Upgrade fails: to 2.3.7

2024-03-18 Thread Rich Shepard

Trying to upgrade from 2.3.6.1 to 2.3.7 fails here:
-
make[5]: Entering directory '/tmp/SBo/lyx-2.3.7/src/support'
  CXX  FileMonitor.o
In file included from FileMonitor.cpp:262:0:
moc_FileMonitor.cpp:13:2: error: #error "This file was generated using the moc from 
4.8.7. It"
 #error "This file was generated using the moc from 4.8.7. It"
  ^
moc_FileMonitor.cpp:14:2: error: #error "cannot be used with the include files from 
this version of Qt."
 #error "cannot be used with the include files from this version of Qt."
  ^
moc_FileMonitor.cpp:15:2: error: #error "(The moc has changed too much.)"
 #error "(The moc has changed too much.)"
  ^
moc_FileMonitor.cpp:64:7: error: ‘QMetaObjectExtraData’ does not name a type
 const QMetaObjectExtraData 
lyx::support::FileMonitorGuard::staticMetaObjectExtraData = {
   ^
moc_FileMonitor.cpp:70:53: error: ‘staticMetaObjectExtraData’ was not declared 
in this scope
   qt_meta_data_lyx__support__FileMonitorGuard,  }
 ^
moc_FileMonitor.cpp: In member function ‘virtual const QMetaObject* 
lyx::support::FileMonitorGuard::metaObject() const’:
moc_FileMonitor.cpp:79:71: error: conditional expression between distinct 
pointer types ‘QDynamicMetaObjectData*’ and ‘const QMetaObject*’ lacks a cast
 return QObject::d_ptr->metaObject ? QObject::d_ptr->metaObject : 

   ^
moc_FileMonitor.cpp: At global scope:
moc_FileMonitor.cpp:152:7: error: ‘QMetaObjectExtraData’ does not name a type
 const QMetaObjectExtraData 
lyx::support::FileMonitor::staticMetaObjectExtraData = {
   ^
moc_FileMonitor.cpp:158:48: error: ‘staticMetaObjectExtraData’ was not declared 
in this scope
   qt_meta_data_lyx__support__FileMonitor,  }
^
moc_FileMonitor.cpp: In member function ‘virtual const QMetaObject* 
lyx::support::FileMonitor::metaObject() const’:
moc_FileMonitor.cpp:167:71: error: conditional expression between distinct 
pointer types ‘QDynamicMetaObjectData*’ and ‘const QMetaObject*’ lacks a cast
 return QObject::d_ptr->metaObject ? QObject::d_ptr->metaObject : 

   ^
moc_FileMonitor.cpp: At global scope:
moc_FileMonitor.cpp:239:7: error: ‘QMetaObjectExtraData’ does not name a type
 const QMetaObjectExtraData 
lyx::support::ActiveFileMonitor::staticMetaObjectExtraData = {
   ^
moc_FileMonitor.cpp:245:54: error: ‘staticMetaObjectExtraData’ was not declared 
in this scope
   qt_meta_data_lyx__support__ActiveFileMonitor,  
}
  ^
moc_FileMonitor.cpp: In member function ‘virtual const QMetaObject* 
lyx::support::ActiveFileMonitor::metaObject() const’:
moc_FileMonitor.cpp:254:71: error: conditional expression between distinct 
pointer types ‘QDynamicMetaObjectData*’ and ‘const QMetaObject*’ lacks a cast
 return QObject::d_ptr->metaObject ? QObject::d_ptr->metaObject : 

   ^
Makefile:977: recipe for target 'FileMonitor.o' failed
make[5]: *** [FileMonitor.o] Error 1
make[5]: Leaving directory '/tmp/SBo/lyx-2.3.7/src/support'
Makefile:828: recipe for target 'all' failed
make[4]: *** [all] Error 2
make[4]: Leaving directory '/tmp/SBo/lyx-2.3.7/src/support'
Makefile:2806: recipe for target 'all-recursive' failed
make[3]: *** [all-recursive] Error 1
make[3]: Leaving directory '/tmp/SBo/lyx-2.3.7/src'
Makefile:1900: recipe for target 'all' failed
make[2]: *** [all] Error 2
make[2]: Leaving directory '/tmp/SBo/lyx-2.3.7/src'
Makefile:579: recipe for target 'all-recursive' failed
make[1]: *** [all-recursive] Error 1
make[1]: Leaving directory '/tmp/SBo/lyx-2.3.7'
Makefile:474: recipe for target 'all' failed
make: *** [all] Error 2
-

Installed here are:
qt-4.8.7-x86_64-4
qt-compat32-4.8.7-x86_64-4compat32
qt-creator-4.12.3-x86_64-1_SBo
qt-gstreamer-1.2.0-x86_64-1
qt5-5.12.8-x86_64-1_SBo
qt5-webkit-5.212.0_alpha4-x86_64-3_SBo
qt5ct-1.1-x86_64-1_SBo

What am I missing?

TIA,

Rich
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Re: Upgraded TeXLive; pdflatex throws an error

2024-03-17 Thread Rich Shepard

On Sat, 16 Mar 2024, Paul Rubin wrote:


I'd never heard of ptex before. Uncle Google says it's used to publish in
Japanese. I take it that's what you are trying to do?


Paul,

No, I write in English. For some reason the fresh installation of
TeXLive2024 and attempted update of fmtutil failed. This makes no sense to
me. Last March the fresh installation of TeXLive2023 worked flawlessly.


This is way deeper in the TeX weeds than I've ever burrowed. Maybe someone
familiar with the intersection of LaTeX and Japanese can help.


Or just LaTeX and TeXLive. That's my plan.

Many thanks,

Rich
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Re: Upgraded TeXLive; pdflatex throws an error

2024-03-16 Thread Rich Shepard

On Sat, 16 Mar 2024, Eberhard W Lisse wrote:


I needed to (re-)install footmisc with the tlmgr.


El,

A fresh installation of TeXLive2024 yesterday should have installed all
necessary files.


But Lyx has an option of looking at the logfiles.

And you did not mention what OS you use, on the Mac the latest version
is automatically symlinked.


Slackware linux, since 2003 (and Red Hat for the six prior years.)

Regards,

Rich
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Re: Upgraded TeXLive; pdflatex throws an error

2024-03-16 Thread Rich Shepard

On Sat, 16 Mar 2024, Paul Rubin wrote:


In order to try to compile the doc, LyX has to write a .tex file
someplace, and that someplace has to be the "tempbuf" directory. As long
as you don't close LyX (and barring a rift in the space-time continuum),
that buffer directory and its contents should stay put.


Paul,

The issue since the TeXLive2024 upgrade is lyx finding a pdflatex error.
While updating tlmgr and fmtutils from within /etc/cron.weekly earlier this
morning I ran it again manually just now and it exited with an error code 3:
No pages of output.
Transcript written on ptex.log.
fmtutil [INFO]: log file copied to: 
/usr/local/texlive/2024/texmf-var/web2c/euptex/ptex.log
fmtutil [INFO]: /usr/local/texlive/2024/texmf-var/web2c/euptex/ptex.fmt 
installed.
fmtutil [ERROR]: running `tex -ini   -jobname=lollipop -progname=lollipop 
lollipop.ini This is e-upTeX, Version 3.141592653-p4.1.1-u1.30-230214-2.6 (utf8.euc) (TeX 
Live 2024) (INITEX)  16 MAR 2024 12:27
 restricted \write18 enabled.
 %&-line parsing enabled.
**ptex.ini
(/usr/local/texlive/2024/texmf-dist/tex/ptex/ptex-base/ptex.ini
(/usr/local/texlive/2024/texmf-dist/tex/ptex/ptex-base/ptex.tex
(/usr/local/texlive/2024/texmf-dist/tex/plain/base/plain.tex
Preloading the plain format: codes, registers,
\maxdimen=\dimen10
\hideskip=\skip10
\centering=\skip11
\p@=\dimen11
\z@=\dimen12
\z@skip=\skip12
\voidb@x=\box10
 parameters,
\smallskipamount=\skip13
\medskipamount=\skip14
\bigskipamount=\skip15
\normalbaselineskip=\skip16
\normallineskip=\skip17
\normallineskiplimit=\dimen13
\jot=\dimen14
\interdisplaylinepenalty=\count23
\interfootnotelinepenalty=\count24
 fonts, more fonts,
\itfam=\fam4
\slfam=\fam5
\bffam=\fam6
\ttfam=\fam7

macros,
\strutbox=\box11
\mscount=\count25
\tabs=\box12
\tabsyet=\box13
\tabsdone=\box14
 math definitions,
\rootbox=\box15
\p@renwd=\dimen15
 output routines,
\headline=\toks10
\footline=\toks11
\footins=\insert254
\topins=\insert253
 hyphenation
(/usr/local/texlive/2024/texmf-dist/tex/generic/hyphen/hyphen.tex))
\minfam=\fam8
\gtfam=\fam9
\tminfam=\fam10
\tgtfam=\fam11

(/usr/local/texlive/2024/texmf-dist/tex/ptex/ptex-base/kinsoku.tex)) )
Beginning to dump on file ptex.fmt
 (preloaded format=ptex 2024.3.16)
2428 strings of total length 35532
5060 memory locations dumped; current usage is 132&4907
1020 multiletter control sequences
\font\nullfont=nullfont
\font\tenrm=cmr10
\font\preloaded=cmr9
\font\preloaded=cmr8
\font\sevenrm=cmr7
\font\preloaded=cmr6
\font\fiverm=cmr5
\font\teni=cmmi10
\font\preloaded=cmmi9
\font\preloaded=cmmi8
\font\seveni=cmmi7
\font\preloaded=cmmi6
\font\fivei=cmmi5
\font\tensy=cmsy10
\font\preloaded=cmsy9
\font\preloaded=cmsy8
\font\sevensy=cmsy7
\font\preloaded=cmsy6
\font\fivesy=cmsy5
\font\tenex=cmex10
\font\preloaded=cmss10
\font\preloaded=cmssq8
\font\preloaded=cmssi10
\font\preloaded=cmssqi8
\font\tenbf=cmbx10
\font\preloaded=cmbx9
\font\preloaded=cmbx8
\font\sevenbf=cmbx7
\font\preloaded=cmbx6
\font\fivebf=cmbx5
\font\tentt=cmtt10
\font\preloaded=cmtt9
\font\preloaded=cmtt8
\font\preloaded=cmsltt10
\font\tensl=cmsl10
\font\preloaded=cmsl9
\font\preloaded=cmsl8
\font\tenit=cmti10
\font\preloaded=cmti9
\font\preloaded=cmti8
\font\preloaded=cmti7
\font\preloaded=cmu10
\font\preloaded=cmmib10
\font\preloaded=cmbsy10
\font\preloaded=cmcsc10
\font\preloaded=cmssbx10
\font\preloaded=cmdunh10
\font\preloaded=cmr7 at 14.51799pt
\font\preloaded=cmtt10 at 14.4pt
\font\preloaded=cmssbx10 at 14.4pt
\font\preloaded=manfnt
\font\tenmin=min10
\font\preloaded=min9
\font\preloaded=min8
\font\sevenmin=min7
\font\preloaded=min6
\font\fivemin=min5
\font\tengt=goth10
\font\preloaded=goth9
\font\preloaded=goth8
\font\sevengt=goth7
\font\preloaded=goth6
\font\fivegt=goth5
\font\tentmin=tmin10
\font\preloaded=tmin9
\font\preloaded=tmin8
\font\seventmin=tmin7
\font\preloaded=tmin6
\font\fivetmin=tmin5
\font\tentgt=tgoth10
\font\preloaded=tgoth9
\font\preloaded=tgoth8
\font\seventgt=tgoth7
\font\preloaded=tgoth6
\font\fivetgt=tgoth5
20343 words of font info for 74 preloaded fonts
14 hyphenation exceptions
Hyphenation trie of length 6075 has 181 ops out of 35111
  181 for language 0
No pages of output.
# actual command line used during this run
# euptex -ini   -jobname=ptex -progname=ptex -kanji-internal=euc ptex.ini 
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Re: Upgraded TeXLive; pdflatex throws an error

2024-03-16 Thread Rich Shepard

On Sat, 16 Mar 2024, Paul Rubin wrote:


I trust you are leaving LyX open while you look for the temp directory. If
you go to Tools > Preferences... > Paths, what do you have filled in for
"Temporary directory:"?


Paul,

/tmp, and that's where I've found LyX_tempbuf* before.

Thanks,

Rich
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Re: Upgraded TeXLive; pdflatex throws an error

2024-03-16 Thread Rich Shepard

On Sat, 16 Mar 2024, Rich Shepard wrote:


The first place I looked was /tmp/lyx_* but both subdirectories were
empty.


Just invoked Lyx-2.3.6.1 and tried compiling mwe.lyx using pdflatex. Same
message box displayed; image attached.

There is no lyx directory in /tmp.

All new issues for me. Suggestions needed.

TIA,

Rich
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Re: Upgraded TeXLive; pdflatex throws an error

2024-03-16 Thread Rich Shepard

On Fri, 15 Mar 2024, Paul Rubin wrote:

The log file will be in the temp directory created by LyX for the document. 
Most likely you'll start spelunking in /tmp, but if you set up the temp 
directory to be somewhere else you can find out where in Tools > Preferences 
Paths > Temporary directory. The full path to the log file will be 
something like /tmp/lyx_tmpdir./lyx_tmpbuf/mwe.log.


Paul,

The first place I looked was /tmp/lyx_* but both subdirectories were empty.

Thanks,

Rich
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Upgraded TeXLive; pdflatex throws an error

2024-03-15 Thread Rich Shepard

I upgraded TeXLive from 2023 to 2024 and tried compiling the MWE for the
math issues still unresolve. A message box displayed:
The external program
pdflatex 
finished with an error. It is recommended you fix the cause of the external

program's error (check the logs).

1. Where do I find the appropriate log file? It's not in /tmp/ or /var/log/.

2. If LyX is looking for TeXLive2023 where do I tell it to look for
TeXLive224?

TIA,

Rich

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Re: ERT: entering down arrow [RESOLVED]

2024-03-15 Thread Rich Shepard

On Fri, 15 Mar 2024, Ricardo Berlasso wrote:


The \downarrow command do not have a dedicated keyboard shortcut (you can
create your own under Tools → Preferences). You can insert this command
either by using the "arrows" menu or simply by typing \downarrow and then
pressing TAB or Space. If you do it at least once, then LyX's math editor
will suggest the instruction when writing the first characters of its
name.


Ricardo,

Aha! I remember reading about arrows in the math manual but didn't recognize
its use in the fractions example.

Thanks very much,

Rich
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Re: Inline math: one ERT compiles, the other doesn't

2024-03-15 Thread Rich Shepard

On Fri, 15 Mar 2024, Rich Shepard wrote:


Apparently so. Careful re-entering the ERT allowed the doc to compile.


I was wrong. I cannot get an simple equation to compile via the menus or
ERT.

I copied the real doc.lyx to mwe.lyx and deleted everything above and below
the paragraph with the equation. That non-printable character shows up even
with a minimal entry in the ERT, regardless of whether the backslash is
entered.

I'm totally lost and need advice on what might cause this issue.

mwe.lyx attached.

Rich#LyX 2.3 created this file. For more info see http://www.lyx.org/
\lyxformat 544
\begin_document
\begin_header
\save_transient_properties true
\origin unavailable
\textclass scrreprt
\begin_preamble
\date{}
\renewcommand\bibname{References}
\usepackage{mathpazo,amssymb}
\usepackage{graphicx,relsize}
\usepackage{scrlayer-scrpage}
\usepackage{xcolor,colortbl}
\usepackage{chngcntr}
\usepackage{xurl}
\counterwithout{figure}{section}
\definecolor{lightgray}{gray}{0.8}
\pagestyle{scrheadings}
\lehead{CERCLA Data Analysis}
\rohead{CERCLA Data Analysis}
\refoot{Applied Ecosystem Services, LLC}
\lofoot{Applied Ecosystem Services, LLC}
\end_preamble
\use_default_options true
\maintain_unincluded_children false
\language english
\language_package default
\inputencoding utf8
\fontencoding global
\font_roman "palatino" "default"
\font_sans "cmss" "default"
\font_typewriter "cmtt" "default"
\font_math "auto" "auto"
\font_default_family default
\use_non_tex_fonts false
\font_sc false
\font_osf false
\font_sf_scale 100 100
\font_tt_scale 100 100
\use_microtype false
\use_dash_ligatures false
\graphics default
\default_output_format pdf2
\output_sync 0
\bibtex_command biber
\index_command default
\paperfontsize 11
\spacing single
\use_hyperref false
\papersize executivepaper
\use_geometry true
\use_package amsmath 1
\use_package amssymb 1
\use_package cancel 1
\use_package esint 0
\use_package mathdots 1
\use_package mathtools 1
\use_package mhchem 1
\use_package stackrel 1
\use_package stmaryrd 1
\use_package undertilde 1
\cite_engine biblatex-natbib
\cite_engine_type authoryear
\biblio_style plain
\biblatex_bibstyle authoryear
\biblatex_citestyle authoryear
\use_bibtopic false
\use_indices false
\paperorientation portrait
\suppress_date true
\justification true
\use_refstyle 0
\use_minted 0
\index Index
\shortcut idx
\color #008000
\end_index
\paperwidth 6.5in
\paperheight 9.5in
\leftmargin 0.75in
\topmargin 0.5in
\rightmargin 0.5in
\bottommargin 1in
\secnumdepth 5
\tocdepth 5
\paragraph_separation indent
\paragraph_indentation default
\is_math_indent 0
\math_numbering_side default
\quotes_style english
\dynamic_quotes 0
\papercolumns 1
\papersides 2
\paperpagestyle plain
\tracking_changes false
\output_changes false
\html_math_output 0
\html_css_as_file 0
\html_be_strict false
\end_header

\begin_body

\begin_layout Standard
The arithmetic mean (or simply mean or average) of a list of numbers, is
 the sum of all of the numbers divided by the number of numbers.
 Similarly, the mean of a sample, 
\begin_inset ERT
status open

\begin_layout Plain Layout

$
\backslash
x_1,$
\end_layout

\end_inset

, usually denoted by 
\begin_inset Formula $\bar{x}$
\end_inset

, is the sum of the sampled values divided by the number of items in the
 sample.
\end_layout

\end_body
\end_document
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ERT: entering down arrow

2024-03-15 Thread Rich Shepard

In the Math manual, subsection fractions, the table of commands and results
shows down arrows on a yellow background. How do I enter the down arrow;
ctrl-down arrow does nothing.

Rich

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Re: Inline math: one ERT compiles, the other doesn't (fwd)

2024-03-15 Thread Rich Shepard

On Fri, 15 Mar 2024, Rich Shepard wrote:


I'll see with the display version if it's my fingers mis-typing a
backslash that creates the unprintable character.


Apparently so. Careful re-entering the ERT allowed the doc to compile.

Thanks again,

Rich
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Re: Inline math: one ERT compiles, the other doesn't (fwd)

2024-03-15 Thread Rich Shepard

On Fri, 15 Mar 2024, Paul Rubin wrote:

There's nothing inherent in the content causing this. I opened your mwe.lyx 
file in LyX and, after confirming the error, deleted the second ERT box and 
trailing comma, confirmed what was left compiled without error, then typed 
the ERT box and content (and trailing comma) back in. The document compiled 
without problem.


Paul,

Thanks for confirming.

So the question is, how did you create the second part of the example file? 
Most likely something you did inadvertently inserted the problem character.


In the actual document I had originally entered the inline equation using
Insert -> Math -> Inline. This morning I deleted that yellow box and used
ERT to enter the string. Error committed.

Now, in the actual document I had to re-enter the ERT several times to get
it to compile. It may be that when entering the ERT content I tended to type
], backspace to delete, then type \. Perhaps correcting the typo was the
cause.

I'll see with the display version if it's my fingers mis-typing a backslash
that creates the unprintable character.

Carpe weekend,

Rich

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Re: Inline math: one ERT compiles, the other doesn't (fwd)

2024-03-15 Thread Rich Shepard

On Fri, 15 Mar 2024, Rich Shepard wrote:


What's the difference causing this discrepancy? How do I write the second
line so it builds without complaint?


Looking at the mwe.lyx file in emacs I see that control character on line
137. It's not at line 118 which is the same position for the first line.

Why?

Rich
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Inline math: one ERT compiles, the other doesn't (fwd)

2024-03-15 Thread Rich Shepard

I've read the math section in the User Guide and am working my way through
the separate math manual.

Attached is a MWE. The first line (if the only one in the document) compiles
using pdflatex. The second line causes a build error because a code point
(0xfffc) is detected. The font encoding is unicode utf8.

What's the difference causing this discrepancy? How do I write the second
line so it builds without complaint?

TIA,

Rich#LyX 2.3 created this file. For more info see http://www.lyx.org/
\lyxformat 544
\begin_document
\begin_header
\save_transient_properties true
\origin unavailable
\textclass scrreprt
\begin_preamble
\date{}
%\usepackage{ftnxtra}
\usepackage{mathpazo,amssymb}
\usepackage{graphicx,relsize}
\usepackage{scrlayer-scrpage}
\usepackage{xcolor,colortbl}
\usepackage{chngcntr,xurl}
\counterwithout{figure}{section}
\definecolor{lightgray}{gray}{0.8}
\pagestyle{scrheadings}
\lehead{Biological Evaluation}
\rohead{Biological Evaluation}
\refoot{Applied Ecosystem Services, LLC}
\lofoot{Applied Ecosystem Services, LLC}
%\automark*{sections}
\end_preamble
\use_default_options true
\maintain_unincluded_children false
\language english
\language_package default
\inputencoding auto
\fontencoding global
\font_roman "palatino" "default"
\font_sans "avant" "default"
\font_typewriter "libertine-mono" "default"
\font_math "auto" "auto"
\font_default_family default
\use_non_tex_fonts false
\font_sc false
\font_osf false
\font_sf_scale 100 100
\font_tt_scale 100 100
\use_microtype false
\use_dash_ligatures true
\graphics default
\default_output_format default
\output_sync 0
\bibtex_command biber
\index_command default
\paperfontsize 11
\spacing single
\use_hyperref false
\papersize letterpaper
\use_geometry true
\use_package amsmath 1
\use_package amssymb 1
\use_package cancel 1
\use_package esint 0
\use_package mathdots 0
\use_package mathtools 1
\use_package mhchem 1
\use_package stackrel 1
\use_package stmaryrd 1
\use_package undertilde 1
\cite_engine biblatex-natbib
\cite_engine_type authoryear
\biblatex_bibstyle authoryear
\biblatex_citestyle authoryear
\use_bibtopic false
\use_indices false
\paperorientation portrait
\suppress_date false
\justification true
\use_refstyle 0
\use_minted 0
\index Index
\shortcut idx
\color #008000
\end_index
\leftmargin 0.75in
\topmargin 0.5in
\rightmargin 0.5in
\bottommargin 0.5in
\secnumdepth 2
\tocdepth 2
\paragraph_separation indent
\paragraph_indentation default
\is_math_indent 0
\math_numbering_side default
\quotes_style english
\dynamic_quotes 0
\papercolumns 1
\papersides 1
\paperpagestyle plain
\tracking_changes false
\output_changes false
\html_math_output 0
\html_css_as_file 0
\html_be_strict false
\end_header

\begin_body

\begin_layout Standard
For example, 
\begin_inset ERT
status open

\begin_layout Plain Layout

$
\backslash
bar x = x_1, x_2, 
\backslash
dots, x_n$
\end_layout

\end_inset


\end_layout

\begin_layout Standard
Similarly, the mean of a sample 
\begin_inset ERT
status open

\begin_layout Plain Layout

$
\backslash
bar x = x_1, x_2, 
\backslash
dots, x_n$
\end_layout

\end_inset

,
\end_layout

\end_body
\end_document
#LyX 2.3 created this file. For more info see http://www.lyx.org/
\lyxformat 544
\begin_document
\begin_header
\save_transient_properties true
\origin unavailable
\textclass scrreprt
\begin_preamble
\date{}
%\usepackage{ftnxtra}
\usepackage{mathpazo,amssymb}
\usepackage{graphicx,relsize}
\usepackage{scrlayer-scrpage}
\usepackage{xcolor,colortbl}
\usepackage{chngcntr,xurl}
\counterwithout{figure}{section}
\definecolor{lightgray}{gray}{0.8}
\pagestyle{scrheadings}
\lehead{Biological Evaluation}
\rohead{Biological Evaluation}
\refoot{Applied Ecosystem Services, LLC}
\lofoot{Applied Ecosystem Services, LLC}
%\automark*{sections}
\end_preamble
\use_default_options true
\maintain_unincluded_children false
\language english
\language_package default
\inputencoding utf8
\fontencoding global
\font_roman "palatino" "default"
\font_sans "avant" "default"
\font_typewriter "libertine-mono" "default"
\font_math "auto" "auto"
\font_default_family default
\use_non_tex_fonts false
\font_sc false
\font_osf false
\font_sf_scale 100 100
\font_tt_scale 100 100
\use_microtype false
\use_dash_ligatures true
\graphics default
\default_output_format default
\output_sync 0
\bibtex_command biber
\index_command default
\paperfontsize 11
\spacing single
\use_hyperref false
\papersize letterpaper
\use_geometry true
\use_package amsmath 1
\use_package amssymb 1
\use_package cancel 1
\use_package esint 0
\use_package mathdots 0
\use_package mathtools 1
\use_package mhchem 1
\use_package stackrel 1
\use_package stmaryrd 1
\use_package undertilde 1
\cite_engine biblatex-natbib
\cite_engine_type authoryear
\biblatex_bibstyle authoryear
\biblatex_citestyle authoryear
\use_bibtopic false
\use_indices false
\paperorientation portrait
\suppress_date false
\justification true
\use_refstyle 0
\use_minted 0
\index Index
\shortcut idx
\color #008000
\end_index

Re: Entering a string of variables [UPDATED]

2024-03-14 Thread Rich Shepard

On Thu, 14 Mar 2024, Rich Shepard wrote:


How should I enter such strings to not get this error?


I'm reading the math manual and will re-enter this string using command mode
(the former ERT, yes?).

Not since 2005 have I entered complex equations. What size brackets should I
specify for the attached equation? Any and all suggestions on writing that
equation are welcome. :-)

TIA,

Rich


arithmetic-mean.pdf
Description: Adobe PDF document
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Entering a string of variables

2024-03-14 Thread Rich Shepard

In a document I entered a string of variables using inline math mode:
  x_1, x_2, ..., x_n (the numbers are subscripts)
When compiled with pdflatex an error is displayed that there's a unicode
non-printable character (U+FFFC) at the end of the string.

How should I enter such strings to not get this error?

TIA,

Rich
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Re: Source of another error [FIXED]

2024-03-14 Thread Rich Shepard

On Thu, 14 Mar 2024, Rich Shepard wrote:


Looking at the small window of View -> Code Preview Pane -> Complete
Source and scrolling I didn't see any control character. Looking at the
.lyx file in emacs and searching for the string highlighted by the error
message also did not present a visible control character.


My morning mug of coffee finally kicked in. Control characters, by
definition, are not printable; ergo, they cannot be seen.

I erased the string "distributions. There" where the control character was
found just before the period, and retyped the string. Now the document
compiles without error.

Should have thought of this yesterday.

Thanks, Jürgen.

Regards,

Rich
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Re: Source of another error

2024-03-14 Thread Rich Shepard

On Thu, 14 Mar 2024, Jürgen Spitzmüller wrote:


When you open View > Source, you might locate where this control character
is, and remove it.


Jürgen,

Looking at the small window of View -> Code Preview Pane -> Complete Source
and scrolling I didn't see any control character. Looking at the .lyx file
in emacs and searching for the string highlighted by the error message also
did not present a visible control character.

Thanks,

Rich
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Source of another error

2024-03-13 Thread Rich Shepard

Looking at the LyX doc and the resulting .pdf I don't see the error:
-
chapter 2.

! LaTeX Error: Unicode character ^^Q (U+0011)
   not set up for use with LaTeX.

See the LaTeX manual or LaTeX Companion for explanation.
Type  H   for immediate help.
 ...

l.222 ...els based on probability distributions^^Q
  . There
-
Here's the text from the .lyx file:

Because all environmental (and ecological) studies work with comparatively
small samples from populations of almost infinite numbers of possible
samples we need models based on probability distributions. There are many
probability distributions that describe the the frequency of values across
their range.

A web search shows that unicode U+0011 is 'device control one.' What device
is it trying to control in the above paragraph?

TIA,

Rich
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Re: Finding and removing old font commands [RESOLVED]

2024-03-13 Thread Rich Shepard

On Wed, 13 Mar 2024, Jürgen Spitzmüller wrote:


Probably in the bibtex style file (*.bst). Look in the bibtex inset to see
what style you are using.


Jürgen,

Thank you, that was the problem. When I updated the settings to current
scrreport settings I missed the citation style format. It remained at bibtex
natbib rather than biblatex natbib.

Many thanks,

Rich
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Finding and removing old font commands

2024-03-13 Thread Rich Shepard

Updating documents from several years ago (the current one was originally
written in 2018) pdflatex tells me I have old font commands such as \sc and
\bf in the bibliography. I don't find them when looking in jabrefbib.bib;
for example a 1982 book and a 1940 article.

I need a clue stick on where to look for these errors; an example from the
LyX error log is:
l.4 {\sc
 Aitchison, J.} 1982.
You should note that since 1994 LaTeX2e provides a new font selection scheme
called NFSS2 with several new, combinable font commands. KOMA-Script
classes had defined the old font commands like `\sc' only for compatibility
with old LaTeX 2.09 document styles of Script 2.0. Nevertheless, these
commands are deprecated and undocumented at least since 2003. Since 2013
KOMA-Script classes warned about soon removement of these deprecated commands.
Now, after two decades of LaTeX2e and NFSS2, these commands will not work any
more. If loading a package results in this error message, you should contact
the author of that package and ask him to replace the deprecated font command
`\sc', e.g., by `\normalfont \scshape `. Otherwise you should reconfigure
or replace the package. If you have used the old font command `\sc' yourself,
you should replace it, e.g., by `\normalfont \scshape '.
To make it work for now, you can use the already also deprecated class option
`enabledeprecatedfontcommands'.

The JabRef bibtex source for this article does not contain {\sc.

Help's needed.

TIA,

Rich

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Re: I FUBAR'd preamble: no page numbers or footer text [FIXED]

2024-03-08 Thread Rich Shepard

On Fri, 8 Mar 2024, Kornel Benko wrote:


Give it more space at the bottom. Selecting 1in (instead of 0.5in) cures it 
here.


Kornel,

How interesting. It works here, too. Without the separating lines, but
that's okay.

Thanks very much,

Rich
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Re: I FUBAR'd preamble: no page numbers or footer text

2024-03-07 Thread Rich Shepard

On Thu, 7 Mar 2024, Rich Shepard wrote:


Now, I'm getting build errors (after hitting a LyX bug that was not
explained, but crashed the application.)


Build errors eliminated by re-installing TeXLive2023 from its last update in
October 2023. But, still have the header/footer issue.

Attached is lee-mwe.lyx. It has paper format USletter, page layout style
plain, two-sided printing, and language encoding unicode (UTF8) which
removed the error messages while producing pdflatex output because, for some
reason, latin9 language encoding seems to be hard-wired into all documents.

As a KOMA-Script report using \pagestyle[scrheadings] with the header and
footer text specified only the header text (and no separating horizontal
line) is in the output. All this used to put the header and footer text, and
the page number in the footer center, with separating lines.

Where do I look for the reason it stopped working?

Rich#LyX 2.3 created this file. For more info see http://www.lyx.org/
\lyxformat 544
\begin_document
\begin_header
\save_transient_properties true
\origin unavailable
\textclass scrreprt
\begin_preamble
\date{}
\usepackage{lipsum}
\usepackage{mathpazo,amssymb}
\usepackage{graphicx,relsize}
\usepackage{scrlayer-scrpage}
\usepackage{xcolor,colortbl}
\usepackage{chngcntr,xurl}
\counterwithout{figure}{section}
\definecolor{lightgray}{gray}{0.8}
\pagestyle{scrheadings}
\lehead{Biological Evaluation}
\rohead{Biological Evaluation}
\refoot{Applied Ecosystem Services, LLC}
\lofoot{Applied Ecosystem Services, LLC}
%\automark*{sections}
\end_preamble
\use_default_options false
\maintain_unincluded_children false
\language english
\language_package default
\inputencoding utf8
\fontencoding global
\font_roman "palatino" "default"
\font_sans "avant" "default"
\font_typewriter "libertine-mono" "default"
\font_math "auto" "auto"
\font_default_family default
\use_non_tex_fonts false
\font_sc false
\font_osf false
\font_sf_scale 100 100
\font_tt_scale 100 100
\use_microtype false
\use_dash_ligatures true
\graphics default
\default_output_format default
\output_sync 0
\bibtex_command biber
\index_command default
\paperfontsize 11
\spacing single
\use_hyperref false
\papersize letterpaper
\use_geometry true
\use_package amsmath 1
\use_package amssymb 1
\use_package cancel 1
\use_package esint 0
\use_package mathdots 0
\use_package mathtools 1
\use_package mhchem 1
\use_package stackrel 1
\use_package stmaryrd 1
\use_package undertilde 1
\cite_engine biblatex-natbib
\cite_engine_type authoryear
\biblio_style plain
\biblatex_bibstyle authoryear
\biblatex_citestyle authoryear
\use_bibtopic false
\use_indices false
\paperorientation portrait
\suppress_date false
\justification true
\use_refstyle 0
\use_minted 0
\index Index
\shortcut idx
\color #008000
\end_index
\leftmargin 0.75in
\topmargin 0.5in
\rightmargin 0.5in
\bottommargin 0.5in
\secnumdepth 5
\tocdepth 5
\paragraph_separation indent
\paragraph_indentation default
\is_math_indent 0
\math_numbering_side default
\quotes_style english
\dynamic_quotes 0
\papercolumns 1
\papersides 2
\paperpagestyle plain
\tracking_changes false
\output_changes false
\html_math_output 0
\html_css_as_file 0
\html_be_strict false
\end_header

\begin_body

\begin_layout Title
A Long Title:
\begin_inset Newline newline
\end_inset

Which Has Two lines
\end_layout

\begin_layout Subtitle
And a multiline
\begin_inset Newline newline
\end_inset

sub-title
\end_layout

\begin_layout Date
\begin_inset ERT
status open

\begin_layout Plain Layout


\backslash
today
\end_layout

\end_inset


\end_layout

\begin_layout Chapter
General information
\end_layout

\begin_layout Standard
\begin_inset ERT
status open

\begin_layout Plain Layout


\backslash
lipsum[1-30]
\end_layout

\end_inset


\end_layout

\end_body
\end_document


lee-mwe.pdf
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Re: Updating TexLive/2023 [RESOLVED]

2024-03-07 Thread Rich Shepard

On Thu, 7 Mar 2024, Rich Shepard wrote:


How do I fix this?


By re-installing TeXLive2023.

Rich
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Updating TexLive/2023

2024-03-07 Thread Rich Shepard

I just discovered a glitch in my shell script run from within /etc/cron.d/:
I hadn't specified ./tlmgr and ./fmtutil-sys, only the file names.

Having fixed that I ran ./tlmgr update --self --all and it failed:
running mktexlsr ...

tlmgr: mktexlsr failed (status -1), output:

Can't exec "kpsewhich": No such file or directory at ./tlmgr line 906.
Use of uninitialized value $TEXMFSYSVAR in scalar chomp at ./tlmgr line 906.
Can't exec "kpsewhich": No such file or directory at ./tlmgr line 907.
Use of uninitialized value $TEXMFSYSCONFIG in scalar chomp at ./tlmgr line 907.
Can't exec "kpsewhich": No such file or directory at ./tlmgr line 908.
Use of uninitialized value $TEXMFLOCAL in scalar chomp at ./tlmgr line 908.
Can't exec "kpsewhich": No such file or directory at ./tlmgr line 909.
Use of uninitialized value $TEXMFDIST in scalar chomp at ./tlmgr line 909.
Use of uninitialized value $TEXMFDIST in concatenation (.) or string at ./tlmgr 
line 920.
Can't exec "kpsewhich": No such file or directory at 
/usr/local/texlive/2023/tlpkg/TeXLive/TLUtils.pm line 3514.
Use of uninitialized value $tmfsysconf in scalar chomp at 
/usr/local/texlive/2023/tlpkg/TeXLive/TLUtils.pm line 3514.
Use of uninitialized value $tmfsysconf in concatenation (.) or string at 
/usr/local/texlive/2023/tlpkg/TeXLive/TLUtils.pm line 3515.
Cannot open /web2c/updmap.cfg for writing: No such file or directory at 
/usr/local/texlive/2023/tlpkg/TeXLive/TLUtils.pm line 3661.

When I look at line 906 and following, tlmgr it seems to be where it should
be:
  chomp(my $TEXMFSYSVAR = `kpsewhich -var-value=TEXMFSYSVAR`);
  chomp(my $TEXMFSYSCONFIG = `kpsewhich -var-value=TEXMFSYSCONFIG`);
  chomp(my $TEXMFLOCAL = `kpsewhich -var-value=TEXMFLOCAL`);
  chomp(my $TEXMFDIST = `kpsewhich -var-value=TEXMFDIST`);

How do I fix this?

TIA,

Rich
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Re: I FUBAR'd preamble: no page numbers or footer text

2024-03-07 Thread Rich Shepard

On Thu, 7 Mar 2024, Rich Shepard wrote:


Well! I'll be. Yes, that was the problem. Perhaps because the original
margins I set were for letter size pages, not executive, and were too
large for the smaller text area. Think I'll change the paper size back to
letter.


Unfortunately, that fixed providing header and footer text and page numbers
but greatly increased the margins. BTW, this doc was letter size to begin;
using default margins the text area was very small. Setting the margins to
0.5 in (and inner to 0.75 in) provided the expected text area size. When
trying to compile the MWE with lipsum[] text is when the error appeared.

Now, I'm getting build errors (after hitting a LyX bug that was not
explained, but crashed the application.)

Copies of mwe.lyx and the mwe-error.log attached.

Rich
#LyX 2.3 created this file. For more info see http://www.lyx.org/
\lyxformat 544
\begin_document
\begin_header
\save_transient_properties true
\origin unavailable
\textclass scrreprt
\begin_preamble
\date{}
\usepackage{lipsum}
\usepackage{mathpazo,amssymb}
\usepackage{graphicx,relsize}
\usepackage{scrlayer-scrpage}
\usepackage{xcolor,colortbl}
\usepackage{chngcntr}
\counterwithout{figure}{section}
\definecolor{lightgray}{gray}{0.8}
\pagestyle{scrheadings}
\lehead{Biological Evaluation}
\rohead{Biological Evaluation}
\refoot{Applied Ecosystem Services, LLC}
\lofoot{Applied Ecosystem Services, LLC}
\automark*{section}
\end_preamble
\options headsepline=on, footsepline=on
\use_default_options true
\maintain_unincluded_children false
\language english
\language_package default
\inputencoding utf8
\fontencoding global
\font_roman "default" "default"
\font_sans "default" "default"
\font_typewriter "default" "default"
\font_math "auto" "auto"
\font_default_family default
\use_non_tex_fonts false
\font_sc false
\font_osf false
\font_sf_scale 100 100
\font_tt_scale 100 100
\use_microtype false
\use_dash_ligatures true
\graphics default
\default_output_format pdf2
\output_sync 0
\bibtex_command biber
\index_command default
\paperfontsize default
\spacing single
\use_hyperref false
\papersize letterpaper
\use_geometry true
\use_package amsmath 1
\use_package amssymb 1
\use_package cancel 1
\use_package esint 0
\use_package mathdots 0
\use_package mathtools 1
\use_package mhchem 1
\use_package stackrel 1
\use_package stmaryrd 1
\use_package undertilde 1
\cite_engine biblatex-natbib
\cite_engine_type authoryear
\biblatex_bibstyle authoryear
\biblatex_citestyle authoryear
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\suppress_date false
\justification true
\use_refstyle 0
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\index Index
\shortcut idx
\color #008000
\end_index
\leftmargin 0.75in
\topmargin 0.5in
\rightmargin 0.5in
\bottommargin 0.5in
\headsep 0in
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\tocdepth 2
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\defskip medskip
\is_math_indent 0
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\dynamic_quotes 0
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\papersides 2
\paperpagestyle plain
\tracking_changes false
\output_changes false
\html_math_output 0
\html_css_as_file 0
\html_be_strict false
\end_header

\begin_body

\begin_layout Title
This is a long title:
\begin_inset Newline newline
\end_inset

It covers two lines
\end_layout

\begin_layout Subtitle
And this is a subtitle
\end_layout

\begin_layout Date
\begin_inset ERT
status open

\begin_layout Plain Layout


\backslash
date
\end_layout

\end_inset


\end_layout

\begin_layout Chapter
Introduction
\end_layout

\begin_layout Section
Section
\end_layout

\begin_layout Standard
\begin_inset ERT
status open

\begin_layout Plain Layout


\backslash
lipsum[1-40]
\end_layout

\end_inset


\end_layout

\end_body
\end_document
This is pdfTeX, Version 3.141592653-2.6-1.40.25 (TeX Live 2023) (preloaded 
format=pdflatex 2024.1.2)  7 MAR 2024 06:12
entering extended mode
 restricted \write18 enabled.
 %&-line parsing enabled.
**mwe.tex
(./mwe.tex
LaTeX2e <2023-11-01>
L3 programming layer <2023-12-11>

(/usr/local/texlive/2023/texmf-dist/tex/latex/koma-script/scrreprt.cls
Document Class: scrreprt 2023/07/07 v3.41 KOMA-Script document class (report)
(/usr/local/texlive/2023/texmf-dist/tex/latex/koma-script/scrkbase.sty
Package: scrkbase 2023/07/07 v3.41 KOMA-Script package (KOMA-Script-dependent b
asics and keyval usage)
(/usr/local/texlive/2023/texmf-dist/tex/latex/koma-script/scrbase.sty
Package: scrbase 2023/07/07 v3.41 KOMA-Script package (KOMA-Script-independent 
basics and keyval usage)
(/usr/local/texlive/2023/texmf-dist/tex/latex/koma-script/scrlfile.sty
Package: scrlfile 2023/07/07 v3.41 KOMA-Script package (file load hooks)
(/usr/local/texlive/2023/texmf-dist/tex/latex/koma-script/scrlfile-hook.sty
Package: scrlfile-hook 2023/07/07 v3.41 KOMA-Script package (using LaTeX hooks)

(/usr/local/texlive/2023/texmf-dist/tex/latex/koma-script/scrlogo.sty
Package: scrlogo 2023/07/07 v3.41 KOMA-Script package (logo)
))) (/usr/

Re: I FUBAR'd preamble: no page numbers or footer text [FIXED]

2024-03-07 Thread Rich Shepard

On Thu, 7 Mar 2024, Kornel Benko wrote:


Using
Document->Settings...->Page Margins->Default margins
shows the page numbering. So something in your settings is wrong.
Just my 2 cents.


Kornel,

Well! I'll be. Yes, that was the problem. Perhaps because the original
margins I set were for letter size pages, not executive, and were too large
for the smaller text area. Think I'll change the paper size back to letter.

Many thanks!

Regards,

Rich
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Re: I FUBAR'd preamble: no page numbers or footer text

2024-03-06 Thread Rich Shepard

On Wed, 6 Mar 2024, Rich Shepard wrote:


I don't see where the page number should be defined. Attached is a similar
document from last May. The page layout style is 'plain' and the preamble
contains this:
\date{}
%\usepackage{ftnxtra}
\usepackage{mathpazo,amssymb}
\usepackage{graphicx,relsize}
\usepackage{scrlayer-scrpage}
\usepackage{xcolor,colortbl}
\usepackage{chngcntr,xurl}
\counterwithout{figure}{section}
\definecolor{lightgray}{gray}{0.8}
\pagestyle{scrheadings}
\lehead{Biological Evaluation}
\rohead{Biological Evaluation}
\refoot{Applied Ecosystem Services, LLC}
\lofoot{Applied Ecosystem Services, LLC}
\automark*{section}

When I print page 2 of that document the header text, footer text, and page
number all appear with horizontal lines separating them from the text area.
See attached,


Well, I'm totally confused. I saved this document as mwe2.lyx, stripped all
but the first page, added the lipsum package, saved, and compiled. Now this
mwe2.pdf has the header text but only a horizontal line at the footer.
mwe2.lyx attached.

This all used to work and I've no idea what's changed. I do need to get this
resolved ASAP as I have a client who needs to submit these docs to
regulators for permit approvals.

BTW, reading the KOMA-Script manual from a year ago I don't see what's
wrong.

Regards,

Rich#LyX 2.3 created this file. For more info see http://www.lyx.org/
\lyxformat 544
\begin_document
\begin_header
\save_transient_properties true
\origin unavailable
\textclass scrreprt
\begin_preamble
\date{}
\usepackage{lipsum}
\usepackage{mathpazo,amssymb}
\usepackage{graphicx,relsize}
\usepackage{scrlayer-scrpage}
\usepackage{xcolor,colortbl}
\usepackage{chngcntr,xurl}
\counterwithout{figure}{section}
\definecolor{lightgray}{gray}{0.8}
\pagestyle{scrheadings}
\lehead{Biological Evaluation}
\rohead{Biological Evaluation}
\refoot{Applied Ecosystem Services, LLC}
\lofoot{Applied Ecosystem Services, LLC}
\automark*{section}
\end_preamble
\options headsepline=on, footsepline=on
\use_default_options true
\maintain_unincluded_children false
\language english
\language_package default
\inputencoding utf8
\fontencoding global
\font_roman "default" "default"
\font_sans "default" "default"
\font_typewriter "default" "default"
\font_math "auto" "auto"
\font_default_family default
\use_non_tex_fonts false
\font_sc false
\font_osf false
\font_sf_scale 100 100
\font_tt_scale 100 100
\use_microtype false
\use_dash_ligatures true
\graphics default
\default_output_format pdf2
\output_sync 0
\bibtex_command biber
\index_command default
\paperfontsize default
\spacing single
\use_hyperref false
\papersize letterpaper
\use_geometry true
\use_package amsmath 1
\use_package amssymb 1
\use_package cancel 1
\use_package esint 0
\use_package mathdots 0
\use_package mathtools 1
\use_package mhchem 1
\use_package stackrel 1
\use_package stmaryrd 1
\use_package undertilde 1
\cite_engine biblatex-natbib
\cite_engine_type authoryear
\biblatex_bibstyle authoryear
\biblatex_citestyle authoryear
\use_bibtopic false
\use_indices false
\paperorientation portrait
\suppress_date false
\justification true
\use_refstyle 0
\use_minted 0
\index Index
\shortcut idx
\color #008000
\end_index
\leftmargin 0.75in
\topmargin 0.5in
\rightmargin 0.5in
\bottommargin 0.5in
\secnumdepth 3
\tocdepth 3
\paragraph_separation indent
\paragraph_indentation default
\is_math_indent 0
\math_numbering_side default
\quotes_style english
\dynamic_quotes 0
\papercolumns 1
\papersides 2
\paperpagestyle plain
\tracking_changes false
\output_changes false
\html_math_output 0
\html_css_as_file 0
\html_be_strict false
\end_header

\begin_body

\begin_layout Title
Title
\end_layout

\begin_layout Subtitle
Author
\end_layout

\begin_layout Date
\begin_inset ERT
status open

\begin_layout Plain Layout


\backslash
today
\end_layout

\end_inset


\end_layout

\begin_layout Standard
\begin_inset CommandInset toc
LatexCommand tableofcontents

\end_inset


\end_layout

\begin_layout Chapter
Introduction
\end_layout

\begin_layout Standard
\begin_inset ERT
status open

\begin_layout Plain Layout


\backslash
lipsum[1-30]
\end_layout

\end_inset


\end_layout

\end_body
\end_document
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Re: I FUBAR'd preamble: no page numbers or footer text

2024-03-06 Thread Rich Shepard

On Wed, 6 Mar 2024, Richard Kimberly Heck wrote:


You redefined all the headings and footers and didn't include the page
number.


Riki,

I don't see where the page number should be defined. Attached is a similar
document from last May. The page layout style is 'plain' and the preamble
contains this:
\date{}
%\usepackage{ftnxtra}
\usepackage{mathpazo,amssymb}
\usepackage{graphicx,relsize}
\usepackage{scrlayer-scrpage}
\usepackage{xcolor,colortbl}
\usepackage{chngcntr,xurl}
\counterwithout{figure}{section}
\definecolor{lightgray}{gray}{0.8}
\pagestyle{scrheadings}
\lehead{Biological Evaluation}
\rohead{Biological Evaluation}
\refoot{Applied Ecosystem Services, LLC}
\lofoot{Applied Ecosystem Services, LLC}
\automark*{section}

When I print page 2 of that document the header text, footer text, and page
number all appear with horizontal lines separating them from the text area.
See attached,

In the MWE the page layout is the same (plain) and I added the
automark*{Section} to the preamble. But only the header text (no separating
horizontal line) appears.

Where else might there be a difference? I'm not seeing it in the settings.

Thanks,

Rich

example-page.pdf
Description: Adobe PDF document
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I FUBAR'd preamble: no page numbers or footer text

2024-03-06 Thread Rich Shepard

I don't know how I managed to FUBAR my preamble setting so there are no page
numbers or footer text. But I did. :-(

Attached is a MWE.

Please show me what I did wrong because this is affecting many docs.

TIA,

Rich#LyX 2.3 created this file. For more info see http://www.lyx.org/
\lyxformat 544
\begin_document
\begin_header
\save_transient_properties true
\origin unavailable
\textclass scrreprt
\begin_preamble
\date{}
\usepackage{lipsum}
\usepackage{mathpazo,amssymb}
\usepackage{graphicx,relsize}
\usepackage{scrlayer-scrpage}
\usepackage{xcolor,colortbl}
\usepackage{chngcntr}
\usepackage{xurl}
\counterwithout{figure}{section}
\definecolor{lightgray}{gray}{0.8}
\pagestyle{scrheadings}
\lehead{Steelhead Trout}
\rohead{Steelhead Trout}
\refoot{Applied Ecosystem Services, LLC}
\lofoot{Applied Ecosystem Services, LLC}
\end_preamble
\use_default_options false
\maintain_unincluded_children false
\language english
\language_package default
\inputencoding auto
\fontencoding global
\font_roman "palatino" "default"
\font_sans "avant" "default"
\font_typewriter "libertine-mono" "default"
\font_math "auto" "auto"
\font_default_family default
\use_non_tex_fonts false
\font_sc false
\font_osf false
\font_sf_scale 100 100
\font_tt_scale 100 100
\use_microtype false
\use_dash_ligatures true
\graphics default
\default_output_format default
\output_sync 0
\bibtex_command biber
\index_command default
\paperfontsize 11
\spacing single
\use_hyperref false
\papersize executivepaper
\use_geometry true
\use_package amsmath 1
\use_package amssymb 1
\use_package cancel 1
\use_package esint 0
\use_package mathdots 0
\use_package mathtools 1
\use_package mhchem 1
\use_package stackrel 1
\use_package stmaryrd 1
\use_package undertilde 1
\cite_engine biblatex-natbib
\cite_engine_type authoryear
\biblatex_bibstyle authoryear
\biblatex_citestyle authoryear
\use_bibtopic false
\use_indices false
\paperorientation portrait
\suppress_date false
\justification true
\use_refstyle 0
\use_minted 0
\index Index
\shortcut idx
\color #008000
\end_index
\leftmargin 0.75in
\topmargin 0.5in
\rightmargin 0.5in
\bottommargin 0.5in
\secnumdepth 5
\tocdepth 5
\paragraph_separation indent
\paragraph_indentation default
\is_math_indent 0
\math_numbering_side default
\quotes_style english
\dynamic_quotes 0
\papercolumns 1
\papersides 2
\paperpagestyle headings
\tracking_changes false
\output_changes false
\html_math_output 0
\html_css_as_file 0
\html_be_strict false
\end_header

\begin_body

\begin_layout Title
Title
\end_layout

\begin_layout Author
Author
\end_layout

\begin_layout Date
\begin_inset ERT
status open

\begin_layout Plain Layout


\backslash
today
\end_layout

\end_inset


\end_layout

\begin_layout Standard
\begin_inset CommandInset toc
LatexCommand tableofcontents

\end_inset


\end_layout

\begin_layout Chapter
Introduction
\end_layout

\begin_layout Standard
\begin_inset ERT
status open

\begin_layout Plain Layout


\backslash
lipsum[1-20]
\end_layout

\end_inset


\end_layout

\end_body
\end_document
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Re: Representing mu in bibliography source file

2024-03-06 Thread Rich Shepard

On Wed, 6 Mar 2024, Herbert Voss wrote:


It should be an upright mu for a unit


Herbert,

Of course. It's not in a mathematical expression.

Regards,

Rich
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Re: Representing mu in bibliography source file

2024-03-06 Thread Rich Shepard

On Wed, 6 Mar 2024, Herbert Voss wrote:

You can put "$\mu$g" in a BibTeX entry and it should display properly in 
the document.


\textmu{}g for an upright µ


Herbert,

That's a better solution for upright text.

Thank you,

Rich
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Re: Representing mu in bibliography source file

2024-03-06 Thread Rich Shepard

On Wed, 6 Mar 2024, Paul Rubin wrote:


You can put "$\mu$g" in a BibTeX entry and it should display properly in
the document.


Paul,

I wondered about that. Thanks for the suggestion.

Regards,

Rich
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Representing mu in bibliography source file

2024-03-06 Thread Rich Shepard

I use JabRef for my bibliography database; it's in ASCII text file format. Some
abstracts report concentrations in micrograms and have been entered as 'ug.'
How can I enter the mu symbol so it displays properly in LyX documents?

Looking in /usr/share/X11/en_US.UTF-8/Compose I see multikey solutions;
i.e.,
 : "µ" mu # MICRO SIGN
 : "µ" mu # MICRO SIGN
 : "µ" mu # MICRO SIGN
but while these work in text files, they're not the same as \mu in LaTeX.

Help's appreciated.

Regards,

Rich
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RE: Documentation

2024-02-28 Thread Rich Shepard

On Wed, 28 Feb 2024, Bernt Lie via lyx-users wrote:


If you by "current release" mean LyX 2.3.7 (of January 2023), have you
looked at the LyX documents linked under Help? They are relatively
comprehensive.


+1 They're very helpful. Start from the top with Introduction and Tutorial.
Then start writing and looking at all menus. When you are unsure, go back to
the Help menu.

Rich
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Re: Which manual has appendix details?

2024-01-19 Thread Rich Shepard

On Fri, 19 Jan 2024, Hal Kierstead wrote:


I often find myself looking through several manuals trying to find
information. It would be much better if I could make a single search of
all manuals. Maybe there is a way and I just do not know it.


Hal,

While it's a kludge, you could compile each manual to a PDF, put them in a
directory, say /LyX/manuals/, then use pdfgrep to search them:
PDFGREP(1)Pdfgrep Manual
PDFGREP(1)

NAME
   pdfgrep - search PDF files for a regular expression

SYNOPSIS
   pdfgrep [OPTION...] PATTERN [FILE...]
   pdfgrep [OPTION...] [-e PATTERN | -f FILE] [FILE...]

DESCRIPTION
   Search for PATTERN in each PDF FILE and print matching lines. By 
default, PATTERN
   is an extended regular expression.

   pdfgrep tries to be mostly compatible with GNU grep with some 
PDF-specific
   distinctions and additional options. Most notably, -n prints page 
instead of line
   numbers.

A very useful tool.

Regards,

Rich
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Re: Which manual has appendix details?

2024-01-19 Thread Rich Shepard

On Fri, 19 Jan 2024, Paul Rubin wrote:


Section 6.4 of the User's Guide is titled "Appendices". It's rather brief,
so I don't know if it will answer your question(s).


Paul,

Thank you. When I scanned the sections in Chapter 6 I missed that one.

Regards,

Rich
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Which manual has appendix details?

2024-01-19 Thread Rich Shepard

I need to re-learn how to add multiple appendices. Using Document -> Add
appendix here after the Bibliography I don't remember how to access the
documents to insert in each appendix, and have them automatically labeled A,
B, C.

Looking in Tutorial, User's Guide, Additional Features, and Embedded Objects
I am not seeing an Appendix section. StackExchange uses LaTeX code for
answers, not LyX menu items.

A clue stick is needed.

TIA,

Rich
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Re: Compiling causes LyX to crash [UPDATE]

2024-01-18 Thread Rich Shepard

On Thu, 18 Jan 2024, Steve Litt wrote:


Sure you can. Reduce it down to your own MWE, and then replace the English
with nonsense Latin. The only thing remaining that's proprietary to the
client is any commands or environments specific to the client.


SteveT,

I'm done futzing with it. I'm using the PDF from last July (when it was last
compiled) and copying text into a new document. It's compiling each time I
complete a secion.

Thanks,

Rich
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Re: What controls figure numbering?

2024-01-18 Thread Rich Shepard

On Thu, 18 Jan 2024, Richard Kimberly Heck wrote:


I believe this is standard behavior for reports. There's no LyX option
that controls it, so far as I know. Using LaTeX, of course, you can do
anything you want.


Riki

Mea culpa! Six days stuck in the house because temps are below freezing and
there was a half-inch of ice (under the freezing rain) everywhere and I
blanked on that issue.

You're correct, of course.

Sigh,

Rich
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What controls figure numbering?

2024-01-18 Thread Rich Shepard

I'm recreating, under a different name, the doc that crashed LyX when I
tried to compile it. Using the KOMA-Script report class (scrreport.)

Because the only options for section numering that work are none or all I've
chosen to us all.

Chapter 1 has 3 figures; chapter 2 has 3 figures. In the prior version (and
all other report docs) the figures are numbered continously. Now, the new
doc re-numbers the chapter 2 figures 1--3 rather than 4--6.

Where is this controlled? I don't see any place in Document -> Settings.

TIA,

Rich
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Re: Extra space in moderncv doc [FIXED]

2024-01-18 Thread Rich Shepard

On Thu, 18 Jan 2024, Rich Shepard wrote:


Help needed.


Fixed it. I re-entered the second presentation, deleted the original, saved,
and compiled. No more extra space. I didn't see anything at the begining of
that flawed entry but re-entering it solved the problem.

Rich
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Extra space in moderncv doc

2024-01-18 Thread Rich Shepard

I found presentations from 18 years ago that needed to be added to my CV.
For a reason I haven't been able to find, there's an extra line between the
two entries in the attached MWE. A .tex file is also attached.

Help needed.

TIA,

Rich#LyX 2.3 created this file. For more info see http://www.lyx.org/
\lyxformat 544
\begin_document
\begin_header
\save_transient_properties true
\origin unavailable
\textclass moderncv
\begin_preamble
% adjust the page margins
%%\usepackage[scale=0.75]{geometry}
%%\usepackage{fancyhdr}
%%\fancyfoot[C]{\thepage}

\moderncvtheme[black]{classic}
% possible themes are "classic" and "casual"
% optional argument are 'blue' (default), 'orange', 'red', 'green', 'grey' and 
'roman' (for roman fonts, instead of sans serif fonts)

% required
\firstname{Rich}
% required
\familyname{Whome}

% optional, remove the line if not wanted
\title{Curriculum Vitae}

% optional
% \address{street and number}{postcode city}
% '\\' adds a line break
\address{someplace\protect\\[0.1em] \protect\\[0.2em]}

% optional
\phone{511}
% optional
\mobile{522}
% optional
%\fax{503-667-8863}
% optional
\email{m...@example.com}
% optional
\extrainfo{www.example.com}

% optional
% \photo[height]{name}
% 'height' is the height the picture is resized to
% 'name' is the name of the picture file
% photo[64pt]{CV-image}

% optional
% quote{"You only live twice." (an optional quote)}
\end_preamble
\use_default_options false
\maintain_unincluded_children false
\language english
\language_package default
\inputencoding auto
\fontencoding global
\font_roman "palatino" "default"
\font_sans "avant" "default"
\font_typewriter "libertine-mono" "default"
\font_math "auto" "auto"
\font_default_family default
\use_non_tex_fonts false
\font_sc false
\font_osf false
\font_sf_scale 100 100
\font_tt_scale 100 100
\use_microtype false
\use_dash_ligatures true
\graphics default
\default_output_format default
\output_sync 0
\bibtex_command default
\index_command default
\paperfontsize 11
\spacing single
\use_hyperref false
\papersize letterpaper
\use_geometry true
\use_package amsmath 1
\use_package amssymb 1
\use_package cancel 1
\use_package esint 0
\use_package mathdots 0
\use_package mathtools 1
\use_package mhchem 1
\use_package stackrel 1
\use_package stmaryrd 1
\use_package undertilde 1
\cite_engine basic
\cite_engine_type default
\biblio_style plain
\use_bibtopic false
\use_indices false
\paperorientation portrait
\suppress_date false
\justification true
\use_refstyle 0
\use_minted 0
\index Index
\shortcut idx
\color #008000
\end_index
\leftmargin 2cm
\topmargin 4cm
\bottommargin 2cm
\headsep 1.5cm
\secnumdepth 2
\tocdepth 2
\paragraph_separation skip
\defskip medskip
\is_math_indent 0
\math_numbering_side default
\quotes_style english
\dynamic_quotes 0
\papercolumns 1
\papersides 1
\paperpagestyle default
\tracking_changes false
\output_changes false
\html_math_output 0
\html_css_as_file 0
\html_be_strict false
\end_header

\begin_body

\begin_layout Standard
mwe
\end_layout

\begin_layout Entry
\begin_inset Argument 1
status open

\begin_layout Plain Layout
2006
\end_layout

\end_inset

 
\begin_inset Argument 2
status open

\begin_layout Plain Layout
Objective Environmental Planning/Permitting: A Breakthrough in Making Critical
 Decisions
\end_layout

\end_inset


\begin_inset Argument 3
status open

\begin_layout Plain Layout
Northwest Mining Association Annual Convention
\end_layout

\end_inset


\begin_inset Argument 4
status open

\begin_layout Plain Layout
Sparks, NV
\end_layout

\end_inset


\end_layout

\begin_layout Entry
\begin_inset Argument 1
status open

\begin_layout Plain Layout
2006
\end_layout

\end_inset


\begin_inset Argument 2
status open

\begin_layout Plain Layout
Environmental Decision-Making: A New Paradigm for Regulators
\end_layout

\end_inset


\begin_inset Argument 3
status open

\begin_layout Plain Layout
Bureau of Land Management, National Minerals Workshop
\end_layout

\end_inset


\begin_inset Argument 4
status open

\begin_layout Plain Layout
Sparks, NV
\end_layout

\end_inset


\end_layout

\end_body
\end_document


mwe.tex
Description: TeX document
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Numbering of sections control

2024-01-17 Thread Rich Shepard

When I try to change which paragraph environments can be numbered (and
entered in the ToC) by moving the circle I cannot change their posision
along the line. They can be moved to only the extremes: none or all.

What might cause this with 2.3.6.1?

Regards,

Rich
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Re: Compiling causes LyX to crash [UPDATE]

2024-01-17 Thread Rich Shepard

On Wed, 17 Jan 2024, Rich Shepard wrote:


Modifying a fifth document I notice that a sub-section is not numbered and
while I can save it pressing ctrl-h to build it with pdflatex causes a
message box to appear saying I've hit a bug.


I corrected a couple of spelling errors in one of the other files, saved,
and compiled it without error. This is a client document so I cannot make a
MWE from it or share it with the world.

Regards,

Rich
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Compiling causes LyX to crash

2024-01-17 Thread Rich Shepard

Using lyx-2.3.6.1 I've worked today on four documents, saving and compiling
them with pdflatex. No problems, as usual.

Modifying a fifth document I notice that a sub-section is not numbered and
while I can save it pressing ctrl-h to build it with pdflatex causes a
message box to appear saying I've hit a bug. The message contains:
(  1) /usr/bin/lyx: /usr/bin/lyx() [0x981cd5]
(  2) /usr/bin/lyx: /usr/bin/lyx() [0x9f5032]
(  3) /usr/lib64/libQtCore.so.4: QObject::event(QEvent*)
(  4) /usr/lib64/libQtGui.so.4: QApplicationPrivate::notify_helper(QObject*, 
QEvent*)
(  5) /usr/lib64/libQtGui.so.4: QApplication::notify(QObject*, QEvent*)
(  6) /usr/bin/lyx: /usr/bin/lyx() [0x997386]
(  7) /usr/lib64/libQtCore.so.4: QCoreApplication::notifyInternal(QObject*, 
QEvent*)
(  8) /usr/lib64/libQtCore.so.4: 
QCoreApplicationPrivate::sendPostedEvents(QObject*, int, QThreadData*)
(  9) /usr/lib64/libQtCore.so.4: /usr/lib64/libQtCore.so.4(+0x1bef3e) 
[0x7fa06b936f3e]
( 10) /usr/lib64/libglib-2.0.so.0: 
/usr/lib64/libglib-2.0.so.0(g_main_context_dispatch+0x287) [0x7fa06d548787]
( 11) /usr/lib64/libglib-2.0.so.0: /usr/lib64/libglib-2.0.so.0(+0x489b8) 
[0x7fa06d5489b8]
( 12) /usr/lib64/libglib-2.0.so.0: 
/usr/lib64/libglib-2.0.so.0(g_main_context_iteration+0x2c) [0x7fa06d548a5c]
( 13) /usr/lib64/libQtCore.so.4: 
QEventDispatcherGlib::processEvents(QFlags)
( 14) /usr/lib64/libQtGui.so.4: /usr/lib64/libQtGui.so.4(+0x2a29e6) 
[0x7fa06bf149e6]
( 15) /usr/lib64/libQtCore.so.4: 
QEventLoop::processEvents(QFlags)
( 16) /usr/lib64/libQtCore.so.4: 
QEventLoop::exec(QFlags)
( 17) /usr/lib64/libQtCore.so.4: QCoreApplication::exec()
( 18) /usr/bin/lyx: /usr/bin/lyx() [0x5f667d]
( 19) /usr/bin/lyx: /usr/bin/lyx() [0x469816]
( 20) /lib64/libc.so.6: /lib64/libc.so.6(__libc_start_main+0xf0) 
[0x7fa06a5d97d0]
( 21) /usr/bin/lyx: /usr/bin/lyx() [0x475e89]

Not before with any LyX version have I encountered this. Help's needed!

TIA,

Rich
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Re: File -> Import -> Plain text (join lines) opens new file [RESOLVED]

2024-01-17 Thread Rich Shepard



On Tue, 16 Jan 2024, Rich Shepard wrote:


The Plain Text (join lines) version. Yes.


Paul, et al.:

Apparently LyX needed an overnight rest before it would insert the file.
It's all done now.

Regards,

Rich
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Re: File -> Import -> Plain text (join lines) opens new file

2024-01-16 Thread Rich Shepard

On Tue, 16 Jan 2024, Paul Rubin wrote:


Are you using Insert > File > Plain Text ... ?


Paul,

The Plain Text (join lines) version. Yes.

Regards,

Rich
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File -> Import -> Plain text (join lines) opens new file

2024-01-16 Thread Rich Shepard

I've not before had this problem: importing a .txt file into a .lyx
document. I'm trying to import a file import.txt ($ file input.txt 
input.txt: UTF-8 Unicode text) into an open LyX document. Instead it opens a

new file called input.lyx.

What might I be doing incorrectly and not seeing?

TIA,

Rich


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KOMA-Scipt report: indenting lists

2024-01-16 Thread Rich Shepard

I have a KOMA-Script report which is configured with numbered main topics
paragraphs and small-lettered sub-topic paragraphs all in the Standard
environment.

The indenting capabilities of the Indent environment are not available.

Is there a way to indent the lettered blocks of sub-topics in each numbered
topic?

TIA,

Rich

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Bug report: wrong unicode conversion from JabRef

2024-01-03 Thread Rich Shepard

Herbert Voss identified part of my issue of an accented character in a
bibiography citation is the bib_key. Removing the ã from the bib_key and
leaving it in the first author's name produced the attached citation image.

In the doc's preamble I inserted:
\usepackage{newunicodechar}
\newunicodechar{ã}{\~{a}}
but the resulting citation was still wrong.

Can this be fixed?

TIA,

Rich
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Re: Revising old LyX documents

2024-01-03 Thread Rich Shepard

On Wed, 3 Jan 2024, Herbert Voss wrote:


You'll find everything in the documentation. It is the class option
abstract=on


Herbert,

I missed seeing that I add it to the Document class custom text entry
widget. Now done.


and in the text body choose paragraph layout abstract for the text


Yes, I did that.

And no bibliography in this doc so no issues with that. :-)

Many thanks,

Rich
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Re: JabRef insertion to LyX fails with accented character

2024-01-03 Thread Rich Shepard

On Wed, 3 Jan 2024, Herbert Voss wrote:


I suppose again the "mergedate=..." option problem in the setting
of biblatex.


Herbert,

That's long gone.


In general biber uses the encoding from the main document unless
you explicitely call
biber --bibencoding=latin9 


And I've not done that.


Looks to me like these two are the source of the problems.


yes and no, because the bibliography is wrong, but should have some
entries. It is only a warning not an error.


Yes, changing the citation style from `Biblatex' to `Biblatex (natbib mode)'
allowed the bibliography to be included in the PDF.

Why only with non-accented characters remains unanswered, but I doubt the
expected audience for this doc will notice any difference.

Many thanks,

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Re: Old font style names found in doc

2024-01-03 Thread Rich Shepard

On Wed, 3 Jan 2024, Herbert Voss wrote:


from your example I believe that you used bibtex with a bibtex style
(\bibliographystyle{...})  and not biblatex/biber ...
Look into the bibliography interface for the setting.


Herbert,

Actually, I accidently used the biblatex citation style rather than the
biblatex (natbib mode) citation style.

Changing the citation style to the latter flavor the bibliography is in the
PDF, but only if I remove the ã and replace it with a plain a.

Thanks,

Rich

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Revising old LyX documents

2024-01-03 Thread Rich Shepard

I'm revising several old LyX documents and running into many issues since
the TeXLive versions have been revised over the years.

For example, one doc written in 2010 using KOMA-Script report class used a
class option of 'abstraction.' That's deprecated and may well account for
deprecated font style labels as well as other issues.

Removing that option and adding `Abstract' using the abstract environment
under the ToC places the word directly under the ToC and no heading on the
following page with the abstract. According to the 2023-04-20 English
version of the KOMA-Script manual (page 71),

"3.8. Abstract

"Particularly with articles, more rarely with reports, there is an abstract,
or summary, directly beneath the title and before the table of contents.
When using an in-page title, this abstract is normally a kind of left- and
right-indented block. In comparison, the abstract appears as a chapter or
section when using title pages.

"abstract=simple switch

"In the standard classes, the abstract environment sets the text “Abstract”
centred before the abstract text. This used to be the normal practice. Since
then, reading newspapers has trained us to recognize a suitably highlighted
text at the beginning of an article or report as the abstract. This is even
more true when the text comes before the table of contents. It is also
confusing if, of all things, this title appears small and centred.
KOMA-Script offers the option to include or exclude the abstract’s title
with the abstract option. For simple switch , you can use any value from
table 2.5, page 41. The default for KOMA-Script is false."

That's not what I'm seeing in the LyX doc; see attached screenshot.

Where do I add a simple switch (true) if I'm using the LyX Abstract
environment?

In addition to adding the word Abstract above the abstract on the page
following the ToC are there general guidelines for updating old lyx
documents?

TIA,

Rich

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Re: JabRef insertion to LyX fails with accented character

2024-01-03 Thread Rich Shepard

On Wed, 3 Jan 2024, Herbert Voss wrote:


every problem is listed in the logfiles ...


Herbert,

Just re-exported to LaTeX (pdflatex) and ran pdflatex and biber.


.log


The .log file, line 725:
LaTeX Warning: Citation 'Ant=E3o2021' on page 5 undefined on input line
324.


.blg


The biodiversity.blg:
$ biber biodiversity 
INFO - This is Biber 2.19

INFO - Logfile is 'biodiversity.blg'
INFO - Reading 'biodiversity.bcf'
INFO - Found 12 citekeys in bib section 0
INFO - Processing section 0
INFO - Looking for bibtex file '/home/rshepard/documents/jabrefdb.bib' for 
section 0
INFO - LaTeX decoding ...
INFO - Found BibTeX data source '/home/rshepard/documents/jabrefdb.bib'
INFO - Overriding locale 'en-US' defaults 'variable = shifted' with 'variable = 
non-ignorable'
INFO - Overriding locale 'en-US' defaults 'normalization = NFD' with 
'normalization = prenormalized'
INFO - Sorting list 'nyt/global//global/global' of type 'entry' with template 
'nyt' and locale 'en-US'
INFO - No sort tailoring available for locale 'en-US'
INFO - Writing 'biodiversity.bbl' with encoding 'latin9'
INFO - Output to biodiversity.bbl
WARN - I didn't find a database entry for 'Ant=E3o2021' (section 0)
INFO - WARNINGS: 1

Two things:
1. Where is biber finding the latin9 encoding?
2. The string E3 is a hex color, not ã.

Looks to me like these two are the source of the problems.

Thanks,

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Re: Old font style names found in doc

2024-01-03 Thread Rich Shepard

On Wed, 3 Jan 2024, Herbert Voss wrote:


this depends to the author of the bibliography style. Which one your
are using?


Herbert,

The biblatex bibliography style is authoryear.

Regards,

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JabRef insertion to LyX fails with accented character

2024-01-03 Thread Rich Shepard

Now I've learned how to insert accented characters using my keyboard I
corrected the lead author's name in JabRef from Antao to Antão. This morning
when I tried compiling the document with that citation it failed to find the
non-accented record in the .bib.

I deleted the ??.?? citation and tried to push the accented one to the
document. It keeps failing; the citation is still ??.??. I'm really
surprised that this happens.

Is this a LyX or JabRef issue?

TIA,

Rich
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Re: Old font style names found in doc

2024-01-03 Thread Rich Shepard

On Wed, 3 Jan 2024, Herbert Voss wrote:


I suppose, that it is part of the bibstyle file *.bst


Herbert,

Then shouldn't this have been corrected in the most recent TeXLive2023?
There's only one citation (so far) in the doc and I've not had this issue in
other docs I've recently revised.

Regards,

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Re: Old font style names found in doc

2024-01-02 Thread Rich Shepard

On Tue, 2 Jan 2024, Rich Shepard wrote:


... bibliography entries (see attached.)


Now it is.

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Old font style names found in doc

2024-01-02 Thread Rich Shepard

Revising a 5-year old document (KOMA-Script report class) pdflatex
compilation fails because deprecated font styles (\sc, \bf) are found in
bibliography entries (see attached.)

Looking at the jabrefbib.bib file I do not find any \sc or \bf strings. In
LyX settings I find nothing pertinent in Fonts or Preamble. Where are these
font settings controlled? I need to replace them with the "new" font style
names (which I thought was done automagically with TeXLive2023.)

TIA,

Rich
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Re: Replacing long static table as floating

2024-01-02 Thread Rich Shepard

On Tue, 2 Jan 2024, Rich Shepard wrote:


I've a document from 5 years ago that I'm revising. There is an 85 row long
table in it that I would like to float (as a long table) rather than
re-writing the whole table. Is there a way to do this?


Oops! The Wiki tells me that long tables do not float.

Furgeddaboutit. It stays where it is.

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Replacing long static table as floating

2024-01-02 Thread Rich Shepard

I've a document from 5 years ago that I'm revising. There is an 85 row long
table in it that I would like to float (as a long table) rather than
re-writing the whole table. Is there a way to do this?

TIA,

Rich
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Re: Adding accented character in JabRef [RESOLVED]

2024-01-02 Thread Rich Shepard

On Mon, 1 Jan 2024, Rich Shepard wrote:


An authors' name is Antao with the second 'a' accented with a tilde. I'm
not finding the proper syntax to produce that in the BibTeX source.


Found the solution that works here with Slackware and Xfce4. In ~/.Xmodmap I
added the line
keycode 133 = Multi_key

Opened JabRef and selected the paper with the first author's name Antão. By
pressing/releasing the windoze flag key off the left side of the space bar,
then pressing ~ and a there's now an ã in the JabRef entry, as well as in
this urxvt terminal running alpine. :-)

Thanks, everyone!

Regards,

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Re: Adding accented character in JabRef

2024-01-02 Thread Rich Shepard

On Tue, 2 Jan 2024, Richard Kimberly Heck wrote:

I'm seeing odd results with this as well. If I use the attached bib file, 
then \~A shows up just fine, but \~a does not. In the bbl file, it appears 
as:


\begin{thebibliography}{1}

\bibitem{Ant:Test}
Ant\ {a}o \~Antonia.
\newblock Whatever.
\newblock {\em Good One}, 2023.

\end{thebibliography}

Note the deleted tilde in the first name. The tilde has been moved to a 
non-breaking space.


Riki,

I, too, saw the blank replacing the tilde.

I just set a keyboard key to Compose. When I resolve the issue of no
bibliography in the pdflatex PDF I'll play with the accent issue.

Thanks,

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Re: String including \rightarrow works unless with other text

2024-01-02 Thread Rich Shepard

On Tue, 2 Jan 2024, Kornel Benko wrote:


Alternatively you could use symbols from Insert->Special
Character->Symbols...->Category: Arrows

or use unicode direct with
M-x unicode-insert 2192


Kornel,

Thank you. I'm used to using the unfortuately-named ERT so I added the $
where needed and that did the trick.

Regards,

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Re: String including \rightarrow works unless with other text [RESOLVED]

2024-01-02 Thread Rich Shepard

On Tue, 2 Jan 2024, Herbert Voss wrote:


$\rightarrow$  It must be in mathmode. However, insert it with the LyX
mathmode and you can insert the arrow as symbol.


Herbert,

Mea culpa! You and Paul pointed out that totally spaced using mathmode.
Adding the '$' was easier than inline math.

Thanks again,

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Re: String including \rightarrow works unless with other text

2024-01-02 Thread Rich Shepard

On Tue, 2 Jan 2024, Paul Rubin wrote:


Neither displays correctly for me. The issue is that you are inserting the
arrow as LaTeX without invoking math mode (at least in mwe2; in mwe it's
not even LaTeX). So the compiler guesses where to begin and end math mode,
and it does not guess correctly. (Quoth the LaTeX log: "I've inserted a
begin-math/end-math symbol since I think

you left one out. Proceed, with fingers crossed.")

The simple fix is to insert the arrows using math model (ctrl-M), as in the 
attached version of your second example.


Paul,

I saw that but missed the point that I needed to use math mode rather than
plain LaTeX/ERT.

Thanks,

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String including \rightarrow works unless with other text

2024-01-02 Thread Rich Shepard

I'm puzzled. In a document I display a series using \rightarrow to separate
the components. When I compile the document it displays as in the attached
mwe2.lyx file. When the string is by itself (mwe.lyx) it displays properly.

I suspect it's a matter of spacing but I haven't figured out where.

Help's needed.

TIA,

Rich#LyX 2.3 created this file. For more info see http://www.lyx.org/
\lyxformat 544
\begin_document
\begin_header
\save_transient_properties true
\origin unavailable
\textclass scrreprt
\begin_preamble
\date{}
\usepackage{mathpazo,amssymb}
\usepackage{graphicx,relsize}
\usepackage{scrlayer-scrpage}
\pagestyle{scrheadings}
\end_preamble
\use_default_options true
\maintain_unincluded_children false
\language english
\language_package default
\inputencoding utf8
\fontencoding global
\font_roman "palatino" "default"
\font_sans "avant" "default"
\font_typewriter "courier" "default"
\font_math "auto" "auto"
\font_default_family rmdefault
\use_non_tex_fonts false
\font_sc true
\font_osf false
\font_sf_scale 100 100
\font_tt_scale 100 100
\use_microtype false
\use_dash_ligatures false
\graphics default
\default_output_format default
\output_sync 0
\bibtex_command biber mergedate=compact
\index_command default
\paperfontsize 11
\spacing single
\use_hyperref false
\papersize executivepaper
\use_geometry true
\use_package amsmath 1
\use_package amssymb 1
\use_package cancel 0
\use_package esint 0
\use_package mathdots 1
\use_package mathtools 0
\use_package mhchem 1
\use_package stackrel 0
\use_package stmaryrd 0
\use_package undertilde 0
\cite_engine biblatex-natbib
\cite_engine_type authoryear
\biblatex_bibstyle authoryear
\biblatex_citestyle authoryear
\use_bibtopic false
\use_indices false
\paperorientation portrait
\suppress_date false
\justification true
\use_refstyle 0
\use_minted 0
\index Index
\shortcut idx
\color #008000
\end_index
\paperwidth 6in
\paperheight 9in
\leftmargin 0.75in
\topmargin 0.5in
\rightmargin 0.5in
\bottommargin 0.5in
\secnumdepth 2
\tocdepth 2
\paragraph_separation indent
\paragraph_indentation default
\is_math_indent 0
\math_numbering_side default
\quotes_style english
\dynamic_quotes 0
\papercolumns 1
\papersides 1
\paperpagestyle default
\tracking_changes false
\output_changes false
\html_math_output 0
\html_css_as_file 0
\html_be_strict false
\end_header

\begin_body

\begin_layout Standard
data {
\backslash
rightarrow} information {
\backslash
rightarrow} insight
\end_layout

\begin_layout Standard

\end_layout

\end_body
\end_document
#LyX 2.3 created this file. For more info see http://www.lyx.org/
\lyxformat 544
\begin_document
\begin_header
\save_transient_properties true
\origin unavailable
\textclass scrreprt
\begin_preamble
\date{}
\usepackage{mathpazo,amssymb}
\usepackage{graphicx,relsize}
\usepackage{scrlayer-scrpage}
\pagestyle{scrheadings}
\end_preamble
\use_default_options true
\maintain_unincluded_children false
\language english
\language_package default
\inputencoding utf8
\fontencoding global
\font_roman "palatino" "default"
\font_sans "avant" "default"
\font_typewriter "courier" "default"
\font_math "auto" "auto"
\font_default_family rmdefault
\use_non_tex_fonts false
\font_sc true
\font_osf false
\font_sf_scale 100 100
\font_tt_scale 100 100
\use_microtype false
\use_dash_ligatures false
\graphics default
\default_output_format default
\output_sync 0
\bibtex_command biber mergedate=compact
\index_command default
\paperfontsize 11
\spacing single
\use_hyperref false
\papersize executivepaper
\use_geometry true
\use_package amsmath 1
\use_package amssymb 1
\use_package cancel 0
\use_package esint 0
\use_package mathdots 1
\use_package mathtools 0
\use_package mhchem 1
\use_package stackrel 0
\use_package stmaryrd 0
\use_package undertilde 0
\cite_engine biblatex-natbib
\cite_engine_type authoryear
\biblatex_bibstyle authoryear
\biblatex_citestyle authoryear
\use_bibtopic false
\use_indices false
\paperorientation portrait
\suppress_date false
\justification true
\use_refstyle 0
\use_minted 0
\index Index
\shortcut idx
\color #008000
\end_index
\paperwidth 6in
\paperheight 9in
\leftmargin 0.75in
\topmargin 0.5in
\rightmargin 0.5in
\bottommargin 0.5in
\secnumdepth 2
\tocdepth 2
\paragraph_separation indent
\paragraph_indentation default
\is_math_indent 0
\math_numbering_side default
\quotes_style english
\dynamic_quotes 0
\papercolumns 1
\papersides 1
\paperpagestyle default
\tracking_changes false
\output_changes false
\html_math_output 0
\html_css_as_file 0
\html_be_strict false
\end_header

\begin_body

\begin_layout Standard
While the sequence data 
\begin_inset ERT
status open

\begin_layout Plain Layout

{
\backslash
rightarrow}
\end_layout

\end_inset

 information 
\begin_inset ERT
status open

\begin_layout Plain Layout

{
\backslash
rightarrow}
\end_layout

\end_inset

 insight requires a solid base in terms of data quantity, quality, and relevance
 the quality component is sometimes the most difficult to evaluate.
 Data quality refers to the 

Re: Adding accented character in JabRef

2024-01-02 Thread Rich Shepard

On Tue, 2 Jan 2024, Richard Kimberly Heck wrote:

Is JabRef saving them that way? I've had problems with it saving such things 
as Unicode.


Riki,

Nope. It tells me there's an unexpected '(' in the string.

I'll ask on the slackware mail list how to set a compose key using the
right-side alt key.

Sigh,

Rich
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Re: Adding accented character in JabRef

2024-01-02 Thread Rich Shepard

On Tue, 2 Jan 2024, Paul Rubin wrote:


I forget which Linux distro you use, but you might want to check whether
there is a keyboard layout option for the compose key. There is on Mint. I
set it to the right alt key, so I can just type right-alt, " and a letter
(three separate key strokes, not a chord) to get an umlaut or right-alt,
~, n to get ñ, etc.


Paul,

I use Slackware. In ~/.keymap I have:
# Exchange the left Control key and the Caps Lock key on the keyboard
keymaps 0-2,4-6,8-9,12
keycode 58 = Control
keycode 29 = Caps_Lock

I'll ask on the slackware mail list how to create a compose key.

Thanks,

Rich
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Re: Adding accented character in JabRef

2024-01-02 Thread Rich Shepard

On Tue, 2 Jan 2024, José Matos wrote:


https://en.wikipedia.org/wiki/AltGr_key


José,

That explains it: there's not an alt-graph key on US keyboards.

Thanks,

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Re: Adding accented character in JabRef

2024-01-02 Thread Rich Shepard

On Tue, 2 Jan 2024, Herbert Voss wrote:


sure ... but also
Linux: AltGr+a


Herbert,

What's the AltGr chord?

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Re: Adding accented character in JabRef

2024-01-02 Thread Rich Shepard

On Tue, 2 Jan 2024, Herbert Voss wrote:


\~a   or \~{a}
However, you should be able to insert directly ã


Herbert,

It didn't like the first two. I need to learn how to enter it directly in
using /usr/share/X11/locale/en_US.UTF-8/Compose.

Thanks,

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Adding accented character in JabRef

2024-01-01 Thread Rich Shepard

An authors' name is Antao with the second 'a' accented with a tilde. I'm not
finding the proper syntax to produce that in the BibTeX source.

I tried {~}a and \{~}a and some other variants without success.

A cluestick is needed.

TIA,

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Using LaTeX \rightarrow symbol

2023-12-29 Thread Rich Shepard

In this document I have the string,
data {\rightarrow} information {\rightarrow} insight

When pdflatex tries to compile the document I see these errors:
there's a mis-matched expl3.sty (the one installed is dated 2023-12-11.)

A MWE is attached.

Please teach me how to fix this type of error.

TIA,

Rich#LyX 2.3 created this file. For more info see http://www.lyx.org/
\lyxformat 544
\begin_document
\begin_header
\save_transient_properties true
\origin unavailable
\textclass scrreprt
\begin_preamble
\date{}
\usepackage{mathpazo,amssymb}
\usepackage{graphicx,relsize}
\usepackage{scrlayer-scrpage}
\pagestyle{scrheadings}
\end_preamble
\use_default_options true
\maintain_unincluded_children false
\language english
\language_package default
\inputencoding utf8
\fontencoding global
\font_roman "palatino" "default"
\font_sans "avant" "default"
\font_typewriter "courier" "default"
\font_math "auto" "auto"
\font_default_family rmdefault
\use_non_tex_fonts false
\font_sc true
\font_osf false
\font_sf_scale 100 100
\font_tt_scale 100 100
\use_microtype false
\use_dash_ligatures false
\graphics default
\default_output_format default
\output_sync 0
\bibtex_command biber mergedate=compact
\index_command default
\paperfontsize 11
\spacing single
\use_hyperref false
\papersize executivepaper
\use_geometry true
\use_package amsmath 1
\use_package amssymb 1
\use_package cancel 0
\use_package esint 0
\use_package mathdots 1
\use_package mathtools 0
\use_package mhchem 1
\use_package stackrel 0
\use_package stmaryrd 0
\use_package undertilde 0
\cite_engine biblatex-natbib
\cite_engine_type authoryear
\biblatex_bibstyle authoryear
\biblatex_citestyle authoryear
\use_bibtopic false
\use_indices false
\paperorientation portrait
\suppress_date false
\justification true
\use_refstyle 0
\use_minted 0
\index Index
\shortcut idx
\color #008000
\end_index
\paperwidth 6in
\paperheight 9in
\leftmargin 0.75in
\topmargin 0.5in
\rightmargin 0.5in
\bottommargin 0.5in
\secnumdepth 2
\tocdepth 2
\paragraph_separation indent
\paragraph_indentation default
\is_math_indent 0
\math_numbering_side default
\quotes_style english
\dynamic_quotes 0
\papercolumns 1
\papersides 1
\paperpagestyle default
\tracking_changes false
\output_changes false
\html_math_output 0
\html_css_as_file 0
\html_be_strict false
\end_header

\begin_body

\begin_layout Standard
data {
\backslash
rightarrow} information {
\backslash
rightarrow} insight
\end_layout

\begin_layout Standard

\end_layout

\end_body
\end_document
This is pdfTeX, Version 3.141592653-2.6-1.40.25 (TeX Live 2023) (preloaded 
format=pdflatex 2023.11.19)  29 DEC 2023 10:54
entering extended mode
 restricted \write18 enabled.
 %&-line parsing enabled.
**mwe.tex
(./mwe.tex
LaTeX2e <2023-11-01>
L3 programming layer <2023-11-09>

(/usr/local/texlive/2023/texmf-dist/tex/latex/koma-script/scrreprt.cls
Document Class: scrreprt 2023/07/07 v3.41 KOMA-Script document class (report)
(/usr/local/texlive/2023/texmf-dist/tex/latex/koma-script/scrkbase.sty
Package: scrkbase 2023/07/07 v3.41 KOMA-Script package (KOMA-Script-dependent b
asics and keyval usage)
(/usr/local/texlive/2023/texmf-dist/tex/latex/koma-script/scrbase.sty
Package: scrbase 2023/07/07 v3.41 KOMA-Script package (KOMA-Script-independent 
basics and keyval usage)
(/usr/local/texlive/2023/texmf-dist/tex/latex/koma-script/scrlfile.sty
Package: scrlfile 2023/07/07 v3.41 KOMA-Script package (file load hooks)
(/usr/local/texlive/2023/texmf-dist/tex/latex/koma-script/scrlfile-hook.sty
Package: scrlfile-hook 2023/07/07 v3.41 KOMA-Script package (using LaTeX hooks)

(/usr/local/texlive/2023/texmf-dist/tex/latex/koma-script/scrlogo.sty
Package: scrlogo 2023/07/07 v3.41 KOMA-Script package (logo)
))) (/usr/local/texlive/2023/texmf-dist/tex/latex/graphics/keyval.sty
Package: keyval 2022/05/29 v1.15 key=value parser (DPC)
\KV@toks@=\toks17
)
Applying: [2021/05/01] Usage of raw or classic option list on input line 252.
Already applied: [/00/00] Usage of raw or classic option list on input line
 368.
)) (/usr/local/texlive/2023/texmf-dist/tex/latex/koma-script/tocbasic.sty
Package: tocbasic 2023/07/07 v3.41 KOMA-Script package (handling toc-files)
\scr@dte@tocline@numberwidth=\skip48
\scr@dte@tocline@numbox=\box51
)
Package tocbasic Info: omitting babel extension for `toc'
(tocbasic) because of feature `nobabel' available
(tocbasic) for `toc' on input line 135.
Package scrreprt Info: You've used standard option `11pt'.
(scrreprt) This is correct!
(scrreprt) Internally I'm using `fontsize=11pt'.
(scrreprt) If you'd like to set the option with \KOMAoptions,
(scrreprt) you'd have to use `fontsize=11pt' there
(scrreprt) instead of `11pt', too.
Class scrreprt Info: File `scrsize11pt.clo' used to setup font sizes on input l
ine 2688.
(/usr/local/texlive/2023/texmf-dist/tex/latex/koma-script/scrsize11pt.clo
File: scrsize11pt.clo 2023/07/07 v3.41 KOMA-Script font size class 

Re: Compiling error in updated document

2023-12-29 Thread Rich Shepard

On Fri, 29 Dec 2023, Rich Shepard wrote:


Can I remove fancyhdr.sty from within LyX?


Answer: Yep!

I changed the page style from fancy to default. That solved that problem.

There's a new one; time for a new thread.

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Re: Compiling error in updated document

2023-12-29 Thread Rich Shepard

On Fri, 29 Dec 2023, Herbert Voss wrote:


You are loading:
(/usr/local/texlive/2023/texmf-dist/tex/latex/fancyhdr/fancyhdr.sty
Package: fancyhdr 2022/11/09 v4.1 Extensive control of page headers and 
footers


Herbert,

While fancyhdr.sty was used in the original version, it's not in the revised
version. I saw that in the original, yet the Preamble seen in LyX contains:
\date{}
\usepackage{mathpazo,amssymb}
\usepackage{graphicx,relsize}
\usepackage{scrlayer-scrpage}
\pagestyle{scrheadings}
\usepackage{xurl}

Can I remove fancyhdr.sty from within LyX?

Regards,

Rich
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Compiling error in updated document

2023-12-29 Thread Rich Shepard

I've updated a document written originally in 2010. When I try to compile it
using pdflatex an error that \chead has already been defined (and there's no
\chead in the new document.)

Looking at the error log (attached) I see that the 13 years between versions
has seen many changes in KOMA-Script that are beyond my knowledge to
resolve.

There's no immediate need for correcting this revised doc; after the new
year is when I'll make use of it.

Help is needed, but enjoy the holiday first. :-)

Regards,

RichThis is pdfTeX, Version 3.141592653-2.6-1.40.25 (TeX Live 2023) (preloaded 
format=pdflatex 2023.11.19)  29 DEC 2023 08:56
entering extended mode
 restricted \write18 enabled.
 %&-line parsing enabled.
**best-available-science.tex
(./best-available-science.tex
LaTeX2e <2023-11-01>
L3 programming layer <2023-11-09>

(/usr/local/texlive/2023/texmf-dist/tex/latex/koma-script/scrreprt.cls
Document Class: scrreprt 2023/07/07 v3.41 KOMA-Script document class (report)
(/usr/local/texlive/2023/texmf-dist/tex/latex/koma-script/scrkbase.sty
Package: scrkbase 2023/07/07 v3.41 KOMA-Script package (KOMA-Script-dependent b
asics and keyval usage)
(/usr/local/texlive/2023/texmf-dist/tex/latex/koma-script/scrbase.sty
Package: scrbase 2023/07/07 v3.41 KOMA-Script package (KOMA-Script-independent 
basics and keyval usage)
(/usr/local/texlive/2023/texmf-dist/tex/latex/koma-script/scrlfile.sty
Package: scrlfile 2023/07/07 v3.41 KOMA-Script package (file load hooks)
(/usr/local/texlive/2023/texmf-dist/tex/latex/koma-script/scrlfile-hook.sty
Package: scrlfile-hook 2023/07/07 v3.41 KOMA-Script package (using LaTeX hooks)

(/usr/local/texlive/2023/texmf-dist/tex/latex/koma-script/scrlogo.sty
Package: scrlogo 2023/07/07 v3.41 KOMA-Script package (logo)
))) (/usr/local/texlive/2023/texmf-dist/tex/latex/graphics/keyval.sty
Package: keyval 2022/05/29 v1.15 key=value parser (DPC)
\KV@toks@=\toks17
)
Applying: [2021/05/01] Usage of raw or classic option list on input line 252.
Already applied: [/00/00] Usage of raw or classic option list on input line
 368.
)) (/usr/local/texlive/2023/texmf-dist/tex/latex/koma-script/tocbasic.sty
Package: tocbasic 2023/07/07 v3.41 KOMA-Script package (handling toc-files)
\scr@dte@tocline@numberwidth=\skip48
\scr@dte@tocline@numbox=\box51
)
Package tocbasic Info: omitting babel extension for `toc'
(tocbasic) because of feature `nobabel' available
(tocbasic) for `toc' on input line 135.
Package scrreprt Info: You've used standard option `11pt'.
(scrreprt) This is correct!
(scrreprt) Internally I'm using `fontsize=11pt'.
(scrreprt) If you'd like to set the option with \KOMAoptions,
(scrreprt) you'd have to use `fontsize=11pt' there
(scrreprt) instead of `11pt', too.

Class scrreprt Warning: You've used deprecated option `abstracton'.
(scrreprt)  Usage of this option indicates an old document
(scrreprt)  and changes compatibility level using
(scrreprt)  `abstract=true,version=first,
(scrreprt)  enabledeprecatedfontcommands' that may result
(scrreprt)  in further warnings.
(scrreprt)  If you don't want this, you should simply
(scrreprt)  replace option `abstracton' by `abstract=true'.

Class scrreprt Info: Switching compatibility level to `first'.

Class scrreprt Warning: Switching back to an old KOMA-Script release does
(scrreprt)  not mean, that KOMA-Script is fully compatible with
(scrreprt)  the old release. If you need full compatibility
(scrreprt)  to an old KOMA-Script release, you should use that
(scrreprt)  old KOMA-Script release. However, in that case you
(scrreprt)  could also need old releases of other packages and
(scrreprt)  even of the LaTeX kernel.
(scrreprt)  You should also note, that the KOMA-Script developers
(scrreprt)  refuse support for documents using `version=first'.
(scrreprt)  We recommend to eliminate all deprecated options
(scrreprt)  and commands. We also recommend to not use option
(scrreprt)  `version', i.e., with other values than `last'.


Class scrreprt Warning: deprecated option `enabledeprecatedfontcommands'.
(scrreprt)  Note, that this option was already depreacted when
(scrreprt)  it has been defined. Support for old font commands
(scrreprt)  has been removed from KOMA-Script more than one
(scrreprt)  decade ago. It is not recommended to use them any
(scrreprt)  longer. Therefore usage of this class option also
(scrreprt)  is not recommended.

Class scrreprt Info: File `scrsize11pt.clo' used to setup font sizes on input l
ine 2688.
(/usr/local/texlive/2023/texmf-dist/tex/latex/koma-script/scrsize11pt.clo
File: scrsize11pt.clo 2023/07/07 v3.41 KOMA-Script font size class option (11pt
)
) 

Re: Strange Pacer Question

2023-12-28 Thread Rich Shepard

On Thu, 28 Dec 2023, John White wrote:


To file in Pacer, the document must be "flattened."  This poses no problem
with files created in lyx. However, whenever I import a Word file and
convert it to lyx, Pacer balks and refuses to accept the document unless I
"flatten" it. If I am at the office, I "flatten" it by printing out the
lyx document and, using the copier, scan it back to me. I then can upload
that scanned file to pacer. If I am at home, I "flatten" it by using "$
pdf2ps orig.pdf - | ps2pdf - flattened.pdf", which usually works.



My question is this: Do those who use Microsoft Word also have to
"flatten" files before filing in the federal courts or does Pacer just
accept Microsoft Word files "as is"? If so, there might be some sort of
anti-trust implications in all this.


John,

I defenstrated from Microsoft 26 years ago so cannot directly answer your
question. However, I might help reduce the time and effort to 'flatten' Word
docs without running them over in your car.

When I have a .doc/.docx file sent that I want to incorporate into a LyX
document I'll do either of two things:

1. Highlight the desired text in the Word document then use Edit -> Paste
Special -> Join Lines to put it in the LyX doc.

2. When I need the entire Word doc and it's sent as a PDF I use pdftotext,
then Insert -> Plain Text, Join Lines. If it's a .doc/.docx file I load it
in LibreOffice Writer then save as a text file before inserting it.

Since your LyX document is set to include line numbers I think these actions
would work for you.

Regards,

Rich



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Re: Two input parameter of lyx

2023-12-28 Thread Rich Shepard

On Thu, 28 Dec 2023, Jiahao Yan wrote:


I'm a fan of lyx but I meet a question when I use it. Sometimes we want
input two parameter with one command, like \textcolor{color}{text}, but
lyx will compile the command and the first curly braket, considering the
first parameter as none. I wonder if there is a solution. I would
appreciate it if any help!


Jiahao,

The second parameter should be in square brackets, not curly braces. Try
\textcolor{mycolor}[this text].

Regards,

Rich
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Re: Bibliography not shown in compiled PDF

2023-12-05 Thread Rich Shepard

On Tue, 5 Dec 2023, Rich Shepard wrote:


I just updated texlive2023; it showed utf8 as the encoding during the
process. Then I created a new KOMA-Script Report class called test.lyx
(attached). When I exported this file using LaTeX (pdflatex) it had latin
rather than utf8 as the input encoding.


Sigh. Again fingers were quicker than the brain.

Attachment here.

Rich#LyX 2.3 created this file. For more info see http://www.lyx.org/
\lyxformat 544
\begin_document
\begin_header
\save_transient_properties true
\origin unavailable
\textclass scrreprt
\begin_preamble
\date{}
\usepackage{mathpazo,amssymb}
\usepackage{graphicx,relsize}
\usepackage{scrlayer-scrpage}
\pagestyle{scrheadings}
\end_preamble
\use_default_options false
\maintain_unincluded_children false
\language english
\language_package default
\inputencoding auto
\fontencoding global
\font_roman "palatino" "default"
\font_sans "avant" "default"
\font_typewriter "courier" "default"
\font_math "auto" "auto"
\font_default_family rmdefault
\use_non_tex_fonts false
\font_sc true
\font_osf false
\font_sf_scale 100 100
\font_tt_scale 100 100
\use_microtype false
\use_dash_ligatures false
\graphics default
\default_output_format default
\output_sync 0
\bibtex_command biber mergedate=compact
\index_command default
\paperfontsize 11
\spacing single
\use_hyperref false
\papersize executivepaper
\use_geometry true
\use_package amsmath 1
\use_package amssymb 1
\use_package cancel 0
\use_package esint 0
\use_package mathdots 1
\use_package mathtools 0
\use_package mhchem 1
\use_package stackrel 0
\use_package stmaryrd 0
\use_package undertilde 0
\cite_engine biblatex-natbib
\cite_engine_type authoryear
\biblatex_bibstyle authoryear
\biblatex_citestyle authoryear
\use_bibtopic false
\use_indices false
\paperorientation portrait
\suppress_date false
\justification true
\use_refstyle 0
\use_minted 0
\index Index
\shortcut idx
\color #008000
\end_index
\paperwidth 6in
\paperheight 9in
\leftmargin 0.75in
\topmargin 0.5in
\rightmargin 0.5in
\bottommargin 0.5in
\secnumdepth 3
\tocdepth 3
\paragraph_separation indent
\paragraph_indentation default
\is_math_indent 0
\math_numbering_side default
\quotes_style english
\dynamic_quotes 0
\papercolumns 1
\papersides 2
\paperpagestyle default
\tracking_changes false
\output_changes false
\html_math_output 0
\html_css_as_file 0
\html_be_strict false
\end_header

\begin_body

\begin_layout Standard
Some text here.
\end_layout

\end_body
\end_document
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Re: Bibliography not shown in compiled PDF

2023-12-05 Thread Rich Shepard

On Tue, 5 Dec 2023, Rich Shepard wrote:


That is the user preamble! It _must_ be inserted by you.


Herbert,

I just updated texlive2023; it showed utf8 as the encoding during the
process. Then I created a new KOMA-Script Report class called test.lyx
(attached). When I exported this file using LaTeX (pdflatex) it had latin
rather than utf8 as the input encoding.

How can I change this in TeXLive2023 to force the input encoding to utf8?
This is all new.

Regards,

Rich

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Re: Bibliography not shown in compiled PDF

2023-12-05 Thread Rich Shepard

On Tue, 5 Dec 2023, Herbert Voss wrote:


That is the user preamble! It _must_ be inserted by you.


Herbert,

Here's the top of the preamble in a KOMA-Script report I revised a couple of
weeks ago:

%% LyX 2.3.6.1 created this file.  For more info, see http://www.lyx.org/.
%% Do not edit unless you really know what you are doing.
\documentclass[twoside,headsepline=on, footsepline=on]{scrreprt}
\PassOptionsToPackage{natbib=true}{biblatex}
\usepackage[T1]{fontenc}
\usepackage[utf8]{inputenc}
\usepackage[letterpaper]{geometry}
\geometry{verbose,tmargin=4cm,bmargin=2cm,lmargin=2cm,headsep=1.5cm}
\pagestyle{plain}
\setcounter{secnumdepth}{3}
\setcounter{tocdepth}{3}
\setlength{\parskip}{\medskipamount}
\setlength{\parindent}{0pt}
\usepackage{array}
\usepackage{textcomp}
\usepackage{url}
\usepackage{pdfpages}
\usepackage{graphicx}

Why the new doc uses latin9 rather than utf8 is the issue.

These are what's in Documents -> Settings -> Preamble:

\date{}
\usepackage{mathpazo,amssymb}
\usepackage{graphicx,relsize}
\usepackage{scrlayer-scrpage}
\usepackage{xcolor,colortbl}
\definecolor{lightgray}{gray}{0.8}
\pagestyle{scrheadings}
\lehead{Biological Evaluation}
\rohead{Biological Evaluation}
\refoot{Applied Ecosystem Services, LLC}
\lofoot{Applied Ecosystem Services, LLC}
\automark*{section}

Regards,

Rich
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Re: Bibliography not shown in compiled PDF

2023-12-05 Thread Rich Shepard

On Tue, 5 Dec 2023, Herbert Voss wrote:


That is the user preamble! It _must_ be inserted by you.


Herbert,

Well, it's not in Documents -> Settings -> Preamble and I had no reason add
it and was unaware that it was in the .tex file.


It was a wrong font encoding° LyX inserts
\usepackage[T1]{fontenc}
\usepackage[latin9]{luainputenc}
which is completly nonsense if using lualatex. You'll get
unknown commands and no bibliography.


I don't use lualatex; only pdflatex. Somehow lyx inserted those two packages
because I had no reason to do so.

Regards,

Rich
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Re: Bibliography not shown in compiled PDF

2023-12-05 Thread Rich Shepard

On Tue, 5 Dec 2023, Herbert Voss wrote:


as I already  wrote:
- enable the "Use non TeX fonts"
- add \usepackage{avant}  in the document->setting->preamble
- add also  \usepackage[scaled]{beramono}
   or \usepackage{courier}   which is _not_ a nice monofont.


Herbert,

Okay. But I want to understand how the wrong package got into the preamble
when it was never there before now.

And how is the font setting preventing the bibliography from not being
included in the report and its ToC?

Regards,

Rich
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Re: Bibliography not shown in compiled PDF

2023-12-05 Thread Rich Shepard

On Tue, 5 Dec 2023, Steve Litt wrote:


Start by using grep on your LyX file. This might give you some ideas
about where it was specified.


SteveT,

It's in the default 'usepackage{}' group at the top of the file. But that
does not tell me how it got there nor how to remove it from all my docs
since it's not in the Document -> Settings -> Preamble.

Regards,

Rich
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Re: Bibliography not shown in compiled PDF

2023-12-05 Thread Rich Shepard

On Tue, 5 Dec 2023, Herbert Voss wrote:


that should be ok, but LyX used
\usepackage[latin9]{luainputenc}
which is for years deprecated. You can still use palatino with
\usepackage{mathpazo}
in the documents preamble and leave all entries in the fonts
settings for standard with enabled "no TeX fonts"


Herbert,

I've no idea where that package was specified, not in the preamble that I
can edit (attached) and not in any previous doc.

How can I remove it from all documents?

Thanks,

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Re: Bibliography not shown in compiled PDF

2023-12-05 Thread Rich Shepard

On Tue, 5 Dec 2023, Rich Shepard wrote:


Attached is the font settings I've used for years,


Forgot to attach it.

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Re: Bibliography not shown in compiled PDF

2023-12-05 Thread Rich Shepard

On Tue, 5 Dec 2023, Herbert Voss wrote:


you have the font setting for pdflatex. You should enable the button "no
TeX fonts" on top of document->setting->fonts. Otherwise you'll get the
latin9 encoding with luainputenc, which is rubbish ...

For the fonts use a serif font, eg Libertinus Serif, SF Libertinus Sans
and monofont Anonmyous Pro with a 90% scaling

With this modifications it runs successfully for me.


Herbert,

I don't understand. Attached is the font settings I've used for years,
including all recent docs in KOMA-Script Book and Report classes with
bibliographies, TeXLive2023, and LyX-2.3.6.1.

When I invoke "no TeX fonts" I cannot set the body type using Palatino, my
default since 1997.

Puzzled,

Rich
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Re: Bibliography not shown in compiled PDF

2023-12-05 Thread Rich Shepard

On Tue, 5 Dec 2023, Pavel Sanda wrote:


Also, when I change the document class to e.g. book, the bibliography
works (probably switches to biblatex in backgrounds).


Pavel,

I changed mwe.lyx to KOMA-scrupt book class. Still no bibliography in the
document or ToC.

Running TeXLive2023 here.

Regards,

Rich
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Re: Bibliography not shown in compiled PDF

2023-12-05 Thread Rich Shepard

On Tue, 5 Dec 2023, Pavel Sanda wrote:


When I try to compile it I see errors complaining that I do not have 'biber'.
Do you have it installed?


Pavel,

Yes, biber is the processor used here. See attached.


Also, when I change the document class to e.g. book, the bibliography
works (probably switches to biblatex in backgrounds).


Well, biblatex is the default in all my report and book classes documents.

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Bibliography not shown in compiled PDF

2023-12-05 Thread Rich Shepard

On Tue, 5 Dec 2023, Rich Shepard wrote:


Stay tuned ...


Pavel, et al.:

Attached are mwe.lyx and mwebib.bib (both with 2 references.) The mwe.lyx
compiles without error but there's no bibliography.

Regards,

Rich#LyX 2.3 created this file. For more info see http://www.lyx.org/
\lyxformat 544
\begin_document
\begin_header
\save_transient_properties true
\origin unavailable
\textclass scrreprt
\begin_preamble
\date{}
\usepackage{mathpazo,amssymb}
\usepackage{graphicx,relsize}
\usepackage{scrlayer-scrpage}
\pagestyle{scrheadings}
\usepackage{gensymb,textcomp}
\usepackage{lipsum}
\end_preamble
\use_default_options false
\maintain_unincluded_children false
\language english
\language_package default
\inputencoding auto
\fontencoding global
\font_roman "palatino" "default"
\font_sans "avant" "default"
\font_typewriter "courier" "default"
\font_math "auto" "auto"
\font_default_family rmdefault
\use_non_tex_fonts false
\font_sc true
\font_osf false
\font_sf_scale 100 100
\font_tt_scale 100 100
\use_microtype false
\use_dash_ligatures false
\graphics default
\default_output_format default
\output_sync 0
\bibtex_command biber mergedate=compact
\index_command default
\paperfontsize 11
\spacing single
\use_hyperref false
\papersize executivepaper
\use_geometry true
\use_package amsmath 1
\use_package amssymb 1
\use_package cancel 0
\use_package esint 0
\use_package mathdots 1
\use_package mathtools 0
\use_package mhchem 1
\use_package stackrel 0
\use_package stmaryrd 0
\use_package undertilde 0
\cite_engine biblatex-natbib
\cite_engine_type authoryear
\biblatex_bibstyle authoryear
\biblatex_citestyle authoryear
\use_bibtopic false
\use_indices false
\paperorientation portrait
\suppress_date false
\justification true
\use_refstyle 0
\use_minted 0
\index Index
\shortcut idx
\color #008000
\end_index
\paperwidth 6in
\paperheight 9in
\leftmargin 0.75in
\topmargin 0.5in
\rightmargin 0.5in
\bottommargin 0.5in
\secnumdepth 3
\tocdepth 3
\paragraph_separation indent
\paragraph_indentation default
\is_math_indent 0
\math_numbering_side default
\quotes_style english
\dynamic_quotes 0
\papercolumns 1
\papersides 2
\paperpagestyle default
\tracking_changes false
\output_changes false
\html_math_output 0
\html_css_as_file 0
\html_be_strict false
\end_header

\begin_body

\begin_layout Title
Title
\end_layout

\begin_layout Author
Author
\end_layout

\begin_layout Date
\begin_inset ERT
status open

\begin_layout Plain Layout


\backslash
today
\end_layout

\end_inset


\end_layout

\begin_layout Standard
\begin_inset CommandInset toc
LatexCommand tableofcontents

\end_inset


\end_layout

\begin_layout Standard
\begin_inset FloatList figure

\end_inset


\end_layout

\begin_layout Chapter
Introduction
\end_layout

\begin_layout Standard
\begin_inset ERT
status open

\begin_layout Plain Layout


\backslash
lipsum[1]
\end_layout

\end_inset


\end_layout

\begin_layout Chapter
Distribution
\end_layout

\begin_layout Standard
Some more text
\end_layout

\begin_layout Section
Idaho
\end_layout

\begin_layout Standard
\begin_inset ERT
status open

\begin_layout Plain Layout


\backslash
lipsum[2]
\end_layout

\end_inset


\begin_inset CommandInset citation
LatexCommand cite
key "Adams1997"
literal "true"

\end_inset


\end_layout

\begin_layout Section
Oregon
\end_layout

\begin_layout Standard
\begin_inset ERT
status open

\begin_layout Plain Layout


\backslash
lipsum[1]
\end_layout

\end_inset


\begin_inset CommandInset citation
LatexCommand citep
key "Czarnomski2001"
literal "true"

\end_inset


\end_layout

\begin_layout Standard
\begin_inset CommandInset bibtex
LatexCommand bibtex
btprint "btPrintCited"
bibfiles "mwebib"
options "bibtotoc"

\end_inset


\end_layout

\end_body
\end_document
% Encoding: UTF-8
@comment{x-kbibtex-encoding=utf-8}

@comment{ This file was created with JabRef 2.9.2.
}

@InProceedings{Adams1997,
  author= {Adams, S.B. and Bjornn, T.C.},
  booktitle = {{Friends of the Bull Trout Conference Proceedings}},
  title = {{Bull trout distributions related to temperature regimes in four 
central Idaho straams}},
  year  = {1997},
  editor= {Mackay, W.C. and Brewin, M.K. and Monita, M.},
  pages = {371--380},
  abstract  = {Bull trout, Salvelinus confluentus, distributions and water 
temperature regimes were studied in four streams of the Weiser River basin, 
Idaho, in 1992 and 1993. Bull trout occurred at elevations ranging from 1,472 m 
to 2,182 m and densities up to 9.5 fish per 100 m^2. Bull trout were  sympatric 
with rainbos trout, Orchorynchus mykiss, in all streams and with brook trout, 
S. fontinalis, and brook trout x bull trout hybrids in two streams.

Summer temperatures were continuously recorded in 1992 and 1993. The 1993 
temperature monitoring sites were at the upstream distrobutionlimits of 
juvenile bul

Re: Outline pane FUBAR

2023-12-05 Thread Rich Shepard

On Tue, 5 Dec 2023, Rich Shepard wrote:


This is a bibliography issue and my jabrefbib.bib file is 2.2Mb large; too
big to send.


Now there are only 3 citations in the text. I'll make a MWE using package
lipsum with those three citations and attach the bibtex entries for each.

Stay tuned ...

Regards,

Rich
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Re: Outline pane FUBAR

2023-12-05 Thread Rich Shepard

On Tue, 5 Dec 2023, Pavel Sanda wrote:


Given that this normally works for me, MWE would be indeed useful..


Pavel,

This is a bibliography issue and my jabrefbib.bib file is 2.2Mb large; too
big to send.

Might there be a clue in the .tex file? There are no errors when I compile
with pdflatex so there's no error file in /tmp/lyx_tmpdir.PbbUwId27698 or
the three lyx_tempbuf? subdirectories.

Regards,

Rich
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Re: Outline pane FUBAR

2023-12-05 Thread Rich Shepard

On Tue, 5 Dec 2023, Pavel Sanda wrote:


I can't see this. Can you report more details about your setup (Qt
version, LyX version, OS type)?


Pavel,

In the process of creating a MWE I found the problem: somehow the
bibliography was moved from the end to a place in the second chapter.
Correcting this fixed the problem of the outline tab display.

However, I still need help in learning why the bibliography does not appear
at the end of the compiled (pdflatex) document nor in the ToC.

Have you any thoughts on this?

Regards,

Rich
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Re: Search and replace in selection only

2023-12-05 Thread Rich Shepard

On Tue, 5 Dec 2023, Folsk Pratima wrote:


The subject. LyX Version 2.3.7. Any luck in newer versions?


Have not before had any issues with current version 2.3.6.1.

Thanks,

Rich


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Outline pane FUBAR

2023-12-04 Thread Rich Shepard

I used the up and down arrows at the bottom of the outline pane window to
re-order sections in the report doc. Now only one is displayed rather than
all four sections.

If I use the down arrow with that section highlighted the others show up in
order, but now the first one is the last one.

Please teach me how to view all four secions in alphabetic order.

TIA,

Rich
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Bibliography not shown in compiled PDF

2023-12-04 Thread Rich Shepard

I've added the bibliography at the end of the document and specified it's to
be included in the ToC. It appears in neither place.

What might I be missing?

TIA,

Rich
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