Re: import bib refs to show in pdf?
Am Monday 13 July 2009 05:44:23 schrieb Sebastian Stolzenberg: > Hi rh, Hi All, > > Thanks for the reply; attached, please find my test files, that do not > work now on my ubuntu machine with LyX 1.6.0. > > I found the command "bibtex" in test.lyx, so I manually ran bibtex on > test.bib, with the error message that "test.bib.aux" is not found. I am > not even close to the actual problem, am I? ;-) should'nt it be test.aux ? run bibtex test and not bibtex test.bib manually Wolfgang > > Thank you > Sebastian > > Sebastian Stolzenberg wrote: > > Dear All, > > > > I installed the latest Lyx version 1.6.3 on my Mac 10.4.11 > > > > Everything behaves normal, in particular, I can export pdfs and easily > > import a *.bib into my Bibliography section and LyX recognizes all the > > references in it. > > > > However, trying to export this document with references into pdf, the > > references do not appear and all my citation show question tags. > > > > Any help is much appreciated, > > Sebastian -- - Wolfgang Engelmann Schlossgartenstrasse 22 D-72070 Tübingen Tel 07071 68325
Re: Document Include mechanism
Am Montag 13 Juli 2009 04:01:01 schrieb rgheck: > That said, there probably is a bug here, especially now that we have > this "default master" setting. A child should probably inherit the > document class of its master, and its modules and such, too. I'm not > sure how well we do with that. Only if it is exported with the master-buffer-* lfuns. The default master is not supposed to exclude stand-alone usage. Jürgen
Re: import bib refs to show in pdf?
Hi rh, Hi All, Thanks for the reply; attached, please find my test files, that do not work now on my ubuntu machine with LyX 1.6.0. I found the command "bibtex" in test.lyx, so I manually ran bibtex on test.bib, with the error message that "test.bib.aux" is not found. I am not even close to the actual problem, am I? ;-) Thank you Sebastian Sebastian Stolzenberg wrote: Dear All, I installed the latest Lyx version 1.6.3 on my Mac 10.4.11 Everything behaves normal, in particular, I can export pdfs and easily import a *.bib into my Bibliography section and LyX recognizes all the references in it. However, trying to export this document with references into pdf, the references do not appear and all my citation show question tags. Any help is much appreciated, Sebastian % This file was created with JabRef 2.3.1. % Encoding: UTF-8 @ARTICLE{Brooks1983, author = {Brooks, Bernard R. and Bruccoleri, Robert E. and Olafson, Barry D. and States, David J. and Swaminathan, S. and Karplus, Martin}, title = {CHARMM: A program for macromolecular energy, minimization, and dynamics calculations}, journal = {Journal of Computational Chemistry}, year = {1983}, volume = {4}, pages = {187--217}, number = {2}, abstract = {CHARMM (Chemistry at HARvard Macromolecular Mechanics) is a highly flexible computer program which uses empirical energy functions to model macromolecular systems. The program can read or model build structures, energy minimize them by first- or second-derivative techniques, perform a normal mode or molecular dynamics simulation, and analyze the structural, equilibrium, and dynamic properties determined in these calculations. The operations that CHARMM can perform are described, and some implementation details are given. A set of parameters for the empirical energy function and a sample run are included.}, file = {Brooks1983_CHARMM- A program for macromolecular energy, minimization, and dynamics calculations.pdf:pdf-refs/Brooks1983_CHARMM- A program for macromolecular energy, minimization, and dynamics calculations.pdf:PDF}, owner = {sebastian}, timestamp = {2009.05.24}, url = {http://dx.doi.org/10.1002/jcc.540040211} } @comment{jabref-meta: selector_publisher:} @comment{jabref-meta: selector_author:} @comment{jabref-meta: selector_journal:} @comment{jabref-meta: selector_keywords:} @comment{jabref-meta: groupsversion:3;} @comment{jabref-meta: groupstree: 0 AllEntriesGroup:; 1 ExplicitGroup:GluT\;2\;; 2 ExplicitGroup:Scaffolding proteins\;2\;Waxman2007\;; 3 ExplicitGroup:C-terminals\;2\;Gonzalez2003\;Gonzalez2004a\;Jackson20 01\;Kalandadze2002\;Lin2001\;; 3 ExplicitGroup:N-terminals\;2\;Marie2002\;; 3 ExplicitGroup:general\;2\;Gonzalez2004\;Torres2007\;; 2 ExplicitGroup:Cluster Formation\;2\;Nakagawa2008\;Peacey2009\;Zhou20 04\;; 2 ExplicitGroup:Recycling\;2\;Voglmaier2006\;; 2 ExplicitGroup:Hotspot Residues\;2\;Zhang1999\;; 2 ExplicitGroup:Reviews\;2\;Torres2007\;Tzingounis2007\;Vandenberg2008 \;; 2 ExplicitGroup:experimental hints\;2\;Seal2001\;Shachnai2005\;Tao2007 \;Zerangue1996\;Zhang1998\;; 3 ExplicitGroup:near HP2b tip\;2\;Kavanaugh1997\;Tao2007\;; 3 ExplicitGroup:NA3binding site\;2\;Rosental2006\;Tao2006\;; 3 ExplicitGroup:Proton transport\;2\;Fairman1998\;; 3 ExplicitGroup:Chloride conductance\;2\;Fairman1995\;; 3 ExplicitGroup:Substrate Transport\;2\;Ryan2009\;; 2 ExplicitGroup:other MD sims\;2\;Gu2009\;Huang2008\;Huang2009\;Shriva stava2008\;; 2 ExplicitGroup:Sodium binding\;2\;Gouaux2005\;Noskov2007\;; 2 ExplicitGroup:Boudker and Structure\;2\;Boudker2007\;Gendreau2004\;G roeneveld2007\;Yernool2003\;Yernool2004\;; 2 ExplicitGroup:useful parameters for MD\;2\;Fuchs2006\;; 1 ExplicitGroup:NMA\;2\;Bahar2005\;Niv2008\;Riccardi2009\;Schulz2009\; Sherwood2008\;Suhre2004\;Tozzini2005\;; 2 ExplicitGroup:unread\;2\;Bahar2005\;Chu2007\;Franklin2007\;Schroeder 2007\;Schulz2009\;Sherwood2008\;Yang2007\;Zheng2007a\;Zheng2007b\;; 2 ExplicitGroup:reviews\;2\;Tozzini2005\;; 2 ExplicitGroup:clap-motions\;2\;Zheng2007\;; 2 ExplicitGroup:Structure-refinements\;2\;Schroeder2007\;; 2 ExplicitGroup:perturbed NMA\;2\;Ming2006\;Ming2008\;Schuyler2009\;Te hver2008\;Zheng2009\;; 2 ExplicitGroup:Willy R. Wriggers\;2\;Jeong2006\;; 2 ExplicitGroup:Spencer Erickson\;2\;Sanejouand2004\;Tama2001\;; 2 ExplicitGroup:multiple-basin-interpolation\;2\;Best2005\;Clementi200 0\;Maragakis2005\;Nakamura2004\;Okazaki2006\;Pan2008\;Ueda1978\;Yang20 09\;; 2 ExplicitGroup:NMA-MD\;2\;Sweet2008\;; 2 ExplicitGroup:general\;2\;Ma2005\;Monod1965\;Rzehak2002\;; 1 ExplicitGroup:MD\;2\;Kandt2007\;Maragakis2008\;Shaw2005\;; 2 ExplicitGroup:unread\;2\;Maragakis2008\;Sankararamakrishnan2000\;; 2 ExplicitGroup:Trajectories\;2\;Raveh2009\;; 2 ExplicitGroup:Nose\;2\;Evans1985\;Nose1984\;; 2 ExplicitGroup:PMF\;2\;Allen2006\;; 2 ExplicitGroup:General\;2\;Harvey1998\;Mackerell2004\;; 2 ExplicitGroup:Lipids (i think i got this from anshu)\;2\;; 2 ExplicitGroup:Protein Folding\;2\;Scheraga2007\;; 1 Expl
Re: Document Include mechanism
On 07/12/2009 12:57 PM, James Mansion wrote: Richard Heck wrote: On 07/12/2009 07:46 AM, James Mansion wrote: I may be doing the wrong thing - but I stared trying to write a book with each Part in a separate document so I can edit (and version control) them in more manageable chunks. This seems to be working though I find the inability to nest inclusions a bit disturbing. What do you mean by this? You can have children of children of children. No I can't. When I got Ctrl-D I get a dialog that says: LaTeX Error: \include cannot be nested. and the Description is: \include{0C__src_books_arch_test} Your command was ignored. Type I to replace it with another command, or to continue without it. Use Input rather than Include. That should probably be the default. What is more worrying is that I don't seem to be able to set the document class and LaTeX preamble on the master and have it inherited to new components --- I have to set the class of each one. To some extent, this is a known issue, and there is a sense in which it can't be solved. If you treat the file as a file unto itself, then it needs its own document class, preamble, etc. And sometimes a file can be both a child of another document and a file unto itself. And for the same reason you do always have to set the document class. I think that's a weak answer. I don't *need* the children to be valid as self-contained documents. What I would like is to be able to set a docu class (optionally) but to have it ignored and defer to the parent in the case where its a child. I understand what you want. What I was explaining is why LyX can't just work the way you want. We have had lengthy discussions about this both on this list and on the devel list, and there are a lot of people who need the facility I described. So we provide that, and people who don't need that facility---like you and me--- have to make do. That said, there probably is a bug here, especially now that we have this "default master" setting. A child should probably inherit the document class of its master, and its modules and such, too. I'm not sure how well we do with that. Richard
import bib refs to show in pdf?
Dear All, I installed the latest Lyx version 1.6.3 on my Mac 10.4.11 Everything behaves normal, in particular, I can export pdfs and easily import a *.bib into my Bibliography section and LyX recognizes all the references in it. However, trying to export this document with references into pdf, the references do not appear and all my citation show question tags. Any help is much appreciated, Sebastian
Re: Program listings with beamer probelm
Micha Feigin wrote: Hello, I'm trying ot include a program listing in a beamer presentation. Using just the simple insert->program listing fails to compile with an error Paragraph ended before \...@next was complete. If I set the listing to inline, compilation works but the listing is completely messed up (lines are in the wrong order, some line breaks are missing ...). Inserting a listing from file (insert->file->child document->program listing) works, but is very annoying for short ones Any way to solve this? thanks Seems from a thread I found that I need to somehow add fragile to the frame but I can't figure out how to do it without ert. Seems like the \lyxframe macro is rather messed up. I tried using insert short title which adds an opt entry but that gives an error that the pdf file can't be found
Program listings with beamer probelm
Hello, I'm trying ot include a program listing in a beamer presentation. Using just the simple insert->program listing fails to compile with an error Paragraph ended before \...@next was complete. If I set the listing to inline, compilation works but the listing is completely messed up (lines are in the wrong order, some line breaks are missing ...). Inserting a listing from file (insert->file->child document->program listing) works, but is very annoying for short ones Any way to solve this? thanks
Re: Multiple Language Quotation Problem
Thanks for the analysis. I have submitted a bug report here: http://www.lyx.org/trac/ticket/6073
Re: caption for long table in list of tables
> the problem is that I am getting an entry for each page in the list of > tables Is there a way to get only one entry? This bug has now been fixed for the next LyX version. regards Uwe
Re: Document Include mechanism
Richard Heck wrote: On 07/12/2009 07:46 AM, James Mansion wrote: I may be doing the wrong thing - but I stared trying to write a book with each Part in a separate document so I can edit (and version control) them in more manageable chunks. This seems to be working though I find the inability to nest inclusions a bit disturbing. What do you mean by this? You can have children of children of children. No I can't. When I got Ctrl-D I get a dialog that says: LaTeX Error: \include cannot be nested. and the Description is: \include{0C__src_books_arch_test} Your command was ignored. Type I to replace it with another command, or to continue without it. What is more worrying is that I don't seem to be able to set the document class and LaTeX preamble on the master and have it inherited to new components --- I have to set the class of each one. To some extent, this is a known issue, and there is a sense in which it can't be solved. If you treat the file as a file unto itself, then it needs its own document class, preamble, etc. And sometimes a file can be both a child of another document and a file unto itself. And for the same reason you do always have to set the document class. I think that's a weak answer. I don't *need* the children to be valid as self-contained documents, What I would like is to be able to set a docu class (optionally) but to have it ignored and defer to the parent in the case where its a child. The only annoyance here is that you will get an error message when you compile, saying that the document classes are different. Then you can fix it. Not if the problem is that I didn't copy across a preamble element. James
Re: Label and againframe [Beamer]
Exactly. I want to repeat the 'title slide'... It's possible? On Sun, Jul 12, 2009 at 10:49 AM, Paul A. Rubin wrote: > I'm afraid what you wrote does not make sense. You start your presentation > with title and authors. Then you have your content, with the first slide of > content started with a BeginFrame environment (the equivalent of the > \begin{frame}[label=firstframe] LaTeX command you wrote below. > > Or are you saying you want to repeat the title slide at the end?? > > /Paul > > Christian Bustamante wrote: >> >> Hi Paul, >> I understand the procedure to repeat a simple slide. My problem is >> whit the first one, because you don't use the BeginFrame environment >> at all. At the start of file, you simple put the title and authors, >> but not more how can I do it for the first slide?? >> Bests >> >> >> >> On Sun, Jul 12, 2009 at 9:47 AM, Paul A. Rubin wrote: >>> >>> Christian Bustamante wrote: Hi all, I'm using the beamer class and I need to repeat the first slide at the end of presentation. In plain LaTeX one can do the following \documentclass{beamer} \title[Short title]{The title} \author[Authors]{Author 1 \and Author 2} \date{\today} \begin{document} \begin{frame}[label=firstframe] \titlepage \end{frame} ... \againframe{firstframe} \end{document} Which uses the againframe command. The thing is, how can I label the first slide for then use the againframe in LyX? >>> Put the cursor in the BeginFrame environment for the slide to be >>> repeated, >>> directly to the left of the first letter of the title, and insert >>> '[label=firstframe]' (including the brackets) in an ERT inset. At the >>> point >>> where you want to repeat the slide, use an AgainFrame environment and >>> just >>> type 'firstframe' as if it were a title. >>> >>> /Paul >>> >>> >> >> >> > > -- CdeB
Re: Label and againframe [Beamer]
I'm afraid what you wrote does not make sense. You start your presentation with title and authors. Then you have your content, with the first slide of content started with a BeginFrame environment (the equivalent of the \begin{frame}[label=firstframe] LaTeX command you wrote below. Or are you saying you want to repeat the title slide at the end?? /Paul Christian Bustamante wrote: Hi Paul, I understand the procedure to repeat a simple slide. My problem is whit the first one, because you don't use the BeginFrame environment at all. At the start of file, you simple put the title and authors, but not more how can I do it for the first slide?? Bests On Sun, Jul 12, 2009 at 9:47 AM, Paul A. Rubin wrote: Christian Bustamante wrote: Hi all, I'm using the beamer class and I need to repeat the first slide at the end of presentation. In plain LaTeX one can do the following \documentclass{beamer} \title[Short title]{The title} \author[Authors]{Author 1 \and Author 2} \date{\today} \begin{document} \begin{frame}[label=firstframe] \titlepage \end{frame} ... \againframe{firstframe} \end{document} Which uses the againframe command. The thing is, how can I label the first slide for then use the againframe in LyX? Put the cursor in the BeginFrame environment for the slide to be repeated, directly to the left of the first letter of the title, and insert '[label=firstframe]' (including the brackets) in an ERT inset. At the point where you want to repeat the slide, use an AgainFrame environment and just type 'firstframe' as if it were a title. /Paul
Re: Label and againframe [Beamer]
Hi Paul, I understand the procedure to repeat a simple slide. My problem is whit the first one, because you don't use the BeginFrame environment at all. At the start of file, you simple put the title and authors, but not more how can I do it for the first slide?? Bests On Sun, Jul 12, 2009 at 9:47 AM, Paul A. Rubin wrote: > Christian Bustamante wrote: >> >> Hi all, >> >> I'm using the beamer class and I need to repeat the first slide at the >> end of presentation. In plain LaTeX one can do the following >> >> \documentclass{beamer} >> \title[Short title]{The title} >> \author[Authors]{Author 1 \and Author 2} >> \date{\today} >> \begin{document} >> \begin{frame}[label=firstframe] >> \titlepage >> \end{frame} >> ... >> \againframe{firstframe} >> \end{document} >> >> Which uses the againframe command. The thing is, how can I label the >> first slide for then use the againframe in LyX? >> > > Put the cursor in the BeginFrame environment for the slide to be repeated, > directly to the left of the first letter of the title, and insert > '[label=firstframe]' (including the brackets) in an ERT inset. At the point > where you want to repeat the slide, use an AgainFrame environment and just > type 'firstframe' as if it were a title. > > /Paul > > -- CdeB
Re: Document Include mechanism
On 07/12/2009 07:46 AM, James Mansion wrote: I may be doing the wrong thing - but I stared trying to write a book with each Part in a separate document so I can edit (and version control) them in more manageable chunks. This seems to be working though I find the inability to nest inclusions a bit disturbing. What do you mean by this? You can have children of children of children. What is more worrying is that I don't seem to be able to set the document class and LaTeX preamble on the master and have it inherited to new components --- I have to set the class of each one. To some extent, this is a known issue, and there is a sense in which it can't be solved. If you treat the file as a file unto itself, then it needs its own document class, preamble, etc. And sometimes a file can be both a child of another document and a file unto itself. And for the same reason you do always have to set the document class. That said, try setting a default master document at Document>Settings. Then when you open the file, it will be treated as a child of that master. This solves a lot of the problems. I'm a bit concerned that if I change the document class (its currently Koma book, but I might want to change this) it will be quite messy and some inconsistencies might sneak in. The only annoyance here is that you will get an error message when you compile, saying that the document classes are different. Then you can fix it. The help files (at least on 1.6.2) don't seem to deal with sturcturing large projects at all - are there other hints and tips I can use? It might be good to start a wiki page on this. Then when some stuff is collected, it could be added to one of the docs. rh
Re: Where to change the PDF viewer lyx version 1.6.3.......
On 07/12/2009 02:39 AM, M-L wrote: Hello Everyone, Am using Debian Squeeze LyX version 1.6.3. Everything KDE is taking ages to load at the moment, so I need to change my PDF viewer from KPDF to XPDF, but I don't know how that might be done. Tools>Preferences>File Handling>File Formats. Choose one of the PDF formats (whichever one you use) and put the viewer you want in there. rh
Re: Label and againframe [Beamer]
Christian Bustamante wrote: Hi all, I'm using the beamer class and I need to repeat the first slide at the end of presentation. In plain LaTeX one can do the following \documentclass{beamer} \title[Short title]{The title} \author[Authors]{Author 1 \and Author 2} \date{\today} \begin{document} \begin{frame}[label=firstframe] \titlepage \end{frame} ... \againframe{firstframe} \end{document} Which uses the againframe command. The thing is, how can I label the first slide for then use the againframe in LyX? Put the cursor in the BeginFrame environment for the slide to be repeated, directly to the left of the first letter of the title, and insert '[label=firstframe]' (including the brackets) in an ERT inset. At the point where you want to repeat the slide, use an AgainFrame environment and just type 'firstframe' as if it were a title. /Paul
Document Include mechanism
I may be doing the wrong thing - but I stared trying to write a book with each Part in a separate document so I can edit (and version control) them in more manageable chunks. This seems to be working though I find the inability to nest inclusions a bit disturbing. What is more worrying is that I don't seem to be able to set the document class and LaTeX preamble on the master and have it inherited to new components --- I have to set the class of each one. I'm a bit concerned that if I change the document class (its currently Koma book, but I might want to change this) it will be quite messy and some inconsistencies might sneak in. I guess I could give in and just have one big document but as a developer that just feels all wrong somehow. The help files (at least on 1.6.2) don't seem to deal with sturcturing large projects at all - are there other hints and tips I can use? James
Re: Where to change the PDF viewer lyx version 1.6.3....... solved....
On Sun, 12 Jul 2009 10:19:54 +0200 Ignacio García shared this with is all on the Lyx users list: >> I looked there, but there was only one file format in evidence being: >> BibTex and no other. So I created one for PDF, and used XPDF as the >> viewer. It still loaded KPDF. > >The Format list is a pull-down (long) one, clic you the button to see >it. You can get more info in the section C.7.2 of the User Guide >manual and 3.1 of the Customization manual (Help Menu) Thank you Ignatio. Be well, Charlie -- Registered Linux User:- 329524 *** If a man constantly aspires is he not elevated? ...Henry David Thoreau *** Debian, just the best way to create magic ___
Re: Where to change the PDF viewer lyx version 1.6.3....... solved....
M-L wrote, 12 Jul 2009 > I looked there, but there was only one file format in evidence being: > BibTex and no other. So I created one for PDF, and used XPDF as the > viewer. It still loaded KPDF. The Format list is a pull-down (long) one, clic you the button to see it. You can get more info in the section C.7.2 of the User Guide manual and 3.1 of the Customization manual (Help Menu) > But it's solved anyway. A reboot of the system and the KDE stuff loaded > as normal. I'm just not accustomed to doing the windows reboot stuff to > get things working in Linux. There is no need reboot the system. For some configuration changes LyX may need a Tools > Reconfigure and restart LyX. Regards Ignacio García
Consolidating the bibliography for article submissions
Dear all, Is there any easy way to convert a bibtex list of references in part of a .tex document? I know the roundabout way which consists of exporting the lyx document to LaTeX, and then copying back the list of references from the .bbl file. A Lyx plugin to do this would be extremely useful. Many publishers accept LaTeX submissions but, I think, it is somewhat untidy to send the .tex file and the .bib files separately, while going through the .bbl route is a real pain in the neck. Thanks. Cheers, Manolo
Re: Where to change the PDF viewer lyx version 1.6.3....... solved....
On Sun, 12 Jul 2009 09:22:42 +0200 Ignacio García shared this with is all on the Lyx users list: >M-L wrote, Sat, 11 Jul 2009 >> Everything KDE is taking ages to load at the moment, so I need to >> change my PDF viewer from KPDF to XPDF, but I don't know how that >> might be done. > >Tools > Preferences > File Handling > File Formats > >and then, in Format there is a list where you can choose the wanted >file format. There are several PDF (...) entries. Below the list you >can change the Viewer. If you "Apply" the change is temporary, e.g. >for testing, if you "Save" the change is permanent. > >Ignacio García Thanks Ignacio, I looked there, but there was only one file format in evidence being: BibTex and no other. So I created one for PDF, and used XPDF as the viewer. It still loaded KPDF. But it's solved anyway. A reboot of the system and the KDE stuff loaded as normal. I'm just not accustomed to doing the windows reboot stuff to get things working in Linux. Thanks for taking the time to suggest a fix, it's appreciated Be well, Charlie -- Registered Linux User:- 329524 *** Read the best books first, or you may not have a chance to read them at all. ...Henry David Thoreau *** Debian, just the best way to create magic ___
Re: Where to change the PDF viewer lyx version 1.6.3.......
M-L wrote, Sat, 11 Jul 2009 > Everything KDE is taking ages to load at the moment, so I need to > change my PDF viewer from KPDF to XPDF, but I don't know how that might > be done. Tools > Preferences > File Handling > File Formats and then, in Format there is a list where you can choose the wanted file format. There are several PDF (...) entries. Below the list you can change the Viewer. If you "Apply" the change is temporary, e.g. for testing, if you "Save" the change is permanent. Ignacio García