Re: [Important] New behavior for spam handling on this list

2022-04-07 Thread Rich Shepard via lyx-users

On Thu, 7 Apr 2022, Steve Litt via lyx-users wrote:


In my opinion, this list is so welcoming that there's little remaining low
hanging fruit remaining to make the list even more welcoming, so I still
think enabling non-subscribers to post is unnecessary and has downsides.


+1

Most mail lists require a subscription to post messages. This is certainly
reasonable. Even when an occasional LyX user has a question or problem and
wants help from mail list subscribers, it's not askting too much to have
them subscribe. They could always unsubscribe if they don't want to continue
receiving messages.

One apparently recent list change I'd like to see reversed is having the
Reply-To address point to the sender and the From address to the mail list.
Since it's the general practice to respond to threads by sending to the list
the default of Reply-To should be the mail list. At least, that's the way
it's always been in pine and alpine.

My $0.25 worth (taking inflation into consideration),

Rich



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Mail list headers have changed

2022-03-25 Thread Rich Shepard via lyx-users

When I reply to a mail list message, including the lyx mail list, I select
'reply to all' in alpine. This has always sent the message to the mail list.
Today, all responses to my Modern CV issue have reply to set to the
individual while from is set to the sender's name at
lyx-users@lists.lyx.org. Not only does this appear backwards to me, but it
forces me to delete the to address and manually type in the list's name.

Can this change be undone?

Rich
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Re: Issue with ModernCV class

2022-03-25 Thread Rich Shepard via lyx-users

On Fri, 25 Mar 2022, Jürgen Spitzmüller via lyx-users wrote:


Language default for English in LyX 2.3 is latin9 (ISO-8859-15). This is
independent of your OS defaults. IIRC ModernCV internally forces utf8,
which causes an inputenc clash.


Jürgen,

Okay; I've no quibble with this. However, I've not before had any issues
with using 'Language defaults'. But, I did make the change.

Thank you,

Rich
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Re: Best reference manger

2022-03-25 Thread Rich Shepard via lyx-users

On Thu, 24 Mar 2022, Lou via lyx-users wrote:


Is jabref the best way to find and cite bibliography references in Lyx? Is
there a better, easier way?


Lou,

'Best way and better way' vary with each individual user. I've tried a
couple of different ones over the decades, and found that while JabRef's UI
has changed over time I'm used to it and it does the job very well.

Take the time to understand it and it will do what you want and need.

Regards,

Rich



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Re: Issue with ModernCV class

2022-03-25 Thread Rich Shepard via lyx-users

On Fri, 25 Mar 2022, Jürgen Spitzmüller via lyx-users wrote:


Try to set the encoding to "Unicode (utf8)" in Document > Language.


Jürgen,

The encoding is set to language default, and the system is set to UTF-8 for
English.

And it was the page headings not being set to 'Default' that caused the
problems.

Thanks,

Rich
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Re: Issue with ModernCV class [FIXED]

2022-03-25 Thread Rich Shepard via lyx-users

On Thu, 24 Mar 2022, Paul A. Rubin via lyx-users wrote:


Compiling your MWE, I did not run into the error message you mentioned. I
did get an "Undefined control sequence" error for the line
"\pagestyle{headings}", which I believe is caused by the fact that the
Modern CV class, unlike say the standard article class, does not define a
heading style. In Documents > Settings > Page Layout, I changed the "Page
style:" selection from "headings" to "Default", after which the MWE
compiled. (Whether it looks right is left to the reader as an exercise.)


Paul,

Thank you. For some reason the 'Page style' originally was Fancy and I
changed it to Headings. Just now changed it to Default.

Saved the document and compiled. An error appeared saying section headings
were inappropriate, but there are no section headings specified. Recompiled
and it completed without errors. Shrug.

How it changed since the last time I edited it several years ago I've no
idea. But now it's fixed.

Carpe weekend,

Rich
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Issue with ModernCV class

2022-03-24 Thread Rich Shepard via lyx-users

In my resume using the Modern CV class the preamble has no fancyhdr package
specified, yet there's still an error; the displayed message box shows,
'option class for package inputenc'. And it seems to find the fancyhdr
package although it's not called for in the preamble.

A MWE is attached.

TIA,

Rich
#LyX 2.3 created this file. For more info see http://www.lyx.org/
\lyxformat 544
\begin_document
\begin_header
\save_transient_properties true
\origin unavailable
\textclass moderncv
\begin_preamble
% adjust the page margins
\usepackage[scale=0.75]{geometry}

\moderncvtheme[black]{classic}
% possible themes are "classic" and "casual"
% optional argument are 'blue' (default), 'orange', 'red', 'green', 'grey' and 
'roman' (for roman fonts, instead of sans serif fonts)

% required
\firstname{Richard B.}
% required
\familyname{Shepard, PhD}

% optional, remove the line if not wanted
\title{R{\'e}sum{\'e}}

% optional
% \address{street and number}{postcode city}
% '\\' adds a line break
\address{2404 SW 22nd St}{Troutdale, OR 97060\protect\\[0.1em] 
\protect\\[0.2em]}

% optional
\phone{503-667-4517}
% optional
\mobile{503-730-1423}
% optional
\fax{503-667-8863}
% optional
\email{rshep...@appl-ecosys.com}
% optional
\extrainfo{www.appl-ecosys.com}

% optional
% \photo[height]{name}
% 'height' is the height the picture is resized to
% 'name' is the name of the picture file
% photo[64pt]{CV-image}

% optional
% quote{"You only live twice." (an optional quote)}
\end_preamble
\use_default_options false
\maintain_unincluded_children false
\language english
\language_package default
\inputencoding auto
\fontencoding global
\font_roman "default" "default"
\font_sans "default" "default"
\font_typewriter "default" "default"
\font_math "auto" "auto"
\font_default_family default
\use_non_tex_fonts false
\font_sc false
\font_osf false
\font_sf_scale 100 100
\font_tt_scale 100 100
\use_microtype false
\use_dash_ligatures false
\graphics default
\default_output_format default
\output_sync 0
\bibtex_command default
\index_command default
\paperfontsize 10
\spacing single
\use_hyperref false
\papersize letterpaper
\use_geometry false
\use_package amsmath 1
\use_package amssymb 1
\use_package cancel 1
\use_package esint 1
\use_package mathdots 1
\use_package mathtools 1
\use_package mhchem 1
\use_package stackrel 1
\use_package stmaryrd 1
\use_package undertilde 1
\cite_engine natbib
\cite_engine_type authoryear
\biblio_style plain
\use_bibtopic false
\use_indices false
\paperorientation portrait
\suppress_date false
\justification true
\use_refstyle 0
\use_minted 0
\index Index
\shortcut idx
\color #008000
\end_index
\secnumdepth 0
\tocdepth -1
\paragraph_separation skip
\defskip medskip
\is_math_indent 0
\math_numbering_side default
\quotes_style english
\dynamic_quotes 0
\papercolumns 1
\papersides 2
\paperpagestyle headings
\tracking_changes false
\output_changes false
\html_math_output 0
\html_css_as_file 0
\html_be_strict false
\end_header

\begin_body

\begin_layout Standard
\begin_inset ERT
status collapsed

\begin_layout Plain Layout


\backslash
maketitle
\end_layout

\end_inset


\end_layout

\begin_layout Section
Summary
\end_layout

\begin_layout ListItem
here's a item.
\end_layout

\begin_layout Standard

\end_layout

\end_body
\end_document
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Re: dictionary

2022-01-28 Thread Rich Shepard via lyx-users

On Fri, 28 Jan 2022, Patrick Dupre wrote:


Unfortunately, the answer is negative.


Patrick,

Then you apparently have no personal word list/dictionary. On my system I
have:
$ find . -name pwl*.dict
./.lyx/pwl_american.dict
./.lyx/pwl_english.dict

When you check spelling in a document have you ever added a new word that's
not in the default dictionary? I believe that creates and uses a pwl; others
will tell you if I'm wrong.

Good luck,

Rich
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Re: dictionary

2022-01-28 Thread Rich Shepard via lyx-users

On Fri, 28 Jan 2022, Patrick Dupre via lyx-users wrote:


It is where I expected
~/.lyx
I run linux
But I do not see:


Patrick,


From your home directory (~/) use the command

find . -name pwl*.dict
and it should show you the location of all dictionaries.

HTH,

Rich
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Re: pdflatex: cannot find scrpage2.sty

2021-12-20 Thread Rich Shepard via lyx-users

On Mon, 20 Dec 2021, Jürgen Spitzmüller via lyx-users wrote:


(Whereas the original German version, l2tabu, is of 2016 and also
correctly advises to replace scrpage2 by scrlayer-scrpage.


Jürgen,

I've downloaded both versions.

Thanks very much,

Rich
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Re: pdflatex: cannot find scrpage2.sty

2021-12-20 Thread Rich Shepard via lyx-users

On Mon, 20 Dec 2021, Jürgen Spitzmüller via lyx-users wrote:


Try
\usepackage{scrlayer-scrpage}
instead. This package has superseded scrpage2. It should work as a
drop-in replacement.


Jürgen,

Yes, that helps. And it shows how long it's been since I used that template.

Is there a list of superseded packages and their replacement somewhere?

Regards,

Rich
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pdflatex: cannot find scrpage2.sty

2021-12-20 Thread Rich Shepard via lyx-users

Using the KOMA-Script letter template I've used before I cannot compile a
letter using pdflatex. The LaTeX error is: File `scrpage2.sty' not found.

The file is present in /usr/share/texmf/tex/latex/koma-script/scrpage2.sty
and the file's settings include it: \usepackage{scrpage2,url}.

How do I direct LyX to the file's location?

TIA,

Rich
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Re: Glitch (bug?) in 2.3.6.1 [FIXED]

2021-12-15 Thread Rich Shepard via lyx-users

On Wed, 15 Dec 2021, Virgil Arrington Jr. via lyx-users wrote:


And, then there was my even-older brother-in-law, who always ended his
emails with LOL (as in Lots of Love) until my wife asked him what he was
always laughing about.


Virgil,

If he were a reporter/journalist he would have ended his emails with --30--.

:-)

Rich
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Re: Glitch (bug?) in 2.3.6.1 [FIXED]

2021-12-15 Thread Rich Shepard via lyx-users

On Wed, 15 Dec 2021, Virgil Arrington Jr. via lyx-users wrote:

I do the same, but I think that Rich makes a valid point about using the 
keyboard vs. the mouse.


Virgil,

I don't know about others, but I'm a touch-typist (thanks to the Army
decades ago) and I use a laptop-size keyboard with my desktops. That's one
reason I prefer to type. And, while many moons ago I objected to the devs
that I found nothing evil in typing LaTeX code in the document body so
perhaps some other name than Evil Red Text would be appropriate, I learned
to just ignore what ERT abbreiated and use it for my convenience.

And, yes, back in the 1980's I, too, used DOS and WordPerfect regularly.

Regards,

Rich
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Re: Bibliography not in ToC [RESOLVED]

2021-12-14 Thread Rich Shepard via lyx-users

On Tue, 14 Dec 2021, Herbert Voss via lyx-users wrote:


no, switching to biblatex (without natbib) and deleting the option below
was what I changed. Look into the status bar, what the biber runs reports.


Herbert,

That's what I had done, too. Yet, I ran 'Reconfigure' and when I tried to
compile the document lyx pointed me to three errors in my .bib file.
Somehow, the authoryear citation at the beginning of three entries
disappeared. I replaced them, recompiled, and the problem is fixed:
bibliography is present and shown in the ToC.

Why it did not take when I changed the bibliography style I've no idea. But
the reconfigure forced lyx to show me there were errors in the .bib file.

Thanks for the help.

Stay well,

Rich
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Re: Bibliography not in ToC

2021-12-14 Thread Rich Shepard via lyx-users

On Tue, 14 Dec 2021, Herbert Voss via lyx-users wrote:


not in my doc


Herbert,

Regardless, in your version of the .lyx file cite-engine is biblatex while
in mine it's biblatex-natbib, but I changed the bibliography style from the
latter to the former and saved the change.

Do I need to reconfigure LyX to get the change to take effect?

Thanks,

Rich
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Re: Bibliography not in ToC

2021-12-14 Thread Rich Shepard via lyx-users

On Tue, 14 Dec 2021, Herbert Voss via lyx-users wrote:


then the biber run is missing. Try the following: you have a citation (the
last one) which is not in the bib file. Delete it and run the document
again. Does the TOC-entry appears?


Herbert:

I'm not following. There are four citations in the text, each in its own
chapter, and four entries in mwe.bib. The last citation is Shepard2016 and
that's in the .bib file.


What is the control window

The control window is under the text area. You have to enable it
with the menu view->...


Is that what I've known as the status bar?

Regards,

Rich
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Re: I think we need a better name than "MWE"

2021-12-14 Thread Rich Shepard via lyx-users

On Tue, 14 Dec 2021, Steve Litt via lyx-users wrote:


Here on the LyX list we use the word MWE to mean the simplest example that
still exhibits the symptom. But MWE stands for Minimum *Working* Example,
and by definition, the file that exhibits the symptom does not "work".


Steve,

However, the example is the minimal document that works at producing the
error; ergo, MWE.

Rich
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Re: Glitch (bug?) in 2.3.6.1 [FIXED]

2021-12-14 Thread Rich Shepard via lyx-users

On Tue, 14 Dec 2021, Steve Litt via lyx-users wrote:


Maybe because he didn't know about Insert -> Symbols -> Superscripts. I
didn't know it either, but now I do, and will use it. Thanks for the
information!


I frequently use Insert -> Formatting -> Superscripts (or Subscripts, but
just type ctrl-l and insert \textdegree because a) I don't need to move my
hands from the keyboard and use the trackball, and b) I've used it many
times over the past decades.

When there are multiple ways of doing things all work while each of us
prefers one way. Same with OSes, text editors, etc.

Rich
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Re: Bibliography not in ToC

2021-12-14 Thread Rich Shepard via lyx-users

On Tue, 14 Dec 2021, Herbert Voss via lyx-users wrote:


You have a wrong option in the document->settings->bibliography:
Delete the mergedate=compact. However, using the natbib mode
is something from the last millenium ... you should simply use
the authoryear style of biblatex.


Herbert,

Thanks. I don't know where the mergedate=compact came from.
I changed the style from biblatex(natbib mode) to biblatex.

It still does not output the bibliography nor place that entry in the ToC.


If you open the controll window in LyX then you see the errors
of the biber run, too!


What is the control window?


Btw:
- your format was defined as pdf (pdftex), but it should be  pdf (luatex)


In Settings -> Formats I have the output format set to PDF (pdflatex). I've
no idea what luatex does)


- do not use the line
   \usepackage{luainputenc},  it is superflous


There is no such line in the preamble:
\date{}
\usepackage{mathpazo}
\usepackage{gensymb}
\usepackage{graphicx,relsize}
\usepackage{scrlayer-scrpage}
\pagestyle{scrheadings}
\usepackage{xurl}
\refoot{Applied Ecosystem Services, LLC}
\lofoot{Applied Ecosystem Services, LLC}
\automark*{section}

- do not use \usepackage[T1]{fontenc}, it is only for pdflatex and _not_ 
xelatex/lualatex


Ditto above. I have never used xeletax nor luatex.

Regards,

Rich
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Bibliography not in ToC

2021-12-14 Thread Rich Shepard via lyx-users

Running LyX-2.3.6.1 on Slackware64-14.2.

The bibliography settings at the end of the paper indicate the bibliography
should be added to the end of the Table of Contents. It's not. Do I need to
explicitly add that command to the preamble?

I don't recall having this issue before and find no reference to it in my
saved threads of the mail list.

A MWE is attached: .lyx, .pdf, and .bib. I look forward to learning what
I've done incorrectly (or neglected to do at all.)

TIA,

Rich

mwe.tgz
Description: GNU Zip compressed data
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Re: Glitch (bug?) in 2.3.6.1 [FIXED]

2021-12-09 Thread Rich Shepard via lyx-users

On Thu, 9 Dec 2021, Paul A. Rubin via lyx-users wrote:


"For want of a nail the shoe was lost. ..." Here, substitute space for
nail. You need to put a space between the ERT and the letter C. The error
message is because LaTeX thinks you are invoking the nonexistent command
\textdegreeC.


Paul,

Well, shame on me for not seeing that! I've used a space elsewhere in the
document and missed the lack of a space in the figure caption.

Thanks for successfully applying the fresh eyes solution.

Regards,

Rich
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Re: Glitch (bug?) in 2.3.6.1

2021-12-09 Thread Rich Shepard via lyx-users

On Thu, 9 Dec 2021, Paul A. Rubin via lyx-users wrote:


So methinks an MWE is needed.


Paul, et al.:

Attached is a screenshot of the error message box and caption highlighting.

Rich

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Re: Glitch (bug?) in 2.3.6.1 (fwd)

2021-12-09 Thread Rich Shepard via lyx-users

Not sent to list by mistake.

-- Forwarded message --
Date: Thu, 9 Dec 2021 13:21:31 -0800 (PST)
From: Rich Shepard 
To: parubi...@gmail.com
Subject: Re: Glitch (bug?) in 2.3.6.1

On Thu, 9 Dec 2021, Paul A. Rubin via lyx-users wrote:


So methinks an MWE is needed.


Paul, et al.:

See attached. It produces the error message box here.

Rich#LyX 2.3 created this file. For more info see http://www.lyx.org/
\lyxformat 544
\begin_document
\begin_header
\save_transient_properties true
\origin unavailable
\textclass scrreprt
\begin_preamble
\date{}
%\usepackage{newpxtext}
%\usepackage{newpxmath}
\usepackage{mathpazo}
\usepackage{graphicx,relsize}
\usepackage{scrlayer-scrpage}
\pagestyle{scrheadings}
\lehead{Biological Evaluation}
\rohead{Biological Evaluation}
\refoot{Applied Ecosystem Services, LLC}
\lofoot{Applied Ecosystem Services, LLC}
\automark*{section}
%DeclareNolabel{
%  \nolabel{\regexp{[\p{S}\p{Z}\p{C}]+}}
%}
\end_preamble
\options headsepline=on, footsepline=on
\use_default_options true
\maintain_unincluded_children false
\language english
\language_package default
\inputencoding utf8
\fontencoding global
\font_roman "default" "default"
\font_sans "default" "default"
\font_typewriter "default" "default"
\font_math "auto" "auto"
\font_default_family default
\use_non_tex_fonts false
\font_sc false
\font_osf false
\font_sf_scale 100 100
\font_tt_scale 100 100
\use_microtype false
\use_dash_ligatures true
\graphics default
\default_output_format pdf2
\output_sync 0
\bibtex_command biber mergedate=compact
\index_command default
\paperfontsize default
\spacing single
\use_hyperref false
\papersize letterpaper
\use_geometry true
\use_package amsmath 1
\use_package amssymb 1
\use_package cancel 1
\use_package esint 0
\use_package mathdots 0
\use_package mathtools 1
\use_package mhchem 1
\use_package stackrel 1
\use_package stmaryrd 1
\use_package undertilde 1
\cite_engine biblatex-natbib
\cite_engine_type authoryear
\biblatex_bibstyle authoryear
\biblatex_citestyle authoryear
\use_bibtopic false
\use_indices false
\paperorientation portrait
\suppress_date false
\justification true
\use_refstyle 0
\use_minted 0
\index Index
\shortcut idx
\color #008000
\end_index
\leftmargin 2cm
\topmargin 4cm
\bottommargin 2cm
\headsep 1.5cm
\secnumdepth 2
\tocdepth 2
\paragraph_separation skip
\defskip medskip
\is_math_indent 0
\math_numbering_side default
\quotes_style english
\dynamic_quotes 0
\papercolumns 1
\papersides 2
\paperpagestyle plain
\tracking_changes false
\output_changes false
\html_math_output 0
\html_css_as_file 0
\html_be_strict false
\end_header

\begin_body

\begin_layout Standard
MWE
\begin_inset Float figure
wide false
sideways false
status collapsed

\begin_layout Plain Layout
\align center
\begin_inset Graphics
filename 
/home/rshepard/documents/monographs/regulatory-science/npdes-wqbel/images/temperature-all.png
width 75text%
clip

\end_inset


\end_layout

\begin_layout Plain Layout
\begin_inset Caption Standard

\begin_layout Plain Layout
\begin_inset CommandInset label
LatexCommand label
name "fig: temp-boxplot"

\end_inset

Water temperature (in 
\begin_inset ERT
status open

\begin_layout Plain Layout


\backslash
textdegree
\end_layout

\end_inset

C) at each of the four monitoring locations.
 Water temperature greatly affects aquatic biots as well as the rate of
 chemical reactions.
\end_layout

\end_inset


\end_layout

\end_inset


\end_layout

\end_body
\end_document
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Re: Glitch (bug?) in 2.3.6.1

2021-12-09 Thread Rich Shepard via lyx-users

On Thu, 9 Dec 2021, Herbert Voss via lyx-users wrote:


\mu is onyl available in math: start inline mathmode and insert \mu
There is also a \textmu for text mode.


Herbert,

I did change that to inline math.

Thanks,

Rich
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Re: Glitch (bug?) in 2.3.6.1

2021-12-09 Thread Rich Shepard via lyx-users

On Thu, 9 Dec 2021, Rich Shepard via lyx-users wrote:


Closing that error box and repeating the command, ctrl-x/ctrl-h, presents
the message that the pdf files's been created in the status bar.


Er, confusing. I should have written, that the comand presents in the status
bar the message that the file's been created.

Rich
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Glitch (bug?) in 2.3.6.1

2021-12-09 Thread Rich Shepard via lyx-users

I've encountered unusual behavior when compiling the document using
pdflatex. When I've used an ERT within a float figure's caption lyx
highlights the string containing that ERT and pops up an error box which
tells me only that there's an error.

Closing that error box and repeating the command, ctrl-x/ctrl-h, presents
the message that the pdf files's been created in the status bar.

In one figure caption I had '\mu' in an ERT box, in the other caption it is
'\textdegree' in the box.

Since I don't subscribe to the dev's mail list I'm posting this here. It
might be a bug, or the error message box and highlighting might be only a
distracting glitch.

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Re: Wrapping a long URL when in a URL environment [RESOLVED]

2021-12-09 Thread Rich Shepard via lyx-users

On Thu, 9 Dec 2021, Herbert Voss via lyx-users wrote:


\usepackage{xurl}


Herbert,

Thanks for writing that package. In the current document it split the word,
'water,' after the 'a' and without a hyphen. Looks good!

Regards,

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Wrapping a long URL when in a URL environment

2021-12-09 Thread Rich Shepard via lyx-users

In a URL environment the line extends past the right text area margin. Can I
use the regular ERT \- within the URL string to split it, or is there an
environment-specific way to so this?

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Re: Graphic file formats

2021-12-09 Thread Rich Shepard via lyx-users

On Thu, 9 Dec 2021, Murat Yildizoglu wrote:


I understand Rich. I tend to think that when outliers are important,
boxplots are maybe not the best way to represent such a data. For example,
they easily get difficult to interpret because of the compression imposed
by them on the boxes, given the axes’ scales.


Murat,

While specific outlier values can be presented elsewhere when important, the
patterns of variability, including many outliers, communicate well in
boxplots. It all depends on the audience and context.

Stay well,

Rich
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Re: Graphic file formats

2021-12-09 Thread Rich Shepard via lyx-users

On Thu, 9 Dec 2021, Murat Yildizoglu via lyx-users wrote:


In Rich’s specific case, I suspect that the outliers of the boxplots crowd
the plot. ggplot has an option for not plotting them, then you have just
simple boxes left on the plot, and they do not need much memory, a few Ko
only.


Murat,

Addressing environmental regulatory issues outliers are very important.

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Re: Graphic file formats

2021-12-09 Thread Rich Shepard via lyx-users

On Thu, 9 Dec 2021, Herbert Voss via lyx-users wrote:


Here: https://hvoss.org/document2.pdf is a pdf with your image, the first
one as pdf the second one as png:

-rw-r--r--   1 voss  wheel   108688  9 Dez 14:49 all-discharge-plots-1.png
-rw-r--r--@  1 voss  wheel  3704503  9 Dez 14:45 all-discharge-plots.pdf

the ong has only 108kB and was converted with pdftocairo -png ...


Herbert,

That's interesting, and I'll see if the bitmapped graphic fits the same
space as the vector one. I've not known of pdftocairo.

The slow loading (about 14 seconds) in the compiled document is one issue.
The more serious one now is with LyX itself: it now hangs when I click the
'Select' button on the open file dialog box or the 'Browse' button on the
graphic insert dialog box. LyX consumes 100% of the CPU core and all I can
do is kill the process. Started a couple of days ago and had never before
occurred.

Thanks,

Rich

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Re: Graphic file formats

2021-12-09 Thread Rich Shepard via lyx-users

On Thu, 9 Dec 2021, Neal Becker via lyx-users wrote:


I've had some issues similar to this, although none of my timings are as
long as you describe. I often create plots with matplotlib. I believe that
if you draw, say a scatterplot with 10^6 data points, the resulting pdf
will contain 10^6 instructions to draw points. This may cause slow
rendering (and printing!). The most straightforward fix I know of is don't
do that, write code to resample the results to a smaller set. However,
that requires work on my part.


Neal,

The data used to create a plot should be appropriate to communicate what's
important about the data. Recently I calculated monthly averages for river
discharge and plotted those because the data set was very large and monthly
averages were sufficient for that project.

My current project focuses on a different river's discharge variability at
multiple time scales (hourly, daily, monthly, seasonally, and annually) so I
need all 813694 measurements over the 33 year period of record for an
overall data distribution summary.


I've searched a couple of times for a software solution (say, a backend
for mpl that would automatically simplify plots), but so far I haven't
found anything. Similarly, it would be nice to have a solution that
directly simplifies a pdf. I don't think this is the same thing as
compressing a pdf (although I could be wrong).


I've no idea what 'simplifying' a plot would entail. But, since ghostscript
reduced my plot's size by about 74% with no effect on resolution I'm
satisfied with that.

Regards,

Rich
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Re: LyX document corrupted [RESOLVED]

2021-12-08 Thread Rich Shepard

On Wed, 8 Dec 2021, Rich Shepard wrote:


I'll be back to report if the reboot fixed the problem.


JMarc,

I'm back and lyx is once again working as it has for a couple of decades.

Something invisible to me must have clogged the system because trying to
navigate to a directory in a web browser (firefox and chromium) produced the
same lack of response.

Every few years something constipates the computer and it requires a reboot
to clear the clog.

Thanks for your comments,

Rich


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Re: LyX document corrupted

2021-12-08 Thread Rich Shepard

On Wed, 8 Dec 2021, Jean-Marc Lasgouttes wrote:


Can you compile LyX yourself? Actually, I do not remember on what OS you
use LyX.


JMarc,

That's how I install upgrades. I run Slackware64-14.2. Just re-installed lyx
and it's the same behavior.

The application loads immediately, but as soon as I use C-x C-f to open a
document all of one CPU core is used and nothing happens.

While this host has been up almost 130 days there must be something stuck
that's not displayed where I can see it. I'll reboot (which I normally do
only with a kernel upgrade.)

I'll be back to report if the reboot fixed the problem.

Rich
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Re: LyX document corrupted

2021-12-08 Thread Rich Shepard

On Wed, 8 Dec 2021, Rich Shepard wrote:


I assume it's using all 8 cores because top reports lyx using 100% of the
CPU. The processor is a Ryzen7 2700 with 8 cores and 16 threads.


Okay. Pressing 1 when top's running allows me to see the pid and cpu usage
of each core.

This last attempt to load the current document shows lyx using between
99.7-100.0% of core 14 and 3% of all available cores.

What might cause this?

Regards,

Rich
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Re: LyX document corrupted

2021-12-08 Thread Rich Shepard

On Wed, 8 Dec 2021, Jean-Marc Lasgouttes wrote:


This is very weird, because I did not know that LyX could use 8 core...
What are the active processes?


JMarc,

I assume it's using all 8 cores because top reports lyx using 100% of the
CPU. The processor is a Ryzen7 2700 with 8 cores and 16 threads.

Even if lyx uses only 1 core it's no longer opening documents instantly.

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LyX document corrupted

2021-12-08 Thread Rich Shepard

Since replacing the large figure with the smaller one (in the .lyx file) lyx
now hogs 100% of all 8 CPU cores and is taking many minutes to load the
file.

Is there a way for me to find why it's doing this without loosing all of
today's work by restoring yesterday's version from the backup?

Rich
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Re: Graphic file formats

2021-12-08 Thread Rich Shepard

On Wed, 8 Dec 2021, Steve Litt wrote:


There are ways to shrink PDF size:
Web search: linux shrink pdf size


SteveT,

First hit uses ghostscript; I never dove deep into gs and didn't know that
it can effectively compress a PDF file. It compressed the original 3,704,503
byte file to 897,417 bytes; a reduction of 76%. That's impressive.

Thanks for the valuable lesson!

Stay well,

Rich

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Re: Graphic file formatsx

2021-12-08 Thread Rich Shepard

On Wed, 8 Dec 2021, Dr Eberhard Lisse wrote:


What does "slowly" mean?


It means that when the compiled PDF document reaches a page with the large
data image it sits there while the image appears. I've not timed it but it's
much longer than displaying a new page with text or smaller images.


One could try the "draft" option (of graphicx) which should speed
things up until the production runs.


Regardless of a 'draft' image loading more quickly that's not what readers
use.


For my big handbook (which takes 110 seconds to compile (70 on the M1))
I have split this into child documents which compile individually
within 10 to 15 seconds.


How about loading a PDF image that's 3,704,503 bytes in size while reading
your big handbook?

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Re: Graphic file formats

2021-12-08 Thread Rich Shepard

On Wed, 8 Dec 2021, Murat Yildizoglu wrote:


If the plot has many points, the PDF may not be the best choice. I have
even seen cases where the printer cannot process the page with such a plot
I generally choose to export such graphics as a bitmap (PNG) with a high
definition for ensuring a sufficient quality for inclusion in the final
pdf document or to be sent to the editor.


Murat,

That's a thought. I'll give it a test and see how it works.

Thanks,

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Re: Graphic file formats

2021-12-07 Thread Rich Shepard

On Tue, 7 Dec 2021, Steve Litt wrote:


As far as my diagrams created in Inkscape, I put them in the images folder
as .svg, and tell LyX to compile each to PDF. PDF completely saves the
vector information, so that you can resize without significant jaggies.


Steve,

I don't use Inkscape. My images are created by R and GRASS.

Thanks,

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Re: Graphic file formatsx

2021-12-07 Thread Rich Shepard

On Tue, 7 Dec 2021, Ricardo Berlasso wrote:


https://tex.stackexchange.com/questions/1072/which-graphics-formats-can-be-included-in-documents-processed-by-latex-or-pdflat


I infer from this page that a graphic built from a large data set will take
a longer time to load, and if it's vector graphics (which all statistical
plots are) then PDF is the proper format even though LyX says it's
translating the figure to some other format.

Rich
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Re: Graphic file formatsx

2021-12-07 Thread Rich Shepard

On Tue, 7 Dec 2021, Ricardo Berlasso wrote:


Slowly when editing the document or when compiling it? When you insert a
graphic, in the LaTeX options tab it's possible to uncheck the "show in
LyX" option, this will make everything faster (I think)


Ricardo,

When loadin in the compiled PDF.


That depends on the engine you're using: pdflatex, xelatex, lualatex, etc.
See for example here
https://tex.stackexchange.com/questions/1072/which-graphics-formats-can-be-included-in-documents-processed-by-latex-or-pdflat


pdflatex

Thanks,

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Graphic file formatsx

2021-12-07 Thread Rich Shepard

Most of the graphics I import into a LyX document are PDFs. When the data
sets are large they load slowly.

When I create a figure float I see that it's converted to a preferred
format.

Would these figures load more quickly if they were pre-converted? What is
the preferred format?

TIA,

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Re: Itemized lists without indenting

2021-10-23 Thread Rich Shepard

On Sat, 23 Oct 2021, jezZiFeR wrote:


I use LyX 2.3.6.2 on OS 10.14.6 with Koma-script-book and would like to
get rid of indentation in lists, whre each element normally is indented at
left. Is there any possibility to do so?


And I would like to do the opposite: indent paragraphs that are not itemized
or enumerated. Specifically, when quoting laws, statutes, or regulations the
nesting can get deep. For example:

A.
   1.
  a.
  b.
  c.
   2.

etc.

Rather than having them all left-justified I'd like to indent them and
haven't discovered how to do this.

Can we both do what we need to do?

Rich

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Re: Weird compile result -- bug?

2021-10-15 Thread Rich Shepard

On Fri, 15 Oct 2021, Rich Shepard wrote:


Biblatex replaced bibtxt a number of years ago, and the application which

ex, not xt
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Re: Weird compile result -- bug?

2021-10-15 Thread Rich Shepard

On Fri, 15 Oct 2021, Paul A. Rubin wrote:


So I went to the original document and, in the bibliography settings,
changed the processor option from default to bibtex8, and sure enough the
original compiled correctly.

I'm not sure if this is a bug or something the user is responsible for
knowing (it was news to me, but I never use biblatex). So I'm reporting it
here to let wiser minds decide.


Paul,

Thanks for digging further into the issue. I clarify a couple of points
because I think the problem is a bug, not a "feature." :-)

Biblatex replaced bibtxt a number of years ago, and the application which
works on biblatex-formatted bibliographic databases is Biber.

In my document the Settings -> Bibliography -> Bibliography Generator
Processer is set to biber.

 I'm not sure what bibtex8 does, but biblatex and biber are a mated pair.

Carpe weekend,

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Re: LaTeX warning explanation needed [RESOLVED]

2021-10-14 Thread Rich Shepard

On Thu, 14 Oct 2021, Rich Shepard wrote:


No differences in the two files in the copied sections, but the new one is
2K smaller in size.


Nope. that file was mis-saved with a .lys suffix. Whatever that is.

Both the original and copied files have the same size.

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Re: LaTeX warning explanation needed [RESOLVED]

2021-10-14 Thread Rich Shepard

On Wed, 13 Oct 2021, Rich Shepard wrote:


The document now compiles without error using TeXLive2021 (and the 2020
version of texlive-extra), but the bibliography still does not print in the
PDF.


I copied the main doc's .lyx to bit-by-bit.lyx and deleted everything but
the title page and the paragraphs with the citations from this copied file.

Then I copied the old file to the new one section-by-section, saving and
compiling each addition. The bibliography was in the resulting PDF with each
addition.

No differences in the two files in the copied sections, but the new one is
2K smaller in size. So there must be something invisible in the original
file, but I'm not going to spend time looking for it since I now have a
complete copy.

Wow! Not before in the 20+ years I've used LyX have I had this issue.

Thanks to all of you who offered help.

Stay well everyone,

Rich

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Re: LaTeX warning explanation needed

2021-10-14 Thread Rich Shepard

On Thu, 14 Oct 2021, Paul A. Rubin wrote:


Just to be clear, is the attached log from the same MWE that we have (just
references, nothing else) and does the MWE (with input encoding set to
UTF-8) compile for you? The log seems to indicate that it does.


Paul,

The file, latex.log, is for the main document. The file, mwe-latex.log, is
for the MWE.

Yes, the MWE displays the bibliography while the main file still does not.

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Re: LaTeX warning explanation needed

2021-10-14 Thread Rich Shepard

On Thu, 14 Oct 2021, Rich Shepard wrote:


I'll scroll through it, too.


Latest latex.log:
Package biblatex Info: Trying to load language 'english'...
Package biblatex Info: ... file 'english.lbx' found.
(/usr/share/texmf-dist/tex/latex/biblatex/lbx/english.lbx
File: english.lbx 2019/12/01 v3.14 biblatex localization (PK/MW)
)
Package biblatex Info: Input encoding 'utf8' detected.
Package biblatex Info: Automatic encoding selection.
(biblatex) Assuming data encoding 'utf8'.
\openout3 = `biological-evaluation.bcf'.

But,
Package biblatex Info: Trying to load bibliographic data...
Package biblatex Info: ... file 'biological-evaluation.bbl' not found.
No file biological-evaluation.bbl.

The MWE latex.log:
Package biblatex Info: Trying to load biblatex default data model...
Package biblatex Info: ... file 'blx-dm.def' found.
(/usr/share/texmf-dist/tex/latex/biblatex/blx-dm.def
File: blx-dm.def 2019/12/01 v3.14 biblatex localization (PK/MW)
)
Package biblatex Info: Trying to load biblatex style data model...
Package biblatex Info: ... file 'authoryear.dbx' not found.
Package biblatex Info: Trying to load biblatex custom data model...
Package biblatex Info: ... file 'biblatex-dm.cfg' not found.

Other than the page style in the MWE, what else might account for the
differences?

RichThis is pdfTeX, Version 3.141592653-2.6-1.40.22 (TeX Live 2021 on Slint) 
(preloaded format=pdflatex 2021.10.13)  14 OCT 2021 12:58
entering extended mode
 restricted \write18 enabled.
 %&-line parsing enabled.
**mwe.tex
(./mwe.tex
LaTeX2e <2020-10-01> patch level 4
L3 programming layer <2021-02-18>
(/usr/share/texmf-dist/tex/latex/koma-script/scrreprt.cls
Document Class: scrreprt 2021/03/17 v3.33 KOMA-Script document class (report)
(/usr/share/texmf-dist/tex/latex/koma-script/scrkbase.sty
Package: scrkbase 2021/03/17 v3.33 KOMA-Script package (KOMA-Script-dependent b
asics and keyval usage)
(/usr/share/texmf-dist/tex/latex/koma-script/scrbase.sty
Package: scrbase 2021/03/17 v3.33 KOMA-Script package (KOMA-Script-independent 
basics and keyval usage)
(/usr/share/texmf-dist/tex/latex/koma-script/scrlfile.sty
Package: scrlfile 2021/03/17 v3.33 KOMA-Script package (file load hooks)
(/usr/share/texmf-dist/tex/latex/koma-script/scrlfile-hook.sty
Package: scrlfile-hook 2021/03/17 v3.33 KOMA-Script package (using LaTeX hooks)


LaTeX3 Info: Defining command \BeforeFile with sig. 'm' on line 61.


LaTeX3 Info: Defining command \AfterFile with sig. 'm' on line 65.


LaTeX3 Info: Defining command \BeforeClass with sig. 'm' on line 69.


LaTeX3 Info: Defining command \BeforePackage with sig. 'm' on line 73.


LaTeX3 Info: Defining command \AfterAtEndOfClass with sig. 'smo+m' on line 83.


LaTeX3 Info: Defining command \AfterAtEndOfPackage with sig. 'smo+m' on line
(LaTeX3) 93.


LaTeX3 Info: Defining command \scrlfile@AfterClass with sig. 'smo+m' on line
(LaTeX3) 173.


LaTeX3 Info: Defining command \AfterClass with sig. '' on line 174.


LaTeX3 Info: Defining command \scrlfile@AfterPackage with sig. 'smo+m' on line
(LaTeX3) 191.


LaTeX3 Info: Defining command \AfterPackage with sig. '' on line 192.


LaTeX3 Info: Defining command \ReplaceInput with sig. '' on line 193.


LaTeX3 Info: Defining command \ReplaceClass with sig. 'mm' on line 196.


LaTeX3 Info: Defining command \ReplacePackage with sig. 'mm' on line 199.


LaTeX3 Info: Defining command \UnReplaceInput with sig. '' on line 200.


LaTeX3 Info: Defining command \UnReplaceClass with sig. 'm' on line 203.


LaTeX3 Info: Defining command \UnReplacePackage with sig. 'mm' on line 206.


LaTeX3 Info: Defining command \PreventPackageFromLoading with sig. 's+om' on
(LaTeX3) line 234.


LaTeX3 Info: Defining command \StorePreventPackageFromLoading with sig. 'm' on
(LaTeX3) line 242.


LaTeX3 Info: Defining command \ResetPreventPackageFromLoading with sig. '' on
(LaTeX3) line 247.


LaTeX3 Info: Defining command \UnPreventPackageFromLoading with sig. 'sm' on
(LaTeX3) line 261.


LaTeX3 Info: Defining command \BeforeClosingMainAux with sig. 'om' on line
(LaTeX3) 274.


LaTeX3 Info: Defining command \AfterReadingMainAux with sig. 'om' on line 287.


LaTeX3 Info: Defining command \protected@immediate@write with sig. 'm+m+m' on
(LaTeX3) line 298.

(/usr/share/texmf-dist/tex/latex/koma-script/scrlogo.sty
Package: scrlogo 2021/03/17 v3.33 KOMA-Script package (logo)
))) (/usr/share/texmf-dist/tex/latex/graphics/keyval.sty
Package: keyval 2014/10/28 v1.15 key=value parser (DPC)
\KV@toks@=\toks15
)
Skipping: [2021/05/01] Usage of raw option list on input line 252.
Applying: [/00/00] compatibility for LaTeX before 2021/05/01 on input line 
337.
)) (/usr/share/texmf-dist/tex/latex/koma-script/tocbasic.sty
Package: tocbasic 2021/03/17 v3.33 KOMA-Script package (handling toc-files)
\scr@dte@tocline@numberwidth=\skip47
\scr@dte@tocline@numbox=\box47
)
Package tocbasic Info: babel extension for `toc' omitted
(tocbasic) because

Re: LaTeX warning explanation needed

2021-10-14 Thread Rich Shepard

On Thu, 14 Oct 2021, Paul A. Rubin wrote:


Just checked the modified MWE and confirmed that setting UTF-8 as the
input encoding still fixes things.


Paul,

While the MWE might be working, the main document still does not have the
bibliography with the Unicode (utf8) language setting.

If it's not the citations themselves it must be elsewhere. Most current
latex.log attached. I'll scroll through it, too.

RichThis is pdfTeX, Version 3.141592653-2.6-1.40.22 (TeX Live 2021 on Slint) 
(preloaded format=pdflatex 2021.10.13)  14 OCT 2021 12:57
entering extended mode
 restricted \write18 enabled.
 %&-line parsing enabled.
**biological-evaluation.tex
(./biological-evaluation.tex
LaTeX2e <2020-10-01> patch level 4
L3 programming layer <2021-02-18>
(/usr/share/texmf-dist/tex/latex/koma-script/scrreprt.cls
Document Class: scrreprt 2021/03/17 v3.33 KOMA-Script document class (report)
(/usr/share/texmf-dist/tex/latex/koma-script/scrkbase.sty
Package: scrkbase 2021/03/17 v3.33 KOMA-Script package (KOMA-Script-dependent b
asics and keyval usage)
(/usr/share/texmf-dist/tex/latex/koma-script/scrbase.sty
Package: scrbase 2021/03/17 v3.33 KOMA-Script package (KOMA-Script-independent 
basics and keyval usage)
(/usr/share/texmf-dist/tex/latex/koma-script/scrlfile.sty
Package: scrlfile 2021/03/17 v3.33 KOMA-Script package (file load hooks)
(/usr/share/texmf-dist/tex/latex/koma-script/scrlfile-hook.sty
Package: scrlfile-hook 2021/03/17 v3.33 KOMA-Script package (using LaTeX hooks)


LaTeX3 Info: Defining command \BeforeFile with sig. 'm' on line 61.


LaTeX3 Info: Defining command \AfterFile with sig. 'm' on line 65.


LaTeX3 Info: Defining command \BeforeClass with sig. 'm' on line 69.


LaTeX3 Info: Defining command \BeforePackage with sig. 'm' on line 73.


LaTeX3 Info: Defining command \AfterAtEndOfClass with sig. 'smo+m' on line 83.


LaTeX3 Info: Defining command \AfterAtEndOfPackage with sig. 'smo+m' on line
(LaTeX3) 93.


LaTeX3 Info: Defining command \scrlfile@AfterClass with sig. 'smo+m' on line
(LaTeX3) 173.


LaTeX3 Info: Defining command \AfterClass with sig. '' on line 174.


LaTeX3 Info: Defining command \scrlfile@AfterPackage with sig. 'smo+m' on line
(LaTeX3) 191.


LaTeX3 Info: Defining command \AfterPackage with sig. '' on line 192.


LaTeX3 Info: Defining command \ReplaceInput with sig. '' on line 193.


LaTeX3 Info: Defining command \ReplaceClass with sig. 'mm' on line 196.


LaTeX3 Info: Defining command \ReplacePackage with sig. 'mm' on line 199.


LaTeX3 Info: Defining command \UnReplaceInput with sig. '' on line 200.


LaTeX3 Info: Defining command \UnReplaceClass with sig. 'm' on line 203.


LaTeX3 Info: Defining command \UnReplacePackage with sig. 'mm' on line 206.


LaTeX3 Info: Defining command \PreventPackageFromLoading with sig. 's+om' on
(LaTeX3) line 234.


LaTeX3 Info: Defining command \StorePreventPackageFromLoading with sig. 'm' on
(LaTeX3) line 242.


LaTeX3 Info: Defining command \ResetPreventPackageFromLoading with sig. '' on
(LaTeX3) line 247.


LaTeX3 Info: Defining command \UnPreventPackageFromLoading with sig. 'sm' on
(LaTeX3) line 261.


LaTeX3 Info: Defining command \BeforeClosingMainAux with sig. 'om' on line
(LaTeX3) 274.


LaTeX3 Info: Defining command \AfterReadingMainAux with sig. 'om' on line 287.


LaTeX3 Info: Defining command \protected@immediate@write with sig. 'm+m+m' on
(LaTeX3) line 298.

(/usr/share/texmf-dist/tex/latex/koma-script/scrlogo.sty
Package: scrlogo 2021/03/17 v3.33 KOMA-Script package (logo)
))) (/usr/share/texmf-dist/tex/latex/graphics/keyval.sty
Package: keyval 2014/10/28 v1.15 key=value parser (DPC)
\KV@toks@=\toks15
)
Skipping: [2021/05/01] Usage of raw option list on input line 252.
Applying: [/00/00] compatibility for LaTeX before 2021/05/01 on input line 
337.
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Package: tocbasic 2021/03/17 v3.33 KOMA-Script package (handling toc-files)
\scr@dte@tocline@numberwidth=\skip47
\scr@dte@tocline@numbox=\box47
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Package tocbasic Info: babel extension for `toc' omitted
(tocbasic) because of missing \bbl@set@language on input line 137.
Class scrreprt Info: File `scrsize11pt.clo' used instead of
(scrreprt)   file `scrsize11.clo' to setup font sizes on input line 245
1.
(/usr/share/texmf-dist/tex/latex/koma-script/scrsize11pt.clo
File: scrsize11pt.clo 2021/03/17 v3.33 KOMA-Script font size class option (11pt
)
) (/usr/share/texmf-dist/tex/latex/koma-script/typearea.sty
Package: typearea 2021/03/17 v3.33 KOMA-Script package (type area)
\ta@bcor=\skip48
\ta@div=\count179
\ta@hblk=\skip49
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\footheight=\skip52
Package typearea Info: These are the values describing the layout:
(typearea) DIV  = 10
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(typearea) \paperwidth  = 597.50793pt
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(typearea)  DIV departure   = -6%
(typearea)  

Re: LaTeX warning explanation needed

2021-10-14 Thread Rich Shepard

On Thu, 14 Oct 2021, Paul A. Rubin wrote:


OK, after fixing the paragraph setting for the Van Doornik reference, I
got the MWE to compile by doing the following: in Document > Settings... >
Language > Encoding, I switched from Language default to "Other" and
selected "Unicode (utf8)".


Paul,

I wonder how that encoding was changed. The LyX document I last worked on
has the Language default selected; the Other shows a grey-out Unicode
(utf8).

So, the MWE displays the bibliography but the main document still does not
after changing the Language to Unicode (utf8).


I suspect there are some characters in the .bib file that are UTF-8 (which
is my default locale setting) but not "latin9".


$ locale
LANG=en_US.UTF-8
LC_CTYPE="en_US.UTF-8"
LC_NUMERIC="en_US.UTF-8"
LC_TIME="en_US.UTF-8"
LC_COLLATE=C
LC_MONETARY="en_US.UTF-8"
LC_MESSAGES="en_US.UTF-8"
LC_PAPER="en_US.UTF-8"
LC_NAME="en_US.UTF-8"
LC_ADDRESS="en_US.UTF-8"
LC_TELEPHONE="en_US.UTF-8"
LC_MEASUREMENT="en_US.UTF-8"
LC_IDENTIFICATION="en_US.UTF-8"
LC_ALL=

There's no latin9 here, either.


So the log file contained some nonspecific bitching and moaning about
latin9, which led me to discover that the default encoding (at least on my
system) was latin9, and that wasn't cutting it.


Here, the JabRef settings also specify UTF8 (see attached) so I've no idea
where LyX is seeing latin9.

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Re: LaTeX warning explanation needed

2021-10-14 Thread Rich Shepard

On Thu, 14 Oct 2021, Paul A. Rubin wrote:


The runaway string messages suggest that biblatex is choking on something
in your reference file, but as I mentioned just now on the list, without
the .bib file we can't diagnose anything specific. Note that copying from
the .bib file and pasting into an email message may not help, because the
copy/paste sequence has been known to change the encodings of some
strings. I periodically need to copy stuff from an IDE (such as RStudio)
and paste it into an email address, and quotation marks and a few other
characters get mangled in the process. So I copy from RStudio, paste into
a text editor, copy from the text editor, paste into the email message,
and everything magically works.


Paul,

I view/edit the database .bib file in emacs. It's all plain ASCII text.

Regardless, there're no secrets in my scientific references database. I just
uploaded a copy to fileconvoy from where it can be downloaded over the next
5 days:


I'd sure like to get this all fixed once-and-for-all.

Thanks,

Rich
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Re: LaTeX warning explanation needed

2021-10-14 Thread Rich Shepard

On Thu, 14 Oct 2021, Rich Shepard wrote:


Looks like the issue is with Keefer, et al. 2008.


Here's the biblatex entry for that paper:
@Article{Keefer2008,
  author   = {Keefer, M.L. and Boggs, C.T. and Peery, C.A. and Caudill, C.C.},
  journal  = {North American Journal of Fisheries Management},
  title= {Overwintering Distribution, Behavior, and Survival of Adult 
Summer Steelhead: Variability among Columbia River Populations},
  year = {2008},
  pages= {81--96},
  volume   = {28},
  abstract = {Unlike most anadromous salmonids, summer steelhead Oncorhynchus
  mykiss overwinter in rivers rather than the ocean for 6--10
  months prior to spring spawning. Overwintering in rivers may
  make summer steelhead more vulnerable to harvest and other
  mortality sources than are other anadromous populations, but
  there has been little systematic study of this life history
  strategy. Here, we used a large-scale radiotelemetry study
  to examine the overwintering behaviors and distributions of
  26 summer steelhead stocks within the regulated lower
  Columbia-Snake River hydrosystem. Over 6 years, we monitored
  5,939 fish, of which 3,399 successfully reached spawning
  tributaries or the upper Columbia River basin and were
  assigned to specific populations. An estimated 12.\% of fish
  that reached spawning areas overwintered at least partially
  within the hydrosystem (annual estimates = 6.8--19.6\%),
  while the remainder overwintered in tributaries. Across all
  populations, later-arriving fish were more likely to
  overwinter in the hydrosystem; overwintering percentages
  ranged from less than 1\% for fish tagged in June to over
  40\% for those tagged in October. Proportionately more
  interior-basin steelhead (Clearwater, Salmon, and Snake
  River metapopulations) overwintered in the hydrosystem than
  did fish from lower-river populations. Steelhead were
  distributed in mixed-stock assemblages throughout the
  hydrosystem during winter, usually in reservoirs closest to
  their home rivers but also in nonnatal tributaries.
  Overwintering fish moved upstream and downstream between
  reaches in all months; a nadir occurred in early January and
  peak egress into spawning tributaries was in March. The
  estimated survival to tributaries was higher for fish that
  overwintered in the hydrosystem (82\%) than for fish that
  did not (62\%); this difference was largely attributable to
  low winter harvest rates. Our results suggest that large
  main-stem habitats, including reservoirs, may be widely used
  by overwintering summer steelhead. The complex migration
  behaviors of steelhead indicate both the potential for
  adaptation and possible susceptibility to future river
  environment changes.},
  keywords = {fish, salmon, steelhead, trout, rivers, Columbia River, 
distribution, behavior, survival, adults},
}

Are the '%' symbols not correctly escaped?

Rich
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Re: LaTeX warning explanation needed

2021-10-14 Thread Rich Shepard

On Thu, 14 Oct 2021, Paul A. Rubin wrote:


Assuming your .bib file does not contain state secrets, how about the
following? Create a new LyX doc (MWE) in which you just cite everything
that gets cited in the actual document. We don't need headings, images,
text etc., just the citations. Try compiling that. Assuming the same
problems occur, post the LyX MWE and the .bib file and let our resident
biblatex experts (of whom I am decidedly not one) try for themselves.


Paul,

Good idea, I might have thought of this instead of chasing my tail in
circles. See both mwe.lyx and mwe.pdf attached.

Looks like the issue is with Keefer, et al. 2008.

I'll look at that while folks examine the .lyx file.

Thanks,

Rich#LyX 2.3 created this file. For more info see http://www.lyx.org/
\lyxformat 544
\begin_document
\begin_header
\save_transient_properties true
\origin unavailable
\textclass scrreprt
\begin_preamble
\date{}
\end_preamble
\use_default_options false
\maintain_unincluded_children false
\language english
\language_package default
\inputencoding auto
\fontencoding global
\font_roman "palatino" "default"
\font_sans "default" "default"
\font_typewriter "default" "default"
\font_math "auto" "auto"
\font_default_family default
\use_non_tex_fonts false
\font_sc false
\font_osf false
\font_sf_scale 100 100
\font_tt_scale 100 100
\use_microtype false
\use_dash_ligatures true
\graphics default
\default_output_format pdf2
\output_sync 0
\bibtex_command default
\index_command default
\paperfontsize default
\spacing single
\use_hyperref false
\papersize letterpaper
\use_geometry true
\use_package amsmath 1
\use_package amssymb 1
\use_package cancel 1
\use_package esint 0
\use_package mathdots 0
\use_package mathtools 1
\use_package mhchem 1
\use_package stackrel 1
\use_package stmaryrd 1
\use_package undertilde 1
\cite_engine biblatex-natbib
\cite_engine_type authoryear
\biblio_style plain
\biblatex_bibstyle authoryear
\biblatex_citestyle authoryear
\use_bibtopic false
\use_indices false
\paperorientation portrait
\suppress_date false
\justification true
\use_refstyle 0
\use_minted 0
\index Index
\shortcut idx
\color #008000
\end_index
\leftmargin 2cm
\topmargin 4cm
\bottommargin 2cm
\headsep 1.5cm
\secnumdepth 3
\tocdepth 3
\paragraph_separation skip
\defskip medskip
\is_math_indent 0
\math_numbering_side default
\quotes_style english
\dynamic_quotes 0
\papercolumns 1
\papersides 2
\paperpagestyle fancy
\tracking_changes false
\output_changes false
\html_math_output 0
\html_css_as_file 0
\html_be_strict false
\end_header

\begin_body

\begin_layout Standard
MWE
\end_layout

\begin_layout Standard
\begin_inset CommandInset citation
LatexCommand cite
key "Groot1991"
literal "true"

\end_inset


\end_layout

\begin_layout Standard
\begin_inset CommandInset citation
LatexCommand cite
key "Marcoe2018"
literal "true"

\end_inset


\end_layout

\begin_layout Titlehead
\begin_inset CommandInset citation
LatexCommand cite
key "VanDoornik2019"
literal "true"

\end_inset


\end_layout

\begin_layout Standard
\begin_inset CommandInset citation
LatexCommand cite
key "Keefer2008"
literal "true"

\end_inset


\end_layout

\begin_layout Standard
\begin_inset CommandInset citation
LatexCommand cite
key "Johnson2005"
literal "true"

\end_inset


\end_layout

\begin_layout Standard
\begin_inset CommandInset citation
LatexCommand cite
key "McCabe1994"
literal "true"

\end_inset


\end_layout

\begin_layout Standard
\begin_inset CommandInset citation
LatexCommand cite
key "Poole2001"
literal "true"

\end_inset


\end_layout

\begin_layout Standard

\end_layout

\begin_layout Standard
\begin_inset CommandInset bibtex
LatexCommand bibtex
btprint "btPrintCited"
bibfiles "/home/rshepard/documents/jabrefdb"
options "bibtotoc,plain"

\end_inset


\end_layout

\end_body
\end_document


mwe.pdf
Description: Adobe PDF document
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Re: LaTeX warning explanation needed

2021-10-14 Thread Rich Shepard

On Thu, 14 Oct 2021, Herbert Voss wrote:


\texttt{foo
here comes another text with paragraphs and so on



The argument of \texttt is a "runaway argunent" , the closing }
wasn't found.


Herbert,

Thank you.

The jabrefdb has all key:value pairs for the citation at the end of that
paragraph enclosed in curley braces.

The issue now is the Biblatex Generated Bibliography box at the end of the
document highlighted with the input encoding error I provided in my recent
post.

Regards,

Rich
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Re: LaTeX warning explanation needed

2021-10-14 Thread Rich Shepard

On Thu, 14 Oct 2021, Rich Shepard wrote:


But after that I'm getting an error re-running pdflatex. It refers to a
runaway argument in a text paragraph. Since this happened on the second run
which has a bibliographic citation at the end the issue might be with that
entry in the database.


Fixed the bibliography database entry ... I think.

I need to confirm what I'm doing; there's an issue with the bibliography
insert at the end of the document.

1. pdflatex file.tex
2. biber file.bcf
3. pdflatex file.tex

Output:
! Package inputenc Error: Keyboard character used is undefined
(inputenc)in inputencoding `latin9'.

See the inputenc package documentation for explanation.
Type  H   for immediate help.
 ...

l.602 \printbibliography[heading=bibintoc]

?

Why is inputencoding `latin9' when local is en_US.UTF-8?

Where do I find the inputenc package docs?

Exporting the .lyx file to pdflatex produces the same message about running
biber:
Package biblatex Warning: Please (re)run Biber on the file:
(biblatex)biological-evaluation
(biblatex)and rerun LaTeX afterwards.

Exporting to latex (pdflatex) and building from that provides more explicit
error information so I need to learn how to fix it.

Should I provide all Settings -> Bibliography key:value pairs?

Rich
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Re: LaTeX warning explanation needed

2021-10-14 Thread Rich Shepard

On Thu, 14 Oct 2021, Axel Dessecker wrote:


I'm aware what a warning is. This one explicitly tells you what to do: you
have to "run Biber on the file biological-evaluation and rerun LaTeX
afterwards‟. Biber's messages tend to be very helpful in cases where you
don't get the bibliography you want.


Axel,

I exported to LaTeX (pdflatex) and ran pdflatex on the *.tex file. Didn't
know the file to feed to biber.

Now I do, and biber ran to completion without errors.

But after that I'm getting an error re-running pdflatex. It refers to a
runaway argument in a text paragraph. Since this happened on the second run
which has a bibliographic citation at the end the issue might be with that
entry in the database.

I'm looking at that entry after I understand 'runaway argument.'

Thanks,

Rich

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Re: LaTeX warning explanation needed

2021-10-14 Thread Rich Shepard

On Thu, 14 Oct 2021, Axel Dessecker wrote:


LaTeX Warning: There were undefined references.
Package biblatex Warning: Please (re)run Biber on the file:
(biblatex)biological-evaluation
(biblatex)and rerun LaTeX afterwards.


In the PWD are these files:
$ ls
#biological-evaluation.lyx#  biological-evaluation.lyx  
biological-evaluation.tex.dep-pdf
biological-evaluation.auxbiological-evaluation.lyx.bbl  
biological-evaluation.tex.log
biological-evaluation.bcfbiological-evaluation.lyx.blg  
biological-evaluation.toc
biological-evaluation.lofbiological-evaluation.pdf
biological-evaluation.logbiological-evaluation.run.xml

I copied the LaTeX/pdflatex output in the /tmp/lyx_* directory.

Then I ran biber on the *.lyx file:
$ biber biological-evaluation.lyx 
INFO - This is Biber 2.14

INFO - Logfile is 'biological-evaluation.lyx.blg'
ERROR - Cannot find 'biological-evaluation.lyx.bcf'!
INFO - ERRORS: 1

but the file is present in the same directory. And it's 102032 bytes in
size.

Please suggest how I trace the error source.

Rich
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Re: LaTeX warning explanation needed

2021-10-14 Thread Rich Shepard

On Thu, 14 Oct 2021, Axel Dessecker wrote:


starting from line 847 of your log file you find the following information:
LaTeX Warning: There were undefined references.
Package biblatex Warning: Please (re)run Biber on the file:
(biblatex)biological-evaluation
(biblatex)and rerun LaTeX afterwards.


Axel,

Warnings are just that; they don't prevent compiling the document.

The error must be with biblatex, Biber, or the database. I scanned the
latter for non-ASCII characters (it's in utf-8 encoding) and found none.

I'll read the biblatex.pdf again to learn how to run biber on the database;
I guess that's the place to start.

Rich
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Re: LaTeX warning explanation needed

2021-10-13 Thread Rich Shepard

On Wed, 13 Oct 2021, Paul A. Rubin wrote:


The line numbers refer to lines in the .tex file being compiled, not lines
in the .lyx file. The .tex file will be hiding in the temp directory LyX
is using.


Paul,

Well, that makes sense. The .tex file and it's other files seem to have
vanished when I closed lyx. There's nothing in /tmp/.

More investigation tomorrow.

Thanks,

Rich
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LaTeX warning explanation needed

2021-10-13 Thread Rich Shepard

The document now compiles without error using TeXLive2021 (and the 2020
version of texlive-extra), but the bibliography still does not print in the
PDF.

The latex.log has these warnings:
LaTeX Warning: Citation 'Groot1991' on page 4 undefined on input line 151.
LaTeX Warning: Citation 'Marcoe2018' on page 4 undefined on input line 167.

Lines 149-151 in the .lyx file are:
\begin_layout Standard
\begin_inset ERT
status open

and lines 163-167 are:
\begin_inset CommandInset toc
LatexCommand tableofcontents

\end_inset

There are other warnings at the top of the (attached) latex.log file and I
need help understanding what the warnings mean.

TIA,

Rich
This is pdfTeX, Version 3.141592653-2.6-1.40.22 (TeX Live 2021 on Slint) 
(preloaded format=pdflatex 2021.10.13)  13 OCT 2021 15:36
entering extended mode
 restricted \write18 enabled.
 %&-line parsing enabled.
**biological-evaluation.tex
(./biological-evaluation.tex
LaTeX2e <2020-10-01> patch level 4
L3 programming layer <2021-02-18>
(/usr/share/texmf-dist/tex/latex/koma-script/scrreprt.cls
Document Class: scrreprt 2021/03/17 v3.33 KOMA-Script document class (report)
(/usr/share/texmf-dist/tex/latex/koma-script/scrkbase.sty
Package: scrkbase 2021/03/17 v3.33 KOMA-Script package (KOMA-Script-dependent b
asics and keyval usage)
(/usr/share/texmf-dist/tex/latex/koma-script/scrbase.sty
Package: scrbase 2021/03/17 v3.33 KOMA-Script package (KOMA-Script-independent 
basics and keyval usage)
(/usr/share/texmf-dist/tex/latex/koma-script/scrlfile.sty
Package: scrlfile 2021/03/17 v3.33 KOMA-Script package (file load hooks)
(/usr/share/texmf-dist/tex/latex/koma-script/scrlfile-hook.sty
Package: scrlfile-hook 2021/03/17 v3.33 KOMA-Script package (using LaTeX hooks)


LaTeX3 Info: Defining command \BeforeFile with sig. 'm' on line 61.


LaTeX3 Info: Defining command \AfterFile with sig. 'm' on line 65.


LaTeX3 Info: Defining command \BeforeClass with sig. 'm' on line 69.


LaTeX3 Info: Defining command \BeforePackage with sig. 'm' on line 73.


LaTeX3 Info: Defining command \AfterAtEndOfClass with sig. 'smo+m' on line 83.


LaTeX3 Info: Defining command \AfterAtEndOfPackage with sig. 'smo+m' on line
(LaTeX3) 93.


LaTeX3 Info: Defining command \scrlfile@AfterClass with sig. 'smo+m' on line
(LaTeX3) 173.


LaTeX3 Info: Defining command \AfterClass with sig. '' on line 174.


LaTeX3 Info: Defining command \scrlfile@AfterPackage with sig. 'smo+m' on line
(LaTeX3) 191.


LaTeX3 Info: Defining command \AfterPackage with sig. '' on line 192.


LaTeX3 Info: Defining command \ReplaceInput with sig. '' on line 193.


LaTeX3 Info: Defining command \ReplaceClass with sig. 'mm' on line 196.


LaTeX3 Info: Defining command \ReplacePackage with sig. 'mm' on line 199.


LaTeX3 Info: Defining command \UnReplaceInput with sig. '' on line 200.


LaTeX3 Info: Defining command \UnReplaceClass with sig. 'm' on line 203.


LaTeX3 Info: Defining command \UnReplacePackage with sig. 'mm' on line 206.


LaTeX3 Info: Defining command \PreventPackageFromLoading with sig. 's+om' on
(LaTeX3) line 234.


LaTeX3 Info: Defining command \StorePreventPackageFromLoading with sig. 'm' on
(LaTeX3) line 242.


LaTeX3 Info: Defining command \ResetPreventPackageFromLoading with sig. '' on
(LaTeX3) line 247.


LaTeX3 Info: Defining command \UnPreventPackageFromLoading with sig. 'sm' on
(LaTeX3) line 261.


LaTeX3 Info: Defining command \BeforeClosingMainAux with sig. 'om' on line
(LaTeX3) 274.


LaTeX3 Info: Defining command \AfterReadingMainAux with sig. 'om' on line 287.


LaTeX3 Info: Defining command \protected@immediate@write with sig. 'm+m+m' on
(LaTeX3) line 298.

(/usr/share/texmf-dist/tex/latex/koma-script/scrlogo.sty
Package: scrlogo 2021/03/17 v3.33 KOMA-Script package (logo)
))) (/usr/share/texmf-dist/tex/latex/graphics/keyval.sty
Package: keyval 2014/10/28 v1.15 key=value parser (DPC)
\KV@toks@=\toks15
)
Skipping: [2021/05/01] Usage of raw option list on input line 252.
Applying: [/00/00] compatibility for LaTeX before 2021/05/01 on input line 
337.
)) (/usr/share/texmf-dist/tex/latex/koma-script/tocbasic.sty
Package: tocbasic 2021/03/17 v3.33 KOMA-Script package (handling toc-files)
\scr@dte@tocline@numberwidth=\skip47
\scr@dte@tocline@numbox=\box47
)
Package tocbasic Info: babel extension for `toc' omitted
(tocbasic) because of missing \bbl@set@language on input line 137.
Class scrreprt Info: File `scrsize11pt.clo' used instead of
(scrreprt)   file `scrsize11.clo' to setup font sizes on input line 245
1.
(/usr/share/texmf-dist/tex/latex/koma-script/scrsize11pt.clo
File: scrsize11pt.clo 2021/03/17 v3.33 KOMA-Script font size class option (11pt
)
) (/usr/share/texmf-dist/tex/latex/koma-script/typearea.sty
Package: typearea 2021/03/17 v3.33 KOMA-Script package (type area)
\ta@bcor=\skip48
\ta@div=\count179
\ta@hblk=\skip49
\ta@vblk=\skip50
\ta@temp=\skip51
\footheight=\skip52
Package typearea Info: These are the values describing the 

Re: Compile error

2021-10-13 Thread Rich Shepard

On Wed, 13 Oct 2021, Dr Eberhard Lisse wrote:


BibTeX does not like Apostropes "'" in the label names.


el,

With more research on stackexchange I see that you're correct. My apologies.


The issue is with biblatex, too. But, it's supposed to have been fixed:

"This has been addressed in the recent update to biblatex and Biber (version
3.1 and 2.2 respectively).

"With \DeclareNolabel we can now choose exactly those characters to be
dropped from label creation, the default is \p{P}\p{S}\p{C}. In order to
preserve apostrophes you can use

"\DeclareNolabel{
  \nolabel{\regexp{[\p{S}\p{Z}\p{C}]+}}
}"

I don't know how to find the biblatex and Biber versions.

Placing the DeclareNoLabel in Settings -> Bibliography -> Citation Style ->
Options or in the preamble have no effect.

Rich
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Re: compile error not found in document or bibliographic database [RESOLVED]

2021-10-13 Thread Rich Shepard

On Wed, 13 Oct 2021, Rich Shepard wrote:


I think it's related to a biblatex style, but otherwise I've no idea where
that string is located.


Sure enough. I don't know if it was the citation or bibliography style
variant that caused the error. Regardless, setting both styles to authoryear
(after carefully reading the biblatex.pdf) removed that error when the
compiling the document.

However, I still have the issue of no bibliography in the PDF. The
bibliography is located after the last chapter and before the appendix.
(Removing the empty appendix makes no difference.)

Where should I look for the reason the bibliography isn't in the PDF?

Rich
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compile error not found in document or bibliographic database

2021-10-13 Thread Rich Shepard

Compiling the document displays an error message box containing this excerpt
from the latex.log:
\tabbedlabeldatewidth=\skip92
! TeX capacity exceeded, sorry [input stack size=5000].
 \UseTextSymbol
  {TS1}
l.2949 \edef\blxarch@style@niedersachsen{Archä
   ologische Kommission für Nie...
If you really absolutely need more capacity,
you can ask a wizard to enlarge me.

When I search the document for 'Kommission' it's not found. Same with
searching the bibliographic database.

I think it's related to a biblatex style, but otherwise I've no idea where
that string is located.

The latex.log is attached. Really!!

I would like suggestions for finding where this originates.

TIA,

RichThis is pdfTeX, Version 3.14159265-2.6-1.40.21 (TeX Live 2020 on Slackware 
(SlackBuilds.org)) (preloaded format=pdflatex 2021.2.17)  13 OCT 2021 05:56
entering extended mode
 restricted \write18 enabled.
 %&-line parsing enabled.
**biological-evaluation.tex
(./biological-evaluation.tex
LaTeX2e <2020-02-02> patch level 5
L3 programming layer <2020-06-03>
(/usr/share/texmf-dist/tex/latex/koma-script/scrreprt.cls
Document Class: scrreprt 2020/04/19 v3.30 KOMA-Script document class (report)
(/usr/share/texmf-dist/tex/latex/koma-script/scrkbase.sty
Package: scrkbase 2020/04/19 v3.30 KOMA-Script package (KOMA-Script-dependent b
asics and keyval usage)
(/usr/share/texmf-dist/tex/latex/koma-script/scrbase.sty
Package: scrbase 2020/04/19 v3.30 KOMA-Script package (KOMA-Script-independent 
basics and keyval usage)
(/usr/share/texmf-dist/tex/latex/graphics/keyval.sty
Package: keyval 2014/10/28 v1.15 key=value parser (DPC)
\KV@toks@=\toks15
) (/usr/share/texmf-dist/tex/latex/koma-script/scrlfile.sty
Package: scrlfile 2020/04/19 v3.30 KOMA-Script package (loading files)
))) (/usr/share/texmf-dist/tex/latex/koma-script/tocbasic.sty
Package: tocbasic 2020/04/19 v3.30 KOMA-Script package (handling toc-files)
\scr@dte@tocline@numberwidth=\skip47
\scr@dte@tocline@numbox=\box45
)
Package tocbasic Info: babel extension for `toc' omitted
(tocbasic) because of missing \bbl@set@language on input line 137.
Class scrreprt Info: File `scrsize11pt.clo' used instead of
(scrreprt)   file `scrsize11.clo' to setup font sizes on input line 242
4.
(/usr/share/texmf-dist/tex/latex/koma-script/scrsize11pt.clo
File: scrsize11pt.clo 2020/04/19 v3.30 KOMA-Script font size class option (11pt
)
) (/usr/share/texmf-dist/tex/latex/koma-script/typearea.sty
Package: typearea 2020/04/19 v3.30 KOMA-Script package (type area)
\ta@bcor=\skip48
\ta@div=\count167
\ta@hblk=\skip49
\ta@vblk=\skip50
\ta@temp=\skip51
\footheight=\skip52
Package typearea Info: These are the values describing the layout:
(typearea) DIV  = 10
(typearea) BCOR = 0.0pt
(typearea) \paperwidth  = 597.50793pt
(typearea)  \textwidth  = 418.2pt
(typearea)  DIV departure   = -6%
(typearea)  \evensidemargin = 47.2316pt
(typearea)  \oddsidemargin  = -12.5192pt
(typearea) \paperheight = 845.04694pt
(typearea)  \textheight = 514.20023pt
(typearea)  \topmargin  = 12.2347pt
(typearea)  \headheight = 17.0pt
(typearea)  \headsep= 20.40001pt
(typearea)  \topskip= 11.0pt
(typearea)  \footskip   = 47.6pt
(typearea)  \baselineskip   = 13.6pt
(typearea)  on input line 1738.
)
\c@part=\count168
\c@chapter=\count169
\c@section=\count170
\c@subsection=\count171
\c@subsubsection=\count172
\c@paragraph=\count173
\c@subparagraph=\count174
\scr@dte@chapter@maxnumwidth=\skip53
Class scrreprt Info: using compatibility default `afterindent=bysign'
(scrreprt)   for `\chapter on input line 5588.
\scr@dte@section@maxnumwidth=\skip54
Class scrreprt Info: using compatibility default `runin=bysign'
(scrreprt)   for `\section on input line 5598.
Class scrreprt Info: using compatibility default `afterindent=bysign'
(scrreprt)   for `\section on input line 5598.
\scr@dte@part@maxnumwidth=\skip55
Class scrreprt Info: using compatibility default `afterindent=true'
(scrreprt)   for `\part on input line 5607.
\scr@dte@subsection@maxnumwidth=\skip56
Class scrreprt Info: using compatibility default `runin=bysign'
(scrreprt)   for `\subsection on input line 5617.
Class scrreprt Info: using compatibility default `afterindent=bysign'
(scrreprt)   for `\subsection on input line 5617.
\scr@dte@subsubsection@maxnumwidth=\skip57
Class scrreprt Info: using compatibility default `runin=bysign'
(scrreprt)   for `\subsubsection on input line 5627.
Class scrreprt Info: using compatibility default `afterindent=bysign'
(scrreprt)   for `\subsubsection on input line 5627.
\scr@dte@paragraph@maxnumwidth=\skip58
Class scrreprt Info: using compatibility default `runin=bysign'

Re: Compile error [FIXED]

2021-10-13 Thread Rich Shepard

On Wed, 13 Oct 2021, Dr Eberhard Lisse wrote:


the author field is not the same as the label field.


Of course not.


Perhaps it is enclosed by curly braces by default. In which case, the
label field should thus also be, by default).


If you look at a bib(la)tex entry it begins with '@{'

That's followed by the label; that line ends with a comma. The closing curly
brace for the entire entry is at the end. In the meantime, the label field
has no closing curly brace so apostrophes, accents, etc. are not explicitly
displayed. Curly braces around the label field itself solve the problem


But it does make sense not to put Apostrophes into the labels.


Tell Irish authors that. :-)

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Re: Bibliography styles

2021-10-13 Thread Rich Shepard

On Wed, 13 Oct 2021, Dr Eberhard Lisse wrote:


Because it is in the "label" (\cite key?)  field whereas (I assume without
having seen a MWE) the others are elsewhere ("author" field for example).


Yep.

And I sent a MWE with my first post but you thought it too long.

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Re: END-OF-FRAME, once again..

2021-10-13 Thread Rich Shepard

On Wed, 13 Oct 2021, Scott Kostyshak wrote:


I think the workflow you're suggesting makes the not-always-true
assumption that the user does not use the "frame" layout for the *content*
of the frame, and only uses nested layouts (e.g., itemize or standard).
Did I understand right?

What abut making it so that if the user changes the layout to "frame
title", then a *new* frame is started (i.e., LyX realizes "oh this frame
already has a frame title so the user must want a new frame)?


Scott,

I don't recall the exact keystrokes, but if the cursor is at the end of the
last line in a frame and one presses (IIRC), shift-ctrl-enter, then an
end-of-frame and new frame below that magically appears. That does the job,
but takes two hands and a couple of fingers. :-)

Regards,

Rich
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Re: Compile error [FIXED]

2021-10-13 Thread Rich Shepard

On Wed, 13 Oct 2021, Dr Eberhard Lisse wrote:


Which part of 'change the label from "O'Connor" to "OConnor"' do you not
understand? Never mind the Minimal Working Example...

BibTeX does not like Apostropes "'" in the label names.


el,

Actually, neither bibtex nor biblatex object to apostrophes or other accents
and umlauts, etc. It's how they're entered and I had completely forgotten
how to do it properly until this morning and recent caffinization.

The solution is to enclose the string in curly braces: {}.

Doing so for @article{{O'Connor2019}, removed that error (and revealed a
totally different complaint I'll deal with). But, there were no errors
generated with these strings:
author = {Brooks, R.P. and O'Connell, T.J. and Wardrop, D.H. and Jackson, L.E.},
author = {O'Hagan, M.},
and the other seven apostrophes because the entire string in which it occurs
were enclosed in curly braces.

The initial entry name string had an opening curly brace but not a closing
one.

Being bright-eyed and bushy-tailed upon awakening, and having consumed my
first mug of coffee, allowed me to remember this.

Regards,

Rich
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Re: Bibliography styles

2021-10-13 Thread Rich Shepard

On Wed, 13 Oct 2021, Dr Eberhard Lisse wrote:


IT. IS. THE. APOSTROPHE!


1. Then why is it only this one entry and not any of the other 9?

2. Why has this not been an issue before now? Is it biblatex-related and not
seen by bibtex?

3. If you're correct then how does one enter an apostrophy in an author's
name so it's properly written in both citation and bibliography?

You keep pointing out the source of the problem so I assume you have the
solution to it. I'd greatly appreciate learning that solution.

Rich
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Re: END-OF-FRAME, once again..

2021-10-12 Thread Rich Shepard

On Wed, 13 Oct 2021, UD K wrote:


Steve-- I TOTALLY agree with you about the Lyx/Beamer combo being a
killjoy experience.  To make matters worse, I use this combination only
rarely, and in between, pandemics, Former-Presidents and other plagues
brush away what I knew about using it, so the experience is usually like a
root-canal: painful, frustrating and disappointing. It is harder to use
than the much maligned Impress of the even-more-maligned LibreOffice, but
of course the output, if I ever get to that stage, is MUCH better
looking.  Whether that improved look is worth the pain depends on your
pain threshold ;-)


Ehud,

There are other LaTeX presentation tools. But, I do is copy an existing
beamer-class .lyx file to a new presentation's name then modify the new
file. I'll remove frames, enter new titles and contents, and use the same
Settings that worked in the past.

May not be pretty but it works.

Rich
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Biblatex styles

2021-10-12 Thread Rich Shepard

One reason the document has no bibliography is that biber cannot find the
authoryear style presented in the Settings -> Bibliography style list:
Package biblatex Info: Trying to load biblatex default data model...
Package biblatex Info: ... file 'blx-dm.def' found.
(/usr/share/texmf-dist/tex/latex/biblatex/blx-dm.def
File: blx-dm.def 2019/12/01 v3.14 biblatex localization (PK/MW)
)
Package biblatex Info: Trying to load biblatex style data model...
Package biblatex Info: ... file 'authoryear.dbx' not found.
Package biblatex Info: Trying to load biblatex custom data model...
Package biblatex Info: ... file 'biblatex-dm.cfg' not found.

Here, /usr/share/texmf-dist/tex/latex/ has several biblatex subdirectories.
Is there a source where I can learn the diffences among them? I've tried a
couple of authoryear-* selections from Settings -> Bibliography Citation and
Bibliography Styles but none I've tried create a bibliography in the
document.

Help's needed!

Rich
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Re: Compile error

2021-10-12 Thread Rich Shepard

On Tue, 12 Oct 2021, Paul A. Rubin wrote:


I would use a command line tool to scan the document source file (.lyx)
for a non-ASCII or non-UTF8 character. If that turned up nothing, I would
scan the  .bib file (if any) and any included text files.


Paul,

Not the .bib file but the .lyx file with the error.

As I recall, you're on Linux. You might try


Since only 1997.

grep -P '[^\x00-\x7f]'  did the job.

Turns out the '>' were in a URL environment. Changed them to '/' and that
resolved the issue.

Now I still have biber complaining about the O'Conner article in the .bib
file, That's a warning and doesn't prevent the file from compiling ...
maybe ... but there's still no bibiolgraphy in the complied PDF. That needs
fixing.

Thanks,

Rich
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Re: Compile error

2021-10-12 Thread Rich Shepard

On Tue, 12 Oct 2021, Paul A. Rubin wrote:

Make some coffee (regular) and take it intravenously /*immediately*/! There 
is no PNG attached,


Paul,

The document compiled before I added more text to it, then the new encoding
error arose. I was not paying attention when I placed the attachment. See
below.


but rather a LaTeX log (the one you say doesn't exist?) which seems to
show successful compilation other than some missing references.


That was a remnant from before that I hadn't deleted. It's now gone.

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Re: Compile error

2021-10-12 Thread Rich Shepard

On Tue, 12 Oct 2021, Rich Shepard wrote:


The current one is shown in the attached .png. There was no 'complete log'
produced when I clicked that button.


Darn! It's on this one.

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Compile error

2021-10-12 Thread Rich Shepard

Time for a new thread since bibliography styles are no longer an issue. No
bibliography in the compiled doc is, but lyx keeps throwing new compile-time
errors at me.

The current one is shown in the attached .png. There was no 'complete log'
produced when I clicked that button.

The default text encoding on all my hosts is utf8.

There are no close angle brackets '>' in the document (ctrl-s could not find
any) so I've no idea where this error originates.

In the .lyx file fontencoding is 'global' which I assume is the default on
all my lyx docs. Should that be changed to utf8?

RichThis is pdfTeX, Version 3.14159265-2.6-1.40.21 (TeX Live 2020 on Slackware 
(SlackBuilds.org)) (preloaded format=pdflatex 2021.2.17)  12 OCT 2021 06:36
entering extended mode
 restricted \write18 enabled.
 %&-line parsing enabled.
**biological-evaluation.tex
(./biological-evaluation.tex
LaTeX2e <2020-02-02> patch level 5
L3 programming layer <2020-06-03>
(/usr/share/texmf-dist/tex/latex/koma-script/scrreprt.cls
Document Class: scrreprt 2020/04/19 v3.30 KOMA-Script document class (report)
(/usr/share/texmf-dist/tex/latex/koma-script/scrkbase.sty
Package: scrkbase 2020/04/19 v3.30 KOMA-Script package (KOMA-Script-dependent b
asics and keyval usage)
(/usr/share/texmf-dist/tex/latex/koma-script/scrbase.sty
Package: scrbase 2020/04/19 v3.30 KOMA-Script package (KOMA-Script-independent 
basics and keyval usage)
(/usr/share/texmf-dist/tex/latex/graphics/keyval.sty
Package: keyval 2014/10/28 v1.15 key=value parser (DPC)
\KV@toks@=\toks15
) (/usr/share/texmf-dist/tex/latex/koma-script/scrlfile.sty
Package: scrlfile 2020/04/19 v3.30 KOMA-Script package (loading files)
))) (/usr/share/texmf-dist/tex/latex/koma-script/tocbasic.sty
Package: tocbasic 2020/04/19 v3.30 KOMA-Script package (handling toc-files)
\scr@dte@tocline@numberwidth=\skip47
\scr@dte@tocline@numbox=\box45
)
Package tocbasic Info: babel extension for `toc' omitted
(tocbasic) because of missing \bbl@set@language on input line 137.
Class scrreprt Info: File `scrsize11pt.clo' used instead of
(scrreprt)   file `scrsize11.clo' to setup font sizes on input line 242
4.
(/usr/share/texmf-dist/tex/latex/koma-script/scrsize11pt.clo
File: scrsize11pt.clo 2020/04/19 v3.30 KOMA-Script font size class option (11pt
)
) (/usr/share/texmf-dist/tex/latex/koma-script/typearea.sty
Package: typearea 2020/04/19 v3.30 KOMA-Script package (type area)
\ta@bcor=\skip48
\ta@div=\count167
\ta@hblk=\skip49
\ta@vblk=\skip50
\ta@temp=\skip51
\footheight=\skip52
Package typearea Info: These are the values describing the layout:
(typearea) DIV  = 10
(typearea) BCOR = 0.0pt
(typearea) \paperwidth  = 597.50793pt
(typearea)  \textwidth  = 418.2pt
(typearea)  DIV departure   = -6%
(typearea)  \evensidemargin = 47.2316pt
(typearea)  \oddsidemargin  = -12.5192pt
(typearea) \paperheight = 845.04694pt
(typearea)  \textheight = 514.20023pt
(typearea)  \topmargin  = 12.2347pt
(typearea)  \headheight = 17.0pt
(typearea)  \headsep= 20.40001pt
(typearea)  \topskip= 11.0pt
(typearea)  \footskip   = 47.6pt
(typearea)  \baselineskip   = 13.6pt
(typearea)  on input line 1738.
)
\c@part=\count168
\c@chapter=\count169
\c@section=\count170
\c@subsection=\count171
\c@subsubsection=\count172
\c@paragraph=\count173
\c@subparagraph=\count174
\scr@dte@chapter@maxnumwidth=\skip53
Class scrreprt Info: using compatibility default `afterindent=bysign'
(scrreprt)   for `\chapter on input line 5588.
\scr@dte@section@maxnumwidth=\skip54
Class scrreprt Info: using compatibility default `runin=bysign'
(scrreprt)   for `\section on input line 5598.
Class scrreprt Info: using compatibility default `afterindent=bysign'
(scrreprt)   for `\section on input line 5598.
\scr@dte@part@maxnumwidth=\skip55
Class scrreprt Info: using compatibility default `afterindent=true'
(scrreprt)   for `\part on input line 5607.
\scr@dte@subsection@maxnumwidth=\skip56
Class scrreprt Info: using compatibility default `runin=bysign'
(scrreprt)   for `\subsection on input line 5617.
Class scrreprt Info: using compatibility default `afterindent=bysign'
(scrreprt)   for `\subsection on input line 5617.
\scr@dte@subsubsection@maxnumwidth=\skip57
Class scrreprt Info: using compatibility default `runin=bysign'
(scrreprt)   for `\subsubsection on input line 5627.
Class scrreprt Info: using compatibility default `afterindent=bysign'
(scrreprt)   for `\subsubsection on input line 5627.
\scr@dte@paragraph@maxnumwidth=\skip58
Class scrreprt Info: using compatibility default `runin=bysign'
(scrreprt)   for `\paragraph on input line 5637.
Class scrreprt Info: using compatibility default `afterindent=bysign'
(scrreprt)   for `\paragraph on 

Re: JabRef entry warning

2021-10-12 Thread Rich Shepard

On Tue, 12 Oct 2021, Maria Gouskova wrote:


Maybe it was the two "ands" in a row in the author field:


Maria,

Yep, that's the problem. It's like the reading test where the paragraph has
the word 'the' twice, once at the end of a line, the other at the beginning
of the following line.

I hadn't noticed that when I looked at each field, but your fresh eyes
caught it. Thank you very much.

Stay well,

Rich
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Re: JabRef entry warning

2021-10-12 Thread Rich Shepard

On Tue, 12 Oct 2021, Paul A. Rubin wrote:


You have commas at the end of several fields (inside the closing curly
brace), including institution, which I think is triggering the error
message.


Paul,

All key:value pairs end with commas except for the last one.


You also have a few places with a funky dash separating a pair of numbers,
rather than a double dash ('--'). That might be the result of copying from
a PDF and pasting. I don't know if that will also cause any indigestion.


Yes, that's not uncommon. I try to catch and repair them when I enter the
document in JabRef, but aren't always successful. Now corrected.

The error specified the document name, not any key:value pair between the
opening and closing braces:
WARN - Name in key 'Paul2012' is empty (probably consecutive 'and'):
skipping entry 'Paul2012'

The name key has no 'and' in it.

While this is a warning, not an error, I'd still like to have biber accept
it as correct.

Still puzzled,

Rich

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Re: JabRef entry warning

2021-10-12 Thread Rich Shepard

On Tue, 12 Oct 2021, Paul A. Rubin wrote:

You mention 'Paul2012' in the warning but show the entry with key 'Paul2017'. 
Is one of those a typo, or did you show us the wrong entry?


Paul2021,

:-)

Probably need to re-caffinate. Corrected entry just posted.

Thanks,

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Re: JabRef entry warning

2021-10-12 Thread Rich Shepard

On Tue, 12 Oct 2021, Kornel Benko wrote:


Warning from 'Paul2012', but you cite 'Paul2017' here.


Kornel,

Mea culpa! The proper entry is:
@techreport{Paul2012,
abstract = {As part of the National Water-Quality Assessment Program of 
the U.S.
Geological Survey, this study examines the occurrence of nine trace
elements in bed sediment of varying mineralogy and land use and assesses
the possible effects of these trace elements on 
aquatic-macroinvertebrate
community structure. Samples of bed sediment and macroinvertebrates
were collected from 154 streams at sites representative of undeveloped,
...
and Naididae all demonstrated resilience to trace-element exposure
and, in some cases, possible changes in physical habitat within stream
ecosystems. The taxa characteristics within the Ozark Highland ecoregion
were different than other ecoregions as evidenced by generally more
diverse mayfly populations. In addition, Baetis sp. was common and
dominated many of the mayfly populations found in the Rocky Mountain
streams within the Mountain Southern Rockies and Mountain Northern
Rockies ecoregions; however, within the Ozark Highland ecoregion,
Tricorythodes sp. appeared to be more common than Baetis sp.},
author = {Paul, A.P. and Paretti, N.V. and MacCoy, D.E. and and 
Brasher, A.M.D.},
institution = {U.S. Geological Survey Scientific Investigations Report 
2012–5272,},
keywords = {streams, rivers, benthos, macroinvertebrates, sediments, 
land use, trace elements, statistics, metals},
number = {Scientific Investigations Report 2012–5272,},
title = {{The occurrence of trace elements in bed sediment collected 
from areas of varying land use and potential effects on stream 
macroinvertebrates in the conterminous western United States, Alaska, and 
Hawaii, 1992–2000.}},
year = {2012}
}

I redacted most of the abstract to save space as the issue is with the name.

Thanks for pointing out my mistake,

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JabRef entry warning

2021-10-12 Thread Rich Shepard

Biber tells me "WARN - Name in key 'Paul2012' is empty (probably consecutive
'and'): skipping entry 'Paul2012'" and the entry in the jabrefdb.bib is:
@techreport{Paul2017,
abstract = {This paper summarizes the application of algae as 
indicators of nutrient
pollution in water quality management. It describes the use of algal
indicators to develop water quality diagnostics for nutrient pollution
in the United States (U.S.) and then reviews scientific developments
in the use and application of algal indicators across the world.
The paper is intended as a technical resource for the water quality
manager/practitioner seeking to utilize algae to detect the presence
of nutrient pollution and to estimate the risks of nutrient pollution
in adversely affecting the condition of stream ecosystems.},
author = {Paul, M.J.},
institution = {Tetra Tech, Inc./ Center for Ecological Sciences},
keywords = {streams, rivers, lakes, ponds, algae, pollution, water 
quality, indicators},
pagetotal = {44},
title = {{Algal Indicators in Streams: A Review of Their Application in 
Water Quality Management of Nutrient Pollution}},
type = {techreport},
year = {2017}
}

I'm not seeing the empty error in the name. Why does biber find it empty?

Rich

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Re: Bibliography styles

2021-10-12 Thread Rich Shepard

On Tue, 12 Oct 2021, Dr Eberhard Lisse wrote:


you can have whatever BST file is found by LaTeX, or rather whatever BST
file LyX finds when Tools --> Reconfigure... is run.


EL,

Before I escaped from academia and its politics all my published articles'
references were in author-year format. I've used that same format ever
since.

This bibliography issue is new since the pandemic; I've had no need to
prepare reports or other documents with references or bibliographies until
now.

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Re: Bibliography styles

2021-10-12 Thread Rich Shepard

On Tue, 12 Oct 2021, Dr Eberhard Lisse wrote:


Change the label/reference to OConnor2019 :-)-O
BibDesk does not allow me to even enter a "'"


el,

$ grep -c -e "O'" documents/jabrefdb.bib 
10


There are 10 entries begining with "O'" and none has before been an issue.

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Re: Bibliography styles

2021-10-12 Thread Rich Shepard

On Tue, 12 Oct 2021, Herbert Voss wrote:


Biber reads the _complete_ bibliography and exports the list of
citied entries.


Herbert,

Okay. That explains why the non-cited entry was shown but not why that
happened.

Thanks,

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Re: Bibliography styles

2021-10-12 Thread Rich Shepard

On Tue, 12 Oct 2021, Herbert Voss wrote:


Biber reads the _complete_ bibliography and exports the list of
citied entries.


Herbert,

Okay. That explains why the non-cited entry was shown but not why that
happened.

Thanks,

Rich
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Re: Bibliography styles

2021-10-12 Thread Rich Shepard

On Tue, 12 Oct 2021, Herbert Voss wrote:


The problem is _before_ line 28116 and often in the entry before, where a
comma is missing at the end of a data entry.


Herbert,

Scrolling up from that entry for several prior ones all key/value pairs have
commas after each pair, except for the last one.

Regards,

Rich
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Re: Bibliography styles

2021-10-12 Thread Rich Shepard

On Tue, 12 Oct 2021, Rich Shepard wrote:


More importantly, that article is not cited in the document; the only two
citations from JabRef refer to salmon migration.


And I forgot to mention that there's no Bibliography in the PDF.

Also, the changes I made to the bibliography settings took effect after I
closed LyX yesterday and opened it again this morning. The remaining issue
is why there's no Bibliography with the two (current) citations and why
biblatex complains about a JabRef entry not used in this document.

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Re: Bibliography styles

2021-10-12 Thread Rich Shepard

On Mon, 11 Oct 2021, Paul A. Rubin wrote:


I assume you are compiling the doc from LyX. The log will be in the temp
directory where LyX is doing the compiling, and you can view it from LyX
via Document > LaTeX Log.


Paul,

I've not paid attention to that menu item before today.

Now, the error displayed when I try to compile the file is: [3697]
Utils.pm:320> ERROR - BibTeX subsystem:
/tmp/biber_tmp_kxRQ/0_home_rshepard_documents_jabrefdb.bib_12116.utf8, line
28116, syntax error: found "onnor2019", expected ","

When I look at jabref.bib's line 28116 it's three below the start of the
entry:

@article{O'Connor2019,
abstract = {Mercury (Hg) is a potentially harmful trace element in the
  environment and one of the World Health Organization's
  foremost chemicals of concern. The threat posed by Hg

and the error refers to the first line, but I don't understand why. Should
the apostrophe be doubled?

More importantly, that article is not cited in the document; the only two
citations from JabRef refer to salmon migration.

Puzzled,

Rich

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Re: Bibliography styles

2021-10-11 Thread Rich Shepard

On Mon, 11 Oct 2021, Paul A. Rubin wrote:


Any error messages related to the bibliography in the LaTeX log?


Paul,

The only latex.log on this host is usr/share/texmf-var/web2c/latex.log from
March 24, 2015. And there's a /usr/share/texmf-var/web2c/pdflatex.log from
Feb 17, 2021.

Nothing from today.

Rich
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Re: Bibliography styles

2021-10-11 Thread Rich Shepard

On Mon, 11 Oct 2021, Paul A. Rubin wrote:


I'm not sure there has been any replacement. I've used "apalike" in the
past, but I think the package that is specifically designed to match APA
requirements is "apacite". I've got both of them in 2.6.3.1.


Paul,

Could be. Actually, I don't know why that document showed APA as the
bibliography file style since I've been using authordate4 for years.

Regardless, now I've hit a bibliography glitch that's new for me. I use
JabRef for my scientific publications database and it's set to use BibLaTeX.

In Settings -> Bibliography the style format is Biblatex (natbib mode),
variant authoryear; biblatex citation style is authoryear; biblatex
bibliography style is authoryear.

Using Insert -> List/ToC -> Bib(la)tex bibliography I put the bibliography
toward the end of the document (ahead of the Appendix). The bibliography
shows up in the Navigate menu, but not in the complied PDF.

Always, before the current document, when I selected that database in the
grey bibliography link and set the style as authoryear4 the citations
transferred from JabRef to LyX were of the form, AuthorYEAR, and clicking on
that grey box allowed me to select whether it was surrounded by parentheses,
had a comma separating author and year, and other styles. Now I get choices
of only #ID or Key.

I assume that I'm missing something or have made an incorrect choice
somewhere and I'd appreciate someone passing me a cluestick so I can fix
this issue.

Regards,

Rich

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Re: END-OF-FRAME, once again..

2021-10-11 Thread Rich Shepard

On Mon, 11 Oct 2021, UD K wrote:

Thanks for the speedy response, but, alas, neither approach solved my 
problem.  Paul's suggestion ignored the fact that (at least on MY lyx, v. 
2.3.2) there is no Insert > Frame separator Below (as I lamented in my OP).  
I vaguely remember seeing, and even using, that magical Separator, but it has 
now vanished.  Rich's approach merged the moved frame with the one near its 
new home, but-- since there is no obvious (or known to me) way to insert a 
separator, their union is NOT what I was looking for.  I am (almost) back to 
the infamous Square One.


Ehud,

Seems to me that the last time I shuffled frames using the outline window
the frame separator went along with the frame. You might consider upgrading
to 2.3.6.1, the current release, and trying again.

Regards,

Rich
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Bibliography styles

2021-10-11 Thread Rich Shepard

The last document with a bibliography used the APA style. I don't see that
in the list of styles in 2.6.3.1. With what style has it been replaced?

TIA,

Rich
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Re: END-OF-FRAME, once again..

2021-10-11 Thread Rich Shepard

On Mon, 11 Oct 2021, UD K wrote:


  So, finally, here is my question: /How  do I move a frame from one part
of the presentation to another/, and, while you are educating me-- how do
I insert an end-of-frame where I need one?  I could not find "new
environment", and plain layout didn't do it.  I know this is about as
basic a thing as could be, and Lyx/beamer should not have hidden it as
well as they did, but that's what we have.


Ehud,

A second approach:

1. Open outline window to left of beamer class window if not already open.
2. Place cursor on the frame you want to move.
3. Use the up- and down-arrows at the bottom right of the window to move the
fram to where you want it.

HTH,

Rich
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Re: Preamble header issues

2021-10-11 Thread Rich Shepard

On Sat, 9 Oct 2021, Herbert Voss wrote:


headsepline=on should appear as option and not command!
\documentclass[headsepline=on,...]{scrartcl}


Okay.

In the 2021-06-25 version of the KOMA-Script PDF, Section 5.4 describes how
to set up headers and footers using, for example, \lehead{Report Title}. I'm
not seeing how to use \rohead*{scrheadings content} to display the section
number.

Section 5.5 describes the use of automark (and automark*) to place section
numbers in the header. If I have \lehead{Report Title} and \rohead{Report
Title} and add \automark{section} will that place the section number on the
left side of odd-number pages and the right side of even-number pages?

TIA,

Rich
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Re: Preamble header issues

2021-10-10 Thread Rich Shepard

On Sun, 10 Oct 2021, Herbert Voss wrote:


do you have
\pagestyle{scrheadings}
in the documents preamble setting? If yes, then send again an example file


Herbert,

I do now. Still no page numbers.

Now I need to understand the relationship between the LyX Page Layout ->
Page Style selection and adding \pagestyle{} in the preamble. If the former
is set to 'plain' does the preamble define the page style?

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Re: Preamble header issues

2021-10-10 Thread Rich Shepard

On Sun, 10 Oct 2021, Herbert Voss wrote:


mathpazo _is_ Palatino with math support!
from the documentation:
Loading this package changes the default roman font family to Adobe Palatino, 
and the virtual ‘mathpazo’ fonts will be used for math. These virtual fonts 
are made up basically from Palatino Italic, with the missing math symbols 
coming from the CM and Pazo math fonts.


Herbert,

So I've just learned. There are other Palatino/Paladio text/math typefaces
such as newpx and Gyre. I've no idea how any of them might differ in
appearance.

Thanks very much,

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Re: Preamble header issues

2021-10-10 Thread Rich Shepard

On Sun, 10 Oct 2021, Rich Shepard wrote:


I didn't realize that. I like that typeface so I'll look for a replacement.


I've changed the preamble to use newpxtext and newpxmath. BUT, page numbers
are still not present on the PDF pages.

Am I correct in assuming that now I add KOMA-Script report headers and
footers in the preamble to add text and page numbers?

TIA,

Rich

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Re: Preamble header issues

2021-10-10 Thread Rich Shepard

On Sun, 10 Oct 2021, Herbert Voss wrote:


mathpazo is for text _and_ math. palatino is an obsolet package.


Herbert,

I didn't realize that. I like that typeface so I'll look for a replacement.


No idea, I simply installed it for Ubuntu. You can have a look into the
LyX file with a simple editor, then you'll see the preamble setting and
can import it into your example document.


That's what I did in emacs. Mine says lyx-2.3 created the file and the
lyxformat is 544; your's says lyx-2.4 created the file and the lyxformat is
608. Strange.

Thanks,

Rich
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