Re: [Mzmine-devel] Mzmine unexpected format error

2012-05-14 Thread Edward Kaye
Tomas, Thank you very much for your swift reply, converting the RAW files to mzXML works fine, thanks again. Regards, Edward On Mon, May 14, 2012 at 11:58 AM, Tomas Pluskal wrote: > Hi Edward, > > It seems there is a great variety in the contents of the scan filter > line provided by Thermo

Re: [Mzmine-devel] Mzmine unexpected format error

2012-05-14 Thread Tomas Pluskal
Hi Edward, It seems there is a great variety in the contents of the scan filter line provided by Thermo instruments (in your case "- c APCI sid = 5.00 Q1MS [200.000-600.000]"). I adjusted the MZmine code to accommodate this, so you will be able to open the raw files using the next MZmine versio

[Mzmine-devel] Mzmine unexpected format error

2012-05-14 Thread Edward Kaye
To whom it may concern, I have an error message appear when I try to import my data: java.io.IOException:Unexpected format: SCAN FILTER : - c APCI sid = 5.00 Q1MS [200.000-600.000] (XcaliburRawFileReadTask,java:223) Is there any way to fix this problem so that I may use mzmine? Regards, Edward