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I am looking for a solution to get around the limit of 20 input variables
in nonmem.
The message you get with more than 20 variables in $INPUT is this:
16 $INPUT: NO. OF DATA ITEMS EXCEEDS 20.
STOP 4 statement executed
I did not find anything in the archives or on the Web. I recall having
If you are not looking for workarounds, you'll need to wait for Nonmem
VII to be released.
Regards,
Katya
-
Ekaterina Gibiansky
Senior Director, PKPD, Modeling Simulation
ICON Development Solutions
ekaterina.gibian...@iconplc.com
Andreas,You are correct that there isn't an easy way to change the limit of 20 data itemsBut, I know of 2 possible solutions:1. The official way. There is a way to do continuation lines in nonmem data sets, documentation below. But I have found this pretty cumbersome.2. The hack. When I've needed
Look in your NONMEM html\cont.htm.
The CONT data item lets you specify additional input records which can
be continued to allow more than 20 data items.
Here is a description in more detail.
http://www.cognigencorp.com/nonmem/nm/99aug272005.html
I found this by searching with Google for
Dear Andreas,
Isn't the limit you're referring to the maximum amount of etas/thetas, these
can be adjusted (see: http://www.icondevsolutions.com/nonmem_tip20.htm )
As far as I known the amount of data items can not be adjusted. If some of them
are not in use, you can use the DROP data item.
Dear Andreas,
Before NM VII, PsN is a solution.
[create_cont_data.bat] is used to generate cont data set.
[execute -wrap_data modelfile] will run automatically.
But it depends on the structures of model and data set. If it doesn't work,
maybe we should add cont item manually.
Hi All,
PsN does this automatically when using the '-wrap_data' option of the
'execute' command. See
http://psn.sourceforge.net/PDF_docs/common_options_defaults_versions_psn.pdf
for more details.
Best regards,
Andy
Andrew Hooker, Ph.D.
Associate Professor of Pharmacometrics
Div. of
Andreas,
PsN has functionality for automatically applying the CONT-data-item
approach mentioned by Mark and Nick.
To run your model in nonmem with more than 20 input variables, you would
simply type:
execute --wrap_data run1.mod
In a subdirectory PsN will create a new dataset and model file
Andreas,
Some months ago I spent a few hours investigating this same problem. Below are
my notes. Currently I use the last approach (which is actually a workaround,
sorry...), that will hopefully be redundant when NM7 arrives,
best regards,
Ron
approaches for using more covariates in
Hi Ron,
Thanks for your summary.
In my case, it always shows an error that DV is positive and MDV is 1.
Maybe this indicates that in NMVI a new rule to check DV and MDV have been
added. The problem could be solved when CONT is 1 and MDV is 1, DV is set to
'.'.
Best regards,
Guangli
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