[Open Babel] SDF to PDB

2014-03-18 Thread Daniel Rodriguez Elvira
I am trying to convert a SDF file to PDB using Babel, but it just won't work. I am just getting started on using Linux and into the docking world. So a step by step explanation would be most appreciated. regards, Dennis

Re: [Open Babel] SDF to PDB

2014-03-18 Thread Craig James
Hi Daniel, Can you be more specific than just won't work? Like, it won't install? It won't run? It runs but doesn't give the right answer? It runs but gives an error message? If you can tell us exactly what you're doing, what happened, and what you expected to happen (and attach relevant

Re: [Open Babel] SDF to PDB

2014-03-18 Thread Daniel Rodriguez Elvira
Craig, You are right, I should be more specific, sorry. I installed the apt just fine, but when I type babel example.sdf example.pdb the following message appears: Cannot open CID_969516.sdf 0 molecules converted 1 errors I tried it both by having the file in my flash-drive and my

Re: [Open Babel] SDF to PDB

2014-03-18 Thread Craig James
On Tue, Mar 18, 2014 at 9:19 AM, Daniel Rodriguez Elvira d_r_elv...@hotmail.com wrote: Craig, You are right, I should be more specific, sorry. I installed the apt just fine, but when I type babel example.sdf example.pdb the following message appears: Cannot open CID_969516.sdf 0