalegood.com
phone: (215)260-5383
address: 1867 Frankford Ave.
  Philadelphia, PA 19125
Read my article *The Seven Secrets to Six String Success* at
GuitarNoise.com:
http://www.guitarnoise.com/lesson/seven-secrets-to-six-string-success/
*Leading the Journey from No-Skills-Guitarist to Talented Musician*!

Re: Lilypond-Book and Xetex error

[Kale Good]

I spoke a moment too soon, and possibly misdiagnosed from the get-go. With
default fonts, it works. As soon as I try non-default fonts, it reverts to
the incorrect output. Here's my converter command:

lilypond-book --verbose --pdf --latex-program=xelatex
--lily-output-dir=ly-pdf -I $$r $$i

Oddly, it also takes much longer to compile the document.


On Fri, Feb 8, 2013 at 8:14 PM, Kale Good k...@kalegood.com wrote:

 That was it, thanks. I had edited it (in a completely uninformed way)
 trying to solve the fretboard diagram issue, but failed. I updated from
 2.14 to 2.16, and no longer have the fretboard diagram issue.


 On Fri, Feb 8, 2013 at 6:57 PM, Julien Rioux jri...@lyx.org wrote:

 On 08/02/2013 12:17 PM, Kale Good wrote:

 Hello,
 To work around known issues with Lilypond-book, I tried installing the
 most
 recent Lilypond (2.16.2). It solved one problem but created another. When
 processing in Xetex, there is a line-break following each measure. There
 is
 no problem when the file is processed with pdflatex.

 I'm getting these errors in the messages when processing:

 11:43:38.493: lilypond-book: warning: Unable to auto-detect default
 settings:
 11:43:38.495: xetex: /home/kale/lilypond/usr/lib/**libpng12.so.0: no
 version
 information available (required by xetex)
 11:43:38.496: xetex: /home/kale/lilypond/usr/lib/**libstdc++.so.6: no
 version
 information available (required by xetex)
 11:43:38.496: xetex: /home/kale/lilypond/usr/lib/**libstdc++.so.6: no
 version
 information available (required by xetex)
 11:43:38.496: xetex: /home/kale/lilypond/usr/lib/**libstdc++.so.6: no
 version
 information available (required by xetex)
 11:43:38.496: xetex: /home/kale/lilypond/usr/lib/**libstdc++.so.6: no
 version
 information available (required by xetex)
 11:43:38.498: xetex: /home/kale/lilypond/usr/lib/**libpng12.so.0: no
 version
 information available (required by
 /usr/lib/x86_64-linux-gnu/**libpoppler.so.19)
 11:43:38.502: xetex: /home/kale/lilypond/usr/lib/**libstdc++.so.6: no
 version
 information available (required by
 /usr/lib/x86_64-linux-gnu/**libpoppler.so.19)
 11:43:38.502: xetex: /home/kale/lilypond/usr/lib/**libstdc++.so.6: no
 version
 information available (required by
 /usr/lib/x86_64-linux-gnu/**libpoppler.so.19)
 11:43:38.503: xdvipdfmx: /home/kale/lilypond/usr/lib/**libpng12.so.0: no
 version information available (required by xdvipdfmx)

 It seemed that lyx wouldn't pick up the install if lilypond wasn't in
 /usr/bin, and I couldn't figure out how to get lilypond to install into
 /usr/bin/ (that is, without creating a subdirectory /lilypond), so I
 copied
 the lilypond-book into /usr/bin.

   Here is a minimum (I think) .lyx file:

 [...]

 Thanks,
 Kale



 Your file compiles fine here using xelatex and the pdf has only one staff
 line, i.e. no line break. Did you modify or perhaps define the converter
 yourself? I have this for converter from LilyPond book (LaTeX) to PDF
 (XeTeX):

 python C:\Program Files (x86)\LilyPond\usr\bin\**lilypond-book.py
 --verbose --pdf --latex-program=xelatex --lily-output-dir=ly-pdf -I $$r $$i

 I'm using a slightly older version of lilypond, 2.15.40, on Win7, so it's
 possible that something has changed between versions or that the behavior
 is different between OSes.

 Cheers,
 Julien




 --
 *Kale Good: Guitar Instructor*
 website: phillyguitarlessons.com
 email: k...@kalegood.com
 phone: (215)260-5383
 address: 1867 Frankford Ave.
   Philadelphia, PA 19125
 Read my article *The Seven Secrets to Six String Success* at
 GuitarNoise.com:
 http://www.guitarnoise.com/lesson/seven-secrets-to-six-string-success/
 *Leading the Journey from No-Skills-Guitarist to Talented Musician*!




-- 
*Kale Good: Guitar Instructor*
website: phillyguitarlessons.com
email: k...@kalegood.com
phone: (215)260-5383
address: 1867 Frankford Ave.
  Philadelphia, PA 19125
Read my article *The Seven Secrets to Six String Success* at
GuitarNoise.com:
http://www.guitarnoise.com/lesson/seven-secrets-to-six-string-success/
*Leading the Journey from No-Skills-Guitarist to Talented Musician*!

Re: Problems with Windows installation [solved]

[Denis J Navas]

In a different group, was informed that CTAN deprecated amsmath and  
replaced with two packages.  Probably this is the cause to the lack of  
compilation.  MikTeX was actualizing a change that was not anounced to the  
user.

Re: Lilypond-Book and Xetex error

[Julien Rioux]

On 08/02/2013 8:36 PM, Kale Good wrote:

I spoke a moment too soon, and possibly misdiagnosed from the get-go. With
default fonts, it works. As soon as I try non-default fonts, it reverts to
the incorrect output. Here's my converter command:

lilypond-book --verbose --pdf --latex-program=xelatex
--lily-output-dir=ly-pdf -I $$r $$i

Oddly, it also takes much longer to compile the document.





Hi,
Again, works here. Can you please attach the file that fails for you? 
Does the issue resolve itself if you save the file, close it and reopen 
it? I am thinking that maybe something, that prevents compilation, is 
left out in the temporary build directory when you switch font.


Thanks,
Cheers,
Julien


xetex.lyx
Description: application/lyx


xetex.pdf
Description: Adobe PDF document

Re: Figure numbers & change tracking

[EK]

  
  
OK-- further research uncovered the culprit for the first issue (the
need to accept any change made before I could compile).  
In my preamble I had the following:



\usepackage{enumitem}


\setlist{leftmargin=0mm,
itemindent=3mm, itemsep=0.75mm,nolistsep}


\usepackage[pdftex,outerbars]{changebar}


\renewcommand{\lyxadded}[3]{{\cbstart\color{lyxadded}{}#3\cbend}}


\renewcommand{\lyxdeleted}[3]{{\cbstart\color{lyxdeleted}\sout{#3}\cbend}}

  

Commenting these lines out solved the problem.  I have not yet
discovered the reason for the failure to correctly reference a wrap
figure in a box.

Ehud Kaplan

On 02/07/2013 01:03 AM, Scott Kostyshak
  wrote:


  On Tue, Feb 5, 2013 at 8:46 AM, EK  wrote:

  
Here is a SmallWorkingExample, which illustrates both issues.
Here the reference to the figure appears as Figure  (no number).

Ehud Kaplan

  
  
Hi Ehud,

Thank you for your example file. However, it is not a working example
file for the following reasons:
1. It does not compile.
2. You did not include your bibtex file. If it's not necessary to
reproduce the problem, then consider not making it a dependency by
including references in your MWE .lyx file.
3. Even if you did include your bibtex file, the path to it is
specific to your computer.
4. You did not include the file p-trode-w-dimensions. Further, because
this file has no name, I have no idea what time of graphic it is. And
thus I have no idea what converter is being called.
5. The path to the picture is not relative.

An MWE (or a SWE) should be compilable out of the box.

You probably didn't send the picture because you didn't want to
increase the size of everyone's inboxes and I appreciate that. But
it's very nice to have an MWE. I wish we had a way where you could
upload your files somewhere and then link to them because not everyone
has access to such a service themselves. Also, you could have used a
1kb picture, or no picture at all, to show the problem.

Regarding your potential bug number 1, I think I see what you are
talking about. Here is the PDF that is produced for me on the
development version of LyX:
https://www.dropbox.com/s/e5rpv153nue0lg0/MWE.pdf
There is no number at all in the reference to the figure. It should be
figure 1 and yet nothing shows up.

Regarding point 2, I didn't try to reproduce this as I have no idea
what converter is being called and I'm not sure if by "any change to
the figure" you mean a change to the file itself, a change to the
properties of the figure, a change to the caption, or maybe all of the
above. Please specify just one action in the steps you give to
reproduce the behavior you found. You can then note that any of
several actions could also be used for that step.

I hope I'm not coming across as upset. I'm not at all. I think that it
takes time to learn how to write a good MWE. I also think that we are
missing documentation on how to make an MWE specifically in the
context of LyX. A search for "MWE" at wiki.lyx.org gives nothing. This
is something I would like to work on documenting. Let me know if you
have any suggestions for me.

My guess is that these are LyX bugs. If you are able and willing to
make MWE(s) (either one that shows both problems, or two separate
ones), it would be great if you could open separate bug reports on
www.lyx.org/trac. Please attach any relevant files to each bug report.

Best,

Scott



-- 
  
  Ehud Kaplan, Ph.D.
  Jules and Doris Stein Research to Prevent Blindness
  Professor
  Director, The laboratory of Visual & Computational
  Neuroscience
  Director, Center for Excellence in Computational &
  Systems Neuroscience
  Friedman Brain Institute
  Departments of Neuroscience, Ophthalmology, Structural &
  Chemical Biology,
  The Ichan school of medicine at Mount Sinai
  One Gustave Levy Place, 
  NY, NY, 10029 

  

Lilypond-Book and Xetex error

[Kale Good]

Hello,
To work around known issues with Lilypond-book, I tried installing the most
recent Lilypond (2.16.2). It solved one problem but created another. When
processing in Xetex, there is a line-break following each measure. There is
no problem when the file is processed with pdflatex.

I'm getting these errors in the messages when processing:

11:43:38.493: lilypond-book: warning: Unable to auto-detect default
settings:
11:43:38.495: xetex: /home/kale/lilypond/usr/lib/libpng12.so.0: no version
information available (required by xetex)
11:43:38.496: xetex: /home/kale/lilypond/usr/lib/libstdc++.so.6: no version
information available (required by xetex)
11:43:38.496: xetex: /home/kale/lilypond/usr/lib/libstdc++.so.6: no version
information available (required by xetex)
11:43:38.496: xetex: /home/kale/lilypond/usr/lib/libstdc++.so.6: no version
information available (required by xetex)
11:43:38.496: xetex: /home/kale/lilypond/usr/lib/libstdc++.so.6: no version
information available (required by xetex)
11:43:38.498: xetex: /home/kale/lilypond/usr/lib/libpng12.so.0: no version
information available (required by
/usr/lib/x86_64-linux-gnu/libpoppler.so.19)
11:43:38.502: xetex: /home/kale/lilypond/usr/lib/libstdc++.so.6: no version
information available (required by
/usr/lib/x86_64-linux-gnu/libpoppler.so.19)
11:43:38.502: xetex: /home/kale/lilypond/usr/lib/libstdc++.so.6: no version
information available (required by
/usr/lib/x86_64-linux-gnu/libpoppler.so.19)
11:43:38.503: xdvipdfmx: /home/kale/lilypond/usr/lib/libpng12.so.0: no
version information available (required by xdvipdfmx)

It seemed that lyx wouldn't pick up the install if lilypond wasn't in
/usr/bin, and I couldn't figure out how to get lilypond to install into
/usr/bin/ (that is, without creating a subdirectory /lilypond), so I copied
the lilypond-book into /usr/bin.

 Here is a minimum (I think) .lyx file:

#LyX 2.0 created this file. For more info see http://www.lyx.org/
\lyxformat 413
\begin_document
\begin_header
\textclass paper
\begin_preamble

\end_preamble
\use_default_options true
\begin_modules
lilypond
\end_modules
\maintain_unincluded_children false
\language english
\language_package default
\inputencoding utf8x
\fontencoding global
\font_roman default
\font_sans default
\font_typewriter default
\font_default_family default
\use_non_tex_fonts false
\font_sc false
\font_osf false
\font_sf_scale 100
\font_tt_scale 100

\graphics default
\default_output_format pdf4
\output_sync 0
\bibtex_command default
\index_command default
\paperfontsize 12
\spacing single
\use_hyperref false
\papersize letterpaper
\use_geometry false
\use_amsmath 1
\use_esint 1
\use_mhchem 1
\use_mathdots 1
\cite_engine basic
\use_bibtopic false
\use_indices false
\paperorientation portrait
\suppress_date true
\use_refstyle 1
\index Index
\shortcut idx
\color #008000
\end_index
\secnumdepth 3
\tocdepth 3
\paragraph_separation indent
\paragraph_indentation default
\quotes_language english
\papercolumns 1
\papersides 1
\paperpagestyle default
\tracking_changes false
\output_changes false
\html_math_output 0
\html_css_as_file 0
\html_be_strict false
\end_header

\begin_body

\begin_layout Standard
\begin_inset Flex LilyPond
status open

\begin_layout Plain Layout

\end_layout

\begin_layout Plain Layout

{ c c c c c }
\end_layout

\begin_layout Plain Layout


\end_layout

\end_inset


\end_layout

\end_body
\end_document

Thanks,
Kale


-- 
*Kale Good: Guitar Instructor*
website: phillyguitarlessons.com
email: k...@kalegood.com
phone: (215)260-5383
address: 1867 Frankford Ave.
  Philadelphia, PA 19125
Read my article "*The Seven Secrets to Six String Success*" at
GuitarNoise.com:
http://www.guitarnoise.com/lesson/seven-secrets-to-six-string-success/
*Leading the Journey from No-Skills-Guitarist to Talented Musician*!

Re: Figure numbers & change tracking

[Scott Kostyshak]

On Fri, Feb 8, 2013 at 11:48 AM, EK  wrote:
> OK-- further research uncovered the culprit for the first issue (the need to
> accept any change made before I could compile).
> In my preamble I had the following:
>
> \usepackage{enumitem}
>
> \setlist{leftmargin=0mm, itemindent=3mm, itemsep=0.75mm,nolistsep}
>
> \usepackage[pdftex,outerbars]{changebar}
>
> \renewcommand{\lyxadded}[3]{{\cbstart\color{lyxadded}{}#3\cbend}}
>
> \renewcommand{\lyxdeleted}[3]{{\cbstart\color{lyxdeleted}\sout{#3}\cbend}}
>
>
> Commenting these lines out solved the problem.  I have not yet discovered
> the reason for the failure to correctly reference a wrap figure in a box.

Thanks for keeping us updated. Hopefully we can figure out the second issue

Best,

Scott

Re: using RevTex 4.1 for journal formatting

[stefano franchi]

On Fri, Feb 8, 2013 at 2:50 PM, Chris Goldenstein wrote:

> *\documentclass[osajnl,preprint,showpacs]{revtex4} %%REVTeX 4.0*
>
> *or*
>
> *\documentclass[12pt]{article} %%LaTeX 2e*
>
> *\usepackage{osajnl}*
>
> The problem is I have no idea where to put these lines of code. Can
> someone please help?
>
>
>
You have two choices:

1. go to Document>>settings>>Document Class and choose article(revtex4)
from the drop down menu. Then, just below, where it says "Class Options"
and in the empty field next to "Custom", type the
options:osajnl,preprint,showpacs*

*2.*  *go to Document>>settings>>Document Class and choose article (*not*
article(revtex4). Then, just below, where it says "Class Options" and in
the empty field next to "Custom", type "12pt"(without the quotes).
Finally,  select "LaTeX preamble" from the list on your left and
type \usepackage{osajnl} in the big blank field at the right.


The two alternatives correspond to the two options you were given. You can
check out if everything worked as planned by selecting View>>View Source
and selecting "Preamble only" on the drop down menu on your right. You
should see exactly what the instructions say.

Cheers,

Stefano

-- 
Christopher S. Goldenstein
Graduate Research Assistant
Stanford University
High Temperature Gasdynamics Laboratory




Long live the tree!!!

-- 
__
Stefano Franchi
Associate Research Professor
Department of Hispanic StudiesPh:   +1 (979) 845-2125
Texas A University  Fax:  +1 (979) 845-6421
College Station, Texas, USA

stef...@tamu.edu
http://stefano.cleinias.org

Re: using RevTex 4.1 for journal formatting

[Chris Goldenstein]

Thanks so much Stefano. That worked!

-chris


On Fri, Feb 8, 2013 at 1:19 PM, stefano franchi
wrote:

>
>
>
> On Fri, Feb 8, 2013 at 2:50 PM, Chris Goldenstein 
> wrote:
>
>> *\documentclass[osajnl,preprint,showpacs]{revtex4} %%REVTeX 4.0*
>>
>> *or*
>>
>> *\documentclass[12pt]{article} %%LaTeX 2e*
>>
>> *\usepackage{osajnl}*
>>
>> The problem is I have no idea where to put these lines of code. Can
>> someone please help?
>>
>>
>>
> You have two choices:
>
> 1. go to Document>>settings>>Document Class and choose article(revtex4)
> from the drop down menu. Then, just below, where it says "Class Options"
> and in the empty field next to "Custom", type the
> options:osajnl,preprint,showpacs*
>
> *2.*  *go to Document>>settings>>Document Class and choose article (*not*
> article(revtex4). Then, just below, where it says "Class Options" and in
> the empty field next to "Custom", type "12pt"(without the quotes).
> Finally,  select "LaTeX preamble" from the list on your left and
> type \usepackage{osajnl} in the big blank field at the right.
>
>
> The two alternatives correspond to the two options you were given. You can
> check out if everything worked as planned by selecting View>>View Source
> and selecting "Preamble only" on the drop down menu on your right. You
> should see exactly what the instructions say.
>
> Cheers,
>
> Stefano
>
> --
> Christopher S. Goldenstein
> Graduate Research Assistant
> Stanford University
> High Temperature Gasdynamics Laboratory
>
>
>
>
> Long live the tree!!!
>
> --
> __
> Stefano Franchi
> Associate Research Professor
> Department of Hispanic StudiesPh:   +1 (979) 845-2125
> Texas A University  Fax:  +1 (979) 845-6421
> College Station, Texas, USA
>
> stef...@tamu.edu
> http://stefano.cleinias.org
>



-- 
Christopher S. Goldenstein
Graduate Research Assistant
Stanford University
High Temperature Gasdynamics Laboratory

Bldg. 570, Room 570B

Re: Lilypond-Book and Xetex error

[Julien Rioux]

On 08/02/2013 12:17 PM, Kale Good wrote:

Hello,
To work around known issues with Lilypond-book, I tried installing the most
recent Lilypond (2.16.2). It solved one problem but created another. When
processing in Xetex, there is a line-break following each measure. There is
no problem when the file is processed with pdflatex.

I'm getting these errors in the messages when processing:

11:43:38.493: lilypond-book: warning: Unable to auto-detect default
settings:
11:43:38.495: xetex: /home/kale/lilypond/usr/lib/libpng12.so.0: no version
information available (required by xetex)
11:43:38.496: xetex: /home/kale/lilypond/usr/lib/libstdc++.so.6: no version
information available (required by xetex)
11:43:38.496: xetex: /home/kale/lilypond/usr/lib/libstdc++.so.6: no version
information available (required by xetex)
11:43:38.496: xetex: /home/kale/lilypond/usr/lib/libstdc++.so.6: no version
information available (required by xetex)
11:43:38.496: xetex: /home/kale/lilypond/usr/lib/libstdc++.so.6: no version
information available (required by xetex)
11:43:38.498: xetex: /home/kale/lilypond/usr/lib/libpng12.so.0: no version
information available (required by
/usr/lib/x86_64-linux-gnu/libpoppler.so.19)
11:43:38.502: xetex: /home/kale/lilypond/usr/lib/libstdc++.so.6: no version
information available (required by
/usr/lib/x86_64-linux-gnu/libpoppler.so.19)
11:43:38.502: xetex: /home/kale/lilypond/usr/lib/libstdc++.so.6: no version
information available (required by
/usr/lib/x86_64-linux-gnu/libpoppler.so.19)
11:43:38.503: xdvipdfmx: /home/kale/lilypond/usr/lib/libpng12.so.0: no
version information available (required by xdvipdfmx)

It seemed that lyx wouldn't pick up the install if lilypond wasn't in
/usr/bin, and I couldn't figure out how to get lilypond to install into
/usr/bin/ (that is, without creating a subdirectory /lilypond), so I copied
the lilypond-book into /usr/bin.

  Here is a minimum (I think) .lyx file:

[...]

Thanks,
Kale




Your file compiles fine here using xelatex and the pdf has only one 
staff line, i.e. no line break. Did you modify or perhaps define the 
converter yourself? I have this for converter from "LilyPond book 
(LaTeX)" to "PDF (XeTeX)":


python "C:\Program Files (x86)\LilyPond\usr\bin\lilypond-book.py" 
--verbose --pdf --latex-program=xelatex --lily-output-dir=ly-pdf -I $$r $$i


I'm using a slightly older version of lilypond, 2.15.40, on Win7, so 
it's possible that something has changed between versions or that the 
behavior is different between OSes.


Cheers,
Julien

Re: Lilypond-Book and Xetex error

[Kale Good]

That was it, thanks. I had edited it (in a completely uninformed way)
trying to solve the fretboard diagram issue, but failed. I updated from
2.14 to 2.16, and no longer have the fretboard diagram issue.


On Fri, Feb 8, 2013 at 6:57 PM, Julien Rioux  wrote:

> On 08/02/2013 12:17 PM, Kale Good wrote:
>
>> Hello,
>> To work around known issues with Lilypond-book, I tried installing the
>> most
>> recent Lilypond (2.16.2). It solved one problem but created another. When
>> processing in Xetex, there is a line-break following each measure. There
>> is
>> no problem when the file is processed with pdflatex.
>>
>> I'm getting these errors in the messages when processing:
>>
>> 11:43:38.493: lilypond-book: warning: Unable to auto-detect default
>> settings:
>> 11:43:38.495: xetex: /home/kale/lilypond/usr/lib/**libpng12.so.0: no
>> version
>> information available (required by xetex)
>> 11:43:38.496: xetex: /home/kale/lilypond/usr/lib/**libstdc++.so.6: no
>> version
>> information available (required by xetex)
>> 11:43:38.496: xetex: /home/kale/lilypond/usr/lib/**libstdc++.so.6: no
>> version
>> information available (required by xetex)
>> 11:43:38.496: xetex: /home/kale/lilypond/usr/lib/**libstdc++.so.6: no
>> version
>> information available (required by xetex)
>> 11:43:38.496: xetex: /home/kale/lilypond/usr/lib/**libstdc++.so.6: no
>> version
>> information available (required by xetex)
>> 11:43:38.498: xetex: /home/kale/lilypond/usr/lib/**libpng12.so.0: no
>> version
>> information available (required by
>> /usr/lib/x86_64-linux-gnu/**libpoppler.so.19)
>> 11:43:38.502: xetex: /home/kale/lilypond/usr/lib/**libstdc++.so.6: no
>> version
>> information available (required by
>> /usr/lib/x86_64-linux-gnu/**libpoppler.so.19)
>> 11:43:38.502: xetex: /home/kale/lilypond/usr/lib/**libstdc++.so.6: no
>> version
>> information available (required by
>> /usr/lib/x86_64-linux-gnu/**libpoppler.so.19)
>> 11:43:38.503: xdvipdfmx: /home/kale/lilypond/usr/lib/**libpng12.so.0: no
>> version information available (required by xdvipdfmx)
>>
>> It seemed that lyx wouldn't pick up the install if lilypond wasn't in
>> /usr/bin, and I couldn't figure out how to get lilypond to install into
>> /usr/bin/ (that is, without creating a subdirectory /lilypond), so I
>> copied
>> the lilypond-book into /usr/bin.
>>
>>   Here is a minimum (I think) .lyx file:
>>
>> [...]
>>
>> Thanks,
>> Kale
>>
>>
>>
> Your file compiles fine here using xelatex and the pdf has only one staff
> line, i.e. no line break. Did you modify or perhaps define the converter
> yourself? I have this for converter from "LilyPond book (LaTeX)" to "PDF
> (XeTeX)":
>
> python "C:\Program Files (x86)\LilyPond\usr\bin\**lilypond-book.py"
> --verbose --pdf --latex-program=xelatex --lily-output-dir=ly-pdf -I $$r $$i
>
> I'm using a slightly older version of lilypond, 2.15.40, on Win7, so it's
> possible that something has changed between versions or that the behavior
> is different between OSes.
>
> Cheers,
> Julien
>



-- 
*Kale Good: Guitar Instructor*
website: phillyguitarlessons.com
email: k...@kalegood.com
phone: (215)260-5383
address: 1867 Frankford Ave.
  Philadelphia, PA 19125
Read my article "*The Seven Secrets to Six String Success*" at
GuitarNoise.com:
http://www.guitarnoise.com/lesson/seven-secrets-to-six-string-success/
*Leading the Journey from No-Skills-Guitarist to Talented Musician*!

Re: Lilypond-Book and Xetex error

[Kale Good]

I spoke a moment too soon, and possibly misdiagnosed from the get-go. With
default fonts, it works. As soon as I try non-default fonts, it reverts to
the incorrect output. Here's my converter command:

lilypond-book --verbose --pdf --latex-program=xelatex
--lily-output-dir=ly-pdf -I $$r $$i

Oddly, it also takes much longer to compile the document.


On Fri, Feb 8, 2013 at 8:14 PM, Kale Good  wrote:

> That was it, thanks. I had edited it (in a completely uninformed way)
> trying to solve the fretboard diagram issue, but failed. I updated from
> 2.14 to 2.16, and no longer have the fretboard diagram issue.
>
>
> On Fri, Feb 8, 2013 at 6:57 PM, Julien Rioux  wrote:
>
>> On 08/02/2013 12:17 PM, Kale Good wrote:
>>
>>> Hello,
>>> To work around known issues with Lilypond-book, I tried installing the
>>> most
>>> recent Lilypond (2.16.2). It solved one problem but created another. When
>>> processing in Xetex, there is a line-break following each measure. There
>>> is
>>> no problem when the file is processed with pdflatex.
>>>
>>> I'm getting these errors in the messages when processing:
>>>
>>> 11:43:38.493: lilypond-book: warning: Unable to auto-detect default
>>> settings:
>>> 11:43:38.495: xetex: /home/kale/lilypond/usr/lib/**libpng12.so.0: no
>>> version
>>> information available (required by xetex)
>>> 11:43:38.496: xetex: /home/kale/lilypond/usr/lib/**libstdc++.so.6: no
>>> version
>>> information available (required by xetex)
>>> 11:43:38.496: xetex: /home/kale/lilypond/usr/lib/**libstdc++.so.6: no
>>> version
>>> information available (required by xetex)
>>> 11:43:38.496: xetex: /home/kale/lilypond/usr/lib/**libstdc++.so.6: no
>>> version
>>> information available (required by xetex)
>>> 11:43:38.496: xetex: /home/kale/lilypond/usr/lib/**libstdc++.so.6: no
>>> version
>>> information available (required by xetex)
>>> 11:43:38.498: xetex: /home/kale/lilypond/usr/lib/**libpng12.so.0: no
>>> version
>>> information available (required by
>>> /usr/lib/x86_64-linux-gnu/**libpoppler.so.19)
>>> 11:43:38.502: xetex: /home/kale/lilypond/usr/lib/**libstdc++.so.6: no
>>> version
>>> information available (required by
>>> /usr/lib/x86_64-linux-gnu/**libpoppler.so.19)
>>> 11:43:38.502: xetex: /home/kale/lilypond/usr/lib/**libstdc++.so.6: no
>>> version
>>> information available (required by
>>> /usr/lib/x86_64-linux-gnu/**libpoppler.so.19)
>>> 11:43:38.503: xdvipdfmx: /home/kale/lilypond/usr/lib/**libpng12.so.0: no
>>> version information available (required by xdvipdfmx)
>>>
>>> It seemed that lyx wouldn't pick up the install if lilypond wasn't in
>>> /usr/bin, and I couldn't figure out how to get lilypond to install into
>>> /usr/bin/ (that is, without creating a subdirectory /lilypond), so I
>>> copied
>>> the lilypond-book into /usr/bin.
>>>
>>>   Here is a minimum (I think) .lyx file:
>>>
>>> [...]
>>>
>>> Thanks,
>>> Kale
>>>
>>>
>>>
>> Your file compiles fine here using xelatex and the pdf has only one staff
>> line, i.e. no line break. Did you modify or perhaps define the converter
>> yourself? I have this for converter from "LilyPond book (LaTeX)" to "PDF
>> (XeTeX)":
>>
>> python "C:\Program Files (x86)\LilyPond\usr\bin\**lilypond-book.py"
>> --verbose --pdf --latex-program=xelatex --lily-output-dir=ly-pdf -I $$r $$i
>>
>> I'm using a slightly older version of lilypond, 2.15.40, on Win7, so it's
>> possible that something has changed between versions or that the behavior
>> is different between OSes.
>>
>> Cheers,
>> Julien
>>
>
>
>
> --
> *Kale Good: Guitar Instructor*
> website: phillyguitarlessons.com
> email: k...@kalegood.com
> phone: (215)260-5383
> address: 1867 Frankford Ave.
>   Philadelphia, PA 19125
> Read my article "*The Seven Secrets to Six String Success*" at
> GuitarNoise.com:
> http://www.guitarnoise.com/lesson/seven-secrets-to-six-string-success/
> *Leading the Journey from No-Skills-Guitarist to Talented Musician*!
>



-- 
*Kale Good: Guitar Instructor*
website: phillyguitarlessons.com
email: k...@kalegood.com
phone: (215)260-5383
address: 1867 Frankford Ave.
  Philadelphia, PA 19125
Read my article "*The Seven Secrets to Six String Success*" at
GuitarNoise.com:
http://www.guitarnoise.com/lesson/seven-secrets-to-six-string-success/
*Leading the Journey from No-Skills-Guitarist to Talented Musician*!

Re: Problems with Windows installation [solved]

[Denis J Navas]

In a different group, was informed that CTAN deprecated amsmath and  
replaced with two packages.  Probably this is the cause to the lack of  
compilation.  MikTeX was actualizing a change that was not anounced to the  
user.

Re: Lilypond-Book and Xetex error

[Julien Rioux]

On 08/02/2013 8:36 PM, Kale Good wrote:

I spoke a moment too soon, and possibly misdiagnosed from the get-go. With
default fonts, it works. As soon as I try non-default fonts, it reverts to
the incorrect output. Here's my converter command:

lilypond-book --verbose --pdf --latex-program=xelatex
--lily-output-dir=ly-pdf -I $$r $$i

Oddly, it also takes much longer to compile the document.





Hi,
Again, works here. Can you please attach the file that fails for you? 
Does the issue resolve itself if you save the file, close it and reopen 
it? I am thinking that maybe something, that prevents compilation, is 
left out in the temporary build directory when you switch font.


Thanks,
Cheers,
Julien


xetex.lyx
Description: application/lyx


xetex.pdf
Description: Adobe PDF document