Re: [Numpy-discussion] building numpy locally but get error: undefined symbol: zgesdd_

2008-09-18 Thread David Cournapeau
Francis wrote: Thank you for your effort. I guess garnumpy reflects the idea in this Pylab discussion: http://www.scipy.org/PyLab Again I get errors in libblas/lapack related to gfortran (local variable problems). I replaced the libblas.a and the liblaplack.a by the ones of sage. And started

Re: [Numpy-discussion] building numpy locally but get error: undefined symbol: zgesdd_

2008-09-18 Thread David Cournapeau
David Cournapeau wrote: If you install blas/lapack from sage, it kind of defeats the whole purpose of garnumpy. The goal is to have a unified set of options to build. It is likely that sage uses different options than the ones from garnumpy. If you use garnumpy, you should use it for

Re: [Numpy-discussion] building numpy locally but get error: undefined symbol: zgesdd_

2008-09-17 Thread Francis
On Sep 17, 2:37 am, David Cournapeau [EMAIL PROTECTED] wrote: Francis wrote: To be frank, I am bit of noob, but not completely. I use the gfortran make.inc to build lapack. The make.inc file to build and install atlas is using gfortran.  I used the --fcompiler=gfortran flag. I don't

Re: [Numpy-discussion] building numpy locally but get error: undefined symbol: zgesdd_

2008-09-17 Thread David Cournapeau
Francis wrote: I can't open rpm files so I opened numpy with archive manager and extracted Numpy to site-packages. Can't you ask your admin to install rpm packages ? Uncompressing the rpm and putting them into random places is unlikely to work. Unfortunately importing numpy results in

Re: [Numpy-discussion] building numpy locally but get error: undefined symbol: zgesdd_

2008-09-17 Thread Francis
In general the IT dep. don't want changes since changes require weeks of testing to make sure that existing applications are not conflicting, etc. I am not sure they would fulfill my request. Especially since it has no priority at all. I am installing Sage math now. Although I would like to avoid

Re: [Numpy-discussion] building numpy locally but get error: undefined symbol: zgesdd_

2008-09-17 Thread David Cournapeau
Francis wrote: In general the IT dep. don't want changes since changes require weeks of testing to make sure that existing applications are not conflicting, etc. I feel your pain. In such case, I ask if it is possible to ask for vmware installation: nowadays, cpu are fast enough such as

Re: [Numpy-discussion] building numpy locally but get error: undefined symbol: zgesdd_

2008-09-17 Thread David Cournapeau
On Wed, Sep 17, 2008 at 7:13 PM, Francis [EMAIL PROTECTED] wrote: In general the IT dep. don't want changes since changes require weeks of testing to make sure that existing applications are not conflicting, etc. I am not sure they would fulfill my request. Especially since it has no priority

Re: [Numpy-discussion] building numpy locally but get error: undefined symbol: zgesdd_

2008-09-16 Thread David Cournapeau
Francis Drossaert wrote: Hi everybody, I am trying to install python2.5/scipy/numpy/sympy/matplotlib locally, because of various reasons. I am not root. Do you really need python 2.5 ? By building your own python, you are forcing yourself to build every package you will need for python,

Re: [Numpy-discussion] building numpy locally but get error: undefined symbol: zgesdd_

2008-09-16 Thread Francis
Do you really need python 2.5 ? By building your own python, you are forcing yourself to build every package you will need for python, including the dependencies. For matplotlib, it will be painful. Python 2.4 is enough (incidentally, I have to use Centos 5 at some place, on the same

Re: [Numpy-discussion] building numpy locally but get error: undefined symbol: zgesdd_

2008-09-16 Thread David Cournapeau
Francis wrote: I don't really need Python2.5. Python2.4 is actually available on the network but I think I will run into problems using the network one and try using local libraries. No, it is perfectly supported (I do it all the time, even on my own machines where I have root rights). You

Re: [Numpy-discussion] building numpy locally but get error: undefined symbol: zgesdd_

2008-09-16 Thread Francis
On 16 Sep, 10:18, David Cournapeau [EMAIL PROTECTED] wrote: Francis wrote: I don't really need Python2.5. Python2.4 is actually available on the network but I think I will run into problems using the network one and try using local libraries. No, it is perfectly supported (I do it all

Re: [Numpy-discussion] building numpy locally but get error: undefined symbol: zgesdd_

2008-09-16 Thread David Cournapeau
Francis wrote: ATLAS version 3.8.2 built by francisd on Mon Sep 15 15:20:08 BST 2008: UNAME: Linux red-67 2.6.18-92.el5 #1 SMP Tue Jun 10 18:51:06 EDT 2008 x86_64 x86_64 x86_64 GNU/Linux INSTFLG : -1 0 -a 1 ARCHDEFS : -DATL_OS_Linux -DATL_ARCH_PIII -DATL_CPUMHZ=2500 -

Re: [Numpy-discussion] building numpy locally but get error: undefined symbol: zgesdd_

2008-09-16 Thread Francis
You are right. I have recompiled everything with gfortran, but now I get the following error when I try to import numpy: undefined symbol: _gfortran_concat_string. I have build a while ago sage-math (where everything is build locally), but I delete it since it was over 1GB and I am only

Re: [Numpy-discussion] building numpy locally but get error: undefined symbol: zgesdd_

2008-09-16 Thread David Cournapeau
Francis wrote: You are right. I have recompiled everything with gfortran, but now I get the following error when I try to import numpy: undefined symbol: _gfortran_concat_string. This means something at some point was not built with gfortran, or that you did not use gfortran to build numpy.

Re: [Numpy-discussion] building numpy locally but get error: undefined symbol: zgesdd_

2008-09-16 Thread Steve Lianoglou
Hi, On Sep 16, 2008, at 11:13 AM, David Cournapeau wrote: Yes, I think they package everything by themselves. I am starting to think that we should do the same for blas/lapack, that's also how R does it by default, and I am so tired of seeing the same errors coming again and again. I

Re: [Numpy-discussion] building numpy locally but get error: undefined symbol: zgesdd_

2008-09-16 Thread Francis
On 16 Sep, 16:13, David Cournapeau [EMAIL PROTECTED] wrote: Francis wrote: You are right. I have recompiled everything with gfortran, but now I get the following error when I try to import numpy: undefined symbol: _gfortran_concat_string. This means something at some point was not built

Re: [Numpy-discussion] building numpy locally but get error: undefined symbol: zgesdd_

2008-09-16 Thread David Cournapeau
Francis wrote: To be frank, I am bit of noob, but not completely. I use the gfortran make.inc to build lapack. The make.inc file to build and install atlas is using gfortran. I used the --fcompiler=gfortran flag. I don't think there is much else I can do. Yes there is :) You should use

Re: [Numpy-discussion] building numpy locally but get error: undefined symbol: zgesdd_

2008-09-16 Thread David Cournapeau
David Cournapeau wrote: I am really sorry for all this trouble. The last solution you could try, with a bit old packages is my own repository, with Centos packages: http://download.opensuse.org/repositories/home:/ashigabou/CentOS_5/ I could update numpy to a recent one (1.1.1), but