Re: [Mzmine-devel] Recent commits

2014-12-17 Thread Gauthier Boaglio
Hi Tomas, I get all this (it sticks with what I had suspected). And I agree about keeping development side simple. About your last suggestion, well, I'm not sure. It is not such painful for the user to select files correctly for the very first step the SetupDialog rather than from selection tr

Re: [Mzmine-devel] Recent commits

2014-12-17 Thread Tomas Pluskal
Hi Gauthier, I really didn't like the previous design of batch mode, for several reasons: 1) Some modules are simply not supposed to take the previous module's output as their input. A typical example is the alignment module, which may require a combined output of several previous steps. 2) In

Re: [Mzmine-devel] Recent commits

2014-12-16 Thread Gauthier Boaglio
Hi Tomas, I understand that this is important to have it work this way for better compatibility in Headless Mode, but wouldn't it be more practical to have the choice of using pattern or using the result of the previous step (as it used to be), at least in GUI mode? That was very handy that wa

Re: [Mzmine-devel] Recent commits

2014-12-15 Thread Tomas Pluskal
Thomas From: TFRD (Thomas Franck Dyrlund) [mailto:t...@steno.dk] Sent: 15. december 2014 08:24 To: Developer discussion Subject: Re: [Mzmine-devel] Recent commits Hi Tomas The changes to the PeakListParameter (and possibly also the RawDataFileParameter?) causes the previous selected peak list

Re: [Mzmine-devel] Recent commits

2014-12-15 Thread TFRD (Thomas Franck Dyrlund)
: TFRD (Thomas Franck Dyrlund) [mailto:t...@steno.dk] Sent: 15. december 2014 08:24 To: Developer discussion Subject: Re: [Mzmine-devel] Recent commits Hi Tomas The changes to the PeakListParameter (and possibly also the RawDataFileParameter?) causes the previous selected peak list to be

Re: [Mzmine-devel] Recent commits

2014-12-14 Thread TFRD (Thomas Franck Dyrlund)
Hi Tomas The changes to the PeakListParameter (and possibly also the RawDataFileParameter?) causes the previous selected peak list to be remembered and selected when opening a MZmine instance. This means that I have a peak list available under the parameters even though I don't have any peak