On 12/23/18 2:52 PM, Spencer Trinh wrote:
> output=pybel.Outputfile('svg',filename='testsvg.svg',opt={'u':None,'C':None})
>
> for name,mol in mols.items():
>
> mol.removeh()
>
> mol.title=name
>
> output.write(mol)
>
> output.close()
From
(Repost with a catchy Subject)
Noel, Geoff,
this sounds like a bug:
On 12/23/18 2:52 PM, Spencer Trinh wrote:
>
> output=pybel.Outputfile('svg',filename='testsvg.svg',opt={'u':None,'C':None})
> for name,mol in mols.items():
> mol.removeh()
> mol.title=name
> output.write(mol)
> output.close()
> My second question is regarding running python programs in command line,
> have you ever tried to run the python program that imports pybel from inside
> a batch file? For me this throws an error "ModuleNotFoundError: No module
> named pybel".
One way or another, the environment is different.
Noel, Geoff,
this sounds like a bug:
On 12/23/18 2:52 PM, Spencer Trinh wrote:
>
> output=pybel.Outputfile('svg',filename='testsvg.svg',opt={'u':None,'C':None})
> for name,mol in mols.items():
> mol.removeh()
> mol.title=name
> output.write(mol)
> output.close()
> ... The svg file itself has
The svg-format has an option to omit the XML declaration, namely ’x’. So try
with opt={’u’:None, ’C’:None, ’x’:None}
I haven’t had time to test though...
> 26 dec. 2018 kl. 21:14 skrev Dimitri Maziuk via OpenBabel-discuss
> :
>
> (Repost with a catchy Subject)
>
> Noel, Geoff,
>
> this
PS I haven't looked at SVG specs too closely: anyone knows what is does
with multiple "..." elements in the same file?
--
Dimitri Maziuk
Programmer/sysadmin
BioMagResBank, UW-Madison -- http://www.bmrb.wisc.edu
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On 12/26/18 4:23 PM, Fredrik Wallner wrote:
> The svg-format has an option to omit the XML declaration, namely ’x’. So try
> with opt={’u’:None, ’C’:None, ’x’:None}
> I haven’t had time to test though...
Outputfile shouldn't need an extra option for writing out valid files. A
valid XML file
i played around with the xml file and indeed, if you remove the repeated
declarations and shift the x-axis of the other structures around relative
to the first, then the added structures can be seen, otherwise they overlap
each other and only one structure is viewable.
Vào Th 4, 26 thg 12, 2018
