Did anybody implement AQL with a LL parser framework?

2012-01-05 Thread Shinji KOBAYASHI
P.S.
I leaned much from Andrew W. Appel, the chapter 3 of "Modern Compiler
Implementation in ML"

2012/1/5 Shinji KOBAYASHI :
> Hi Seref,
>
> Left recursive rule is theoretically rewrite to equivalent right recursive.
> In ADL grammar, cADL has left recursive rule that cannot be parsed by LL,
> so I converted them to right recursive rules.
> For example of left recursive to explain(shorten for convenience)
>
> arithmetic_expression:
> ? arithmetic_leaf
> | arithmetic_node
>
> arithmetic_node:
> ?arithmetic_expression '+' arithmetic_leaf
> |...
>
> arithmetic_leaf:
> ?(an arithmetic element)
>
> I converted this grammar to this right recursive rule.
>
> arithmetic_expression:
> ? arithmetic_leaf
> | arithmetic_node
>
> arithmetic_node:
> ?arithmetic_leaf ?'+' arithmetic_expression
> |...
>
> These conversions were the most tough points.
> I wish I could help you.
>
> Regards,
> Shinji
>
> 2012/1/5 Seref Arikan :
>> Thanks Shinji,
>> In general, Antlr has some convenient features, infinite lookahead being one
>> of them. I've quickly checked, and Treetop does not seem to support left
>> recursion either. So you must have modified the grammar to make it work.
>> I'm referring to grammar rules such as
>> A : A | B;
>>
>> Tom made the point earlier. At one point it would be good to unify various
>> AQL implementation experiences. I'll check out the papers.
>>
>> Best regards
>> Seref
>>
>>
>>
>> On Thu, Jan 5, 2012 at 2:21 AM, Shinji KOBAYASHI  wrote:
>>>
>>> Hi Seref,
>>>
>>> My ADL parser does not include AQL parsing.
>>> I used Treetop, which is an Ruby implementation of PEG/Packrat parsing
>>> algorithm,
>>> not LL/LR. PEG/Packrat parser algorithm was described in this paper.
>>> http://bford.info/pub/lang/packrat-icfp02/
>>>
>>> Antlr is an implementation of PEG parser by LL techniques. I do not
>>> know Antlr so much.
>>>
>>> Packrat parser does not need to separate scanner/parser/lexer and is
>>> capable to
>>> infinite look ahead recursive.
>>>
>>> I do not know why are you parsing AQL, but this proceeding about querying
>>> EHR
>>> by archetype might be helpful for your research.
>>> http://web-ext.u-aizu.ac.jp/labs/sw-db/7108/71080109.pdf
>>>
>>> Best regards,
>>> Shinji
>>>
>>> 2012/1/5 Seref Arikan :
>>> > Greetings,
>>> > The AQL grammar from the wiki has direct and indirect left recursion.
>>> > Which
>>> > means without changes in the grammar, LL parser generators (both JavaCC
>>> > and
>>> > Anltr) can't generate parsers for this grammar.
>>> >
>>> > I'm curious if anybody has refactored this grammar for LL parser
>>> > generators.
>>> > Shinji? Your latest release includes an AQL parser does not it? Could
>>> > you
>>> > please share your method? I can always look at the code, but you'd
>>> > probably
>>> > save me time :)
>>> >
>>> > I'm interested in experiences of others too.
>>> >
>>> >
>>> > Kind regards
>>> > Seref
>>> >
>>> >
>>> > ___
>>> > openEHR-technical mailing list
>>> > openEHR-technical at openehr.org
>>> > http://lists.chime.ucl.ac.uk/mailman/listinfo/openehr-technical
>>> >
>>> ___
>>> openEHR-technical mailing list
>>> openEHR-technical at openehr.org
>>> http://lists.chime.ucl.ac.uk/mailman/listinfo/openehr-technical
>>
>>
>>
>> ___
>> openEHR-technical mailing list
>> openEHR-technical at openehr.org
>> http://lists.chime.ucl.ac.uk/mailman/listinfo/openehr-technical
>>




Did anybody implement AQL with a LL parser framework?

2012-01-05 Thread Shinji KOBAYASHI
Hi Seref,

Left recursive rule is theoretically rewrite to equivalent right recursive.
In ADL grammar, cADL has left recursive rule that cannot be parsed by LL,
so I converted them to right recursive rules.
For example of left recursive to explain(shorten for convenience)

arithmetic_expression:
   arithmetic_leaf
| arithmetic_node

arithmetic_node:
  arithmetic_expression '+' arithmetic_leaf
|...

arithmetic_leaf:
 (an arithmetic element)

I converted this grammar to this right recursive rule.

arithmetic_expression:
   arithmetic_leaf
| arithmetic_node

arithmetic_node:
  arithmetic_leaf  '+' arithmetic_expression
|...

These conversions were the most tough points.
I wish I could help you.

Regards,
Shinji

2012/1/5 Seref Arikan :
> Thanks Shinji,
> In general, Antlr has some convenient features, infinite lookahead being one
> of them. I've quickly checked, and Treetop does not seem to support left
> recursion either. So you must have modified the grammar to make it work.
> I'm referring to grammar rules such as
> A : A | B;
>
> Tom made the point earlier. At one point it would be good to unify various
> AQL implementation experiences. I'll check out the papers.
>
> Best regards
> Seref
>
>
>
> On Thu, Jan 5, 2012 at 2:21 AM, Shinji KOBAYASHI  wrote:
>>
>> Hi Seref,
>>
>> My ADL parser does not include AQL parsing.
>> I used Treetop, which is an Ruby implementation of PEG/Packrat parsing
>> algorithm,
>> not LL/LR. PEG/Packrat parser algorithm was described in this paper.
>> http://bford.info/pub/lang/packrat-icfp02/
>>
>> Antlr is an implementation of PEG parser by LL techniques. I do not
>> know Antlr so much.
>>
>> Packrat parser does not need to separate scanner/parser/lexer and is
>> capable to
>> infinite look ahead recursive.
>>
>> I do not know why are you parsing AQL, but this proceeding about querying
>> EHR
>> by archetype might be helpful for your research.
>> http://web-ext.u-aizu.ac.jp/labs/sw-db/7108/71080109.pdf
>>
>> Best regards,
>> Shinji
>>
>> 2012/1/5 Seref Arikan :
>> > Greetings,
>> > The AQL grammar from the wiki has direct and indirect left recursion.
>> > Which
>> > means without changes in the grammar, LL parser generators (both JavaCC
>> > and
>> > Anltr) can't generate parsers for this grammar.
>> >
>> > I'm curious if anybody has refactored this grammar for LL parser
>> > generators.
>> > Shinji? Your latest release includes an AQL parser does not it? Could
>> > you
>> > please share your method? I can always look at the code, but you'd
>> > probably
>> > save me time :)
>> >
>> > I'm interested in experiences of others too.
>> >
>> >
>> > Kind regards
>> > Seref
>> >
>> >
>> > ___
>> > openEHR-technical mailing list
>> > openEHR-technical at openehr.org
>> > http://lists.chime.ucl.ac.uk/mailman/listinfo/openehr-technical
>> >
>> ___
>> openEHR-technical mailing list
>> openEHR-technical at openehr.org
>> http://lists.chime.ucl.ac.uk/mailman/listinfo/openehr-technical
>
>
>
> ___
> openEHR-technical mailing list
> openEHR-technical at openehr.org
> http://lists.chime.ucl.ac.uk/mailman/listinfo/openehr-technical
>



Outcomes & conclusions of the openEHR course in spanish (& ideas for the future)

2012-01-05 Thread David Moner
nk?
>
>
> --
> Kind regards,
> Ing. Pablo Pazos Guti?rrez
> LinkedIn: http://uy.linkedin.com/in/pablopazosgutierrez
> Blog: http://informatica-medica.blogspot.com/
> Twitter: http://twitter.com/ppazos <http://twitter.com/ppazos>
>
> ___
> openEHR-clinical mailing list
> openEHR-clinical at openehr.org
> http://lists.chime.ucl.ac.uk/mailman/listinfo/openehr-clinical
>



-- 
David Moner Cano
Grupo de Inform?tica Biom?dica - IBIME
Instituto ITACA
http://www.ibime.upv.es

Universidad Polit?cnica de Valencia (UPV)
Camino de Vera, s/n, Edificio G-8, Acceso B, 3? planta
Valencia ? 46022 (Espa?a)
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Outcomes & conclusions of the openEHR course in spanish (& ideas for the future)

2012-01-05 Thread Ian McNicoll
Hi Pablo,

I think we could probably agree the core training requirements quite
quickly but the real problem is how any certification process could be
policed and funded. Who trains the trainers, who checks that they are
delivering the core content? In Ocean we certainly have a set of core
training materials but these are adapted and amended for every
specific customer - the requirements for a clinical audience is
somewhat different from a technical audience or mixed audience and
time avaialble differs half-day, one day, three day?? ...  and again
for a vendor client vs. a national organisation. If we have 'certified
training', to what extent does that prevent us from adapting content
for specific clients and circumstances - I know this is the case for
some UK training certification processes. it is one thing to specify
the core requirements but quite another to ensure that these are being
properly adhered to.

I think the only suggestion I would have for your tool chain diagram
is that with ADL1.5 I think we will have the same tool for archetypes
and semantic templates i.e non-GUI. We will also need mapping tools
for mesage integration and requirements integration and an AQL editing
tool.

Ian

Dr Ian McNicoll
office +44 (0)1536 414 994
fax +44 (0)1536 516317
mobile +44 (0)775 209 7859
skype ianmcnicoll
ian.mcnicoll at oceaninformatics.com

Clinical Modelling Consultant,?Ocean Informatics, UK
Director/Clinical Knowledge Editor openEHR Foundation ?www.openehr.org/knowledge
Honorary Senior Research Associate, CHIME, UCL
SCIMP Working Group, NHS Scotland
BCS Primary Health Care ?www.phcsg.org



On 5 January 2012 15:38, pablo pazos  wrote:
> Hi Shinji,
>
> I think (hope) that trainers could discuss and agree on the core topics of
> an standard openEHR course, and then create an upper level layer to localize
> this core topics to the student's profile and the depth level (basic,
> intermediate, advanced) required by each course. Maybe I'm oversimplifying
> something really hard to do, but why not give this a chance?
>
> IMO having a specific place to discuss training related topics is the very
> first step to reach consensus.
>
>
> I'd like to discuss tool chains too! Maybe we can agree on general concepts
> and implement them on different technologies, that would be the best proof
> that the openEHR approach works and that doesn't matter what technology do
> you like.
> I've a very basic requirement list on each tool mentioned on my blog post
> diagram
> (http://1.bp.blogspot.com/-Yd3JhnuVjgk/TwMepovkBeI/E-4/7UCf-ry2JqY/s1600/openEHR+Toolchain+ppazos+sm.png).
> I've not included datawarehousing tools, but they should be part of the
> ecosystem too.
>
>
> --
> Kind regards,
> Ing. Pablo Pazos Guti?rrez
> LinkedIn: http://uy.linkedin.com/in/pablopazosgutierrez
> Blog: http://informatica-medica.blogspot.com/
> Twitter: http://twitter.com/ppazos
>
>> Date: Wed, 4 Jan 2012 23:23:19 +0900
>
>> Subject: Re: Outcomes & conclusions of the openEHR course in spanish (&
>> ideas for the future)
>> From: skoba at moss.gr.jp
>> To: openehr-clinical at openehr.org
>> CC: openehr-implementers at openehr.org; openehr-technical at openehr.org
>
>>
>> Hi Pablo, and all
>>
>> I perfectly agree your idea. I have thought as you mentioned.
>> I am planning my tool-chains on my Ruby implementation, too.
>> Certification criteria are very difficult to evaluate. Training course
>> would be a homework to localize.
>>
>> Shinji Kobayashi
>>
>> 2012/1/4 pablo pazos :
>> > Hi everyone,
>> >
>> > Recently we have ended the first edition of the course with a huge
>> > success.
>> > And now we are thinking about the next steps to take.
>> >
>> > Here is a post on my blog about the conclusions and future
>> >
>> > actions:?http://informatica-medica.blogspot.com/2012/01/conclusiones-del-curso-de-openehr-en.html
>> > (yo can see it in english by clicking ENGLISH on the top right corner of
>> > the
>> > blog).
>> >
>> >
>> > I want to share with the community a couple of ideas mentioned there. It
>> > would be very nice to know what you think.
>> >
>> > openEHR certification:
>> >
>> > The first idea is on standarizing openEHR training, and to think about
>> > an
>> > openEHR certification. I think this could be very good for the community
>> > and
>> > for the openEHR organization too.
>> >
>> > It could be possible to create a mail list for openEHR trainers
>> > (openehr-trainers at openehr.org)? So we could discuss about the topics and
>> > ways of evaluation, and come out with an standard minimal program to all
>> > openEHR courses.
>> >
>> > If we reach a standard minimal program for openEHR courses, could we get
>> > formal support from openEHR.org to issue internationally valid openEHR
>> > certificates? (obviously this is a question for the future, but IMO we
>> > need
>> > to start thinking about it now).
>> >
>> >
>> > 10 projects to adopt openEHR:
>> >
>> > We thought about 10 projects (or so) in two areas: software and clini

Outcomes & conclusions of the openEHR course in spanish (& ideas for the future)

2012-01-05 Thread pablo pazos

Hi everyone!
I've updated my post adding the students evaluation of the course: 
http://informatica-medica.blogspot.com/2012/01/conclusiones-del-curso-de-openehr-en.htmlFor
 being the first edition, the evaluation was quite positive. But we still have 
a lot of things to improve!
-- 
Kind regards,
Ing. Pablo Pazos Guti?rrez
LinkedIn: http://uy.linkedin.com/in/pablopazosgutierrez
Blog: http://informatica-medica.blogspot.com/
Twitter: http://twitter.com/ppazos

From: pazospa...@hotmail.com
To: openehr-clinical at openehr.org; openehr-technical at openehr.org; 
openehr-implementers at openehr.org
Subject: Outcomes & conclusions of the openEHR course in spanish (& ideas   
for the future)
Date: Tue, 3 Jan 2012 18:14:41 -0300







Hi everyone,
Recently we have ended the first edition of the course with a huge success. And 
now we are thinking about the next steps to take.
Here is a post on my blog about the conclusions and future actions: 
http://informatica-medica.blogspot.com/2012/01/conclusiones-del-curso-de-openehr-en.html(yo
 can see it in english by clicking ENGLISH on the top right corner of the blog).

I want to share with the community a couple of ideas mentioned there. It would 
be very nice to know what you think.
openEHR certification:
The first idea is on standarizing openEHR training, and to think about an 
openEHR certification. I think this could be very good for the community and 
for the openEHR organization too.
It could be possible to create a mail list for openEHR trainers 
(openehr-trainers at openehr.org)? So we could discuss about the topics and 
ways of evaluation, and come out with an standard minimal program to all 
openEHR courses.
If we reach a standard minimal program for openEHR courses, could we get formal 
support from openEHR.org to issue internationally valid openEHR certificates? 
(obviously this is a question for the future, but IMO we need to start thinking 
about it now).

10 projects to adopt openEHR:
We thought about 10 projects (or so) in two areas: software and clinical 
modeling.
Because openEHR propose a tool-chain based process of creating EHRs, we need to 
have each one of the links of that chain in order to adopt and implement 
openEHR easily.
Now there is a little tooling available, and some of it is not open source. In 
projects at a national level we need to use open source software, because each 
country will need to make it's own customizations to each tool.
In the other hand, we need to model other things that are clinical knowledge 
too, like processes and rules to enable CDS, in order to support full EHR 
implementation (e.g. I think we could recommend ways to express rules based on 
archetype ids and paths, and create software tools to support that 
specification, but we need to work the openEHR services specs first).
There is a diagram on my blog post that shows the tools we propose to 1. 
develope if there is no tool that support its functionality or it's 
closed-source, 2. improve the current open source tools.
On the clinical modeling side, we have engaged doctors and nurses on the 
creation and translation of archetypes. Now there are two of our students that 
already commited archetypes to the CKM: Dr. Domingo Liotta and Dr. Leonardo Der 
Jachadurian.
I hope we could propose to create prototypes of those projects in out local 
universities and coordinate the projects so we do not overlap each other, with 
the objective of completing the tool chain with open source developments.


What do you think?

-- 
Kind regards,
Ing. Pablo Pazos Guti?rrez
LinkedIn: http://uy.linkedin.com/in/pablopazosgutierrez
Blog: http://informatica-medica.blogspot.com/
Twitter: http://twitter.com/ppazos

___
openEHR-technical mailing list
openEHR-technical at openehr.org
http://lists.chime.ucl.ac.uk/mailman/listinfo/openehr-technical 
  
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How is assumed value marked on domain types? (in XML)

2012-01-05 Thread Diego Boscá
In ADL, the assumed value of a domain type is marked like this:

defining_code matches {
[local::
at1000, -- Standing
at1001, -- Sitting
at1002, -- Reclining
at1003, -- Lying
at1014; -- Lying with tilt to left
at1001] -- assumed value
}

but in the xml form, the assumed value is missing. The schema does not
reflect this (I know it is outdated)



CODE_PHRASE

  true
  true
  false
  false
  0
  1

at0009

  local

at1000
at1001
at1002
at1003
at1014
  

Can we reach a quick consensus on how should this be stated? Can we
use an  label as in all other types?



Did anybody implement AQL with a LL parser framework?

2012-01-05 Thread Boštjan Lah
Hi,

we have implemented AQL parser with Antlr. 
We started off with a grammar file we found on openehr site and then
worked through it to convert it to Antlr specifics.

Best regards,
Bostjan Lah
Marand d.o.o.




Outcomes & conclusions of the openEHR course in spanish (& ideas for the future)

2012-01-05 Thread pablo pazos
gt; I hope we could propose to create prototypes of those projects in out local
> > universities and coordinate the projects so we do not overlap each other,
> > with the objective of completing the tool chain with open source
> > developments.
> >
> >
> >
> > What do you think?
> >
> >
> > --
> > Kind regards,
> > Ing. Pablo Pazos Guti?rrez
> > LinkedIn: http://uy.linkedin.com/in/pablopazosgutierrez
> > Blog: http://informatica-medica.blogspot.com/
> > Twitter: http://twitter.com/ppazos
> >
> > ___
> > openEHR-clinical mailing list
> > openEHR-clinical at openehr.org
> > http://lists.chime.ucl.ac.uk/mailman/listinfo/openehr-clinical
> 
> ___
> openEHR-clinical mailing list
> openEHR-clinical at openehr.org
> http://lists.chime.ucl.ac.uk/mailman/listinfo/openehr-clinical
  
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Did anybody implement AQL with a LL parser framework?

2012-01-05 Thread Shinji KOBAYASHI
Hi Seref,

My ADL parser does not include AQL parsing.
I used Treetop, which is an Ruby implementation of PEG/Packrat parsing
algorithm,
not LL/LR. PEG/Packrat parser algorithm was described in this paper.
http://bford.info/pub/lang/packrat-icfp02/

Antlr is an implementation of PEG parser by LL techniques. I do not
know Antlr so much.

Packrat parser does not need to separate scanner/parser/lexer and is capable to
infinite look ahead recursive.

I do not know why are you parsing AQL, but this proceeding about querying EHR
by archetype might be helpful for your research.
http://web-ext.u-aizu.ac.jp/labs/sw-db/7108/71080109.pdf

Best regards,
Shinji

2012/1/5 Seref Arikan :
> Greetings,
> The AQL grammar from the wiki has direct and indirect left recursion. Which
> means without changes in the grammar, LL parser generators (both JavaCC and
> Anltr) can't generate parsers for this grammar.
>
> I'm curious if anybody has refactored this grammar for LL parser generators.
> Shinji? Your latest release includes an AQL parser does not it? Could you
> please share your method? I can always look at the code, but you'd probably
> save me time :)
>
> I'm interested in experiences of others too.
>
>
> Kind regards
> Seref
>
>
> ___
> openEHR-technical mailing list
> openEHR-technical at openehr.org
> http://lists.chime.ucl.ac.uk/mailman/listinfo/openehr-technical
>



Did anybody implement AQL with a LL parser framework?

2012-01-05 Thread Erik Sundvall
Hi!

We implemented an AQL parser using JavaCC. My colleague Mikael Nystr?m made
some transformations to make the published AQL grammar work in JavaCC.
Mikael is on vacation right now, but I'm sure he does not mind sharing his
experiences once he gets back.

I do think it would be interesting to switch to ANTLR sooner or later in
order to share efforts between projects with different
implementation/target-languages and because the ANTLRWorks environment
http://www.antlr.org/works/index.html looks promising compared to the
pretty bad JavaCC-plugin in e.g. Eclipse.

Our parser (and thus also the modified grammar) will soon be open sourced
so you are free to use it. So if you are not in an extreme hurry I'd
suggest using or getting inspiration from what we have already done.

Best regards,
Erik Sundvall
erik.sundvall at liu.se http://www.imt.liu.se/~erisu/  Tel: +46-13-286733


On Wed, Jan 4, 2012 at 16:37, Seref Arikan <
serefarikan at kurumsalteknoloji.com> wrote:

> Greetings,
> The AQL grammar from the wiki has direct and indirect left recursion.
> Which means without changes in the grammar, LL parser generators (both
> JavaCC and Anltr) can't generate parsers for this grammar.
>
> I'm curious if anybody has refactored this grammar for LL parser
> generators. Shinji? Your latest release includes an AQL parser does not it?
> Could you please share your method? I can always look at the code, but
> you'd probably save me time :)
>
> I'm interested in experiences of others too.
>
>
> Kind regards
> Seref
>
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Did anybody implement AQL with a LL parser framework?

2012-01-05 Thread Seref Arikan
Thanks Shinji,
The conversions are indeed though :) The problem is with the
indirect/mutual recursions. Even if you deal with recursions, Anltr manages
to find ambiguities, but they can be dealt with backtracking or
syntactic/semantic predicates of Antlr. Maybe I should fire up a Ruby
environment and see your solutions :)

Regards
Seref

Ps: For those who have lost precious brain cells to parsers at one point in
their lives, I'm still resisting the idea of going back to "the dragon
book"...

On Thu, Jan 5, 2012 at 10:05 AM, Shinji KOBAYASHI  wrote:

> Hi Seref,
>
> Left recursive rule is theoretically rewrite to equivalent right recursive.
> In ADL grammar, cADL has left recursive rule that cannot be parsed by LL,
> so I converted them to right recursive rules.
> For example of left recursive to explain(shorten for convenience)
>
> arithmetic_expression:
>   arithmetic_leaf
> | arithmetic_node
>
> arithmetic_node:
>  arithmetic_expression '+' arithmetic_leaf
> |...
>
> arithmetic_leaf:
>  (an arithmetic element)
>
> I converted this grammar to this right recursive rule.
>
> arithmetic_expression:
>   arithmetic_leaf
> | arithmetic_node
>
> arithmetic_node:
>  arithmetic_leaf  '+' arithmetic_expression
> |...
>
> These conversions were the most tough points.
> I wish I could help you.
>
> Regards,
> Shinji
>
> 2012/1/5 Seref Arikan :
> > Thanks Shinji,
> > In general, Antlr has some convenient features, infinite lookahead being
> one
> > of them. I've quickly checked, and Treetop does not seem to support left
> > recursion either. So you must have modified the grammar to make it work.
> > I'm referring to grammar rules such as
> > A : A | B;
> >
> > Tom made the point earlier. At one point it would be good to unify
> various
> > AQL implementation experiences. I'll check out the papers.
> >
> > Best regards
> > Seref
> >
> >
> >
> > On Thu, Jan 5, 2012 at 2:21 AM, Shinji KOBAYASHI 
> wrote:
> >>
> >> Hi Seref,
> >>
> >> My ADL parser does not include AQL parsing.
> >> I used Treetop, which is an Ruby implementation of PEG/Packrat parsing
> >> algorithm,
> >> not LL/LR. PEG/Packrat parser algorithm was described in this paper.
> >> http://bford.info/pub/lang/packrat-icfp02/
> >>
> >> Antlr is an implementation of PEG parser by LL techniques. I do not
> >> know Antlr so much.
> >>
> >> Packrat parser does not need to separate scanner/parser/lexer and is
> >> capable to
> >> infinite look ahead recursive.
> >>
> >> I do not know why are you parsing AQL, but this proceeding about
> querying
> >> EHR
> >> by archetype might be helpful for your research.
> >> http://web-ext.u-aizu.ac.jp/labs/sw-db/7108/71080109.pdf
> >>
> >> Best regards,
> >> Shinji
> >>
> >> 2012/1/5 Seref Arikan :
> >> > Greetings,
> >> > The AQL grammar from the wiki has direct and indirect left recursion.
> >> > Which
> >> > means without changes in the grammar, LL parser generators (both
> JavaCC
> >> > and
> >> > Anltr) can't generate parsers for this grammar.
> >> >
> >> > I'm curious if anybody has refactored this grammar for LL parser
> >> > generators.
> >> > Shinji? Your latest release includes an AQL parser does not it? Could
> >> > you
> >> > please share your method? I can always look at the code, but you'd
> >> > probably
> >> > save me time :)
> >> >
> >> > I'm interested in experiences of others too.
> >> >
> >> >
> >> > Kind regards
> >> > Seref
> >> >
> >> >
> >> > ___
> >> > openEHR-technical mailing list
> >> > openEHR-technical at openehr.org
> >> > http://lists.chime.ucl.ac.uk/mailman/listinfo/openehr-technical
> >> >
> >> ___
> >> openEHR-technical mailing list
> >> openEHR-technical at openehr.org
> >> http://lists.chime.ucl.ac.uk/mailman/listinfo/openehr-technical
> >
> >
> >
> > ___
> > openEHR-technical mailing list
> > openEHR-technical at openehr.org
> > http://lists.chime.ucl.ac.uk/mailman/listinfo/openehr-technical
> >
> ___
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Did anybody implement AQL with a LL parser framework?

2012-01-05 Thread Seref Arikan
Thanks Erik,
AntlrWorks is nice, but it has a problem of slowing down for some reason,
even if the grammar is not that big. Appears to be a known issue, but the
latest version still has this behaviour. Still beats anything else out
there though.

For me, ANTLR's main advantage is its infrastructure to support multiple
target languages. I've used JavaCC a long time ago, and I don't think it is
inferior to Antlr, though Antlr has a bit of a learning curve.

I'm working on the refactoring of the existing grammar via elimination of
left recursions, but my point is pretty much the same with yours; moving
grammars to Antlr would help different groups develop parsers/tools easier.
I've asked the original question to see if people did the actual work of
eliminating recursions and basically making grammar LL compatible, and
based on the responses I can see that they have.

This is good news, since it means we may be able to build a community
around Antlr based implementations.  Good to hear that you'll be putting
something out soon, I'll try to do the same ;)

Regards
Seref


On Thu, Jan 5, 2012 at 10:12 AM, Erik Sundvall  wrote:

> Hi!
>
> We implemented an AQL parser using JavaCC. My colleague Mikael Nystr?m
> made some transformations to make the published AQL grammar work in JavaCC.
> Mikael is on vacation right now, but I'm sure he does not mind sharing his
> experiences once he gets back.
>
> I do think it would be interesting to switch to ANTLR sooner or later in
> order to share efforts between projects with different
> implementation/target-languages and because the ANTLRWorks environment
> http://www.antlr.org/works/index.html looks promising compared to the
> pretty bad JavaCC-plugin in e.g. Eclipse.
>
> Our parser (and thus also the modified grammar) will soon be open sourced
> so you are free to use it. So if you are not in an extreme hurry I'd
> suggest using or getting inspiration from what we have already done.
>
> Best regards,
> Erik Sundvall
> erik.sundvall at liu.se http://www.imt.liu.se/~erisu/  Tel: +46-13-286733
>
>
>
> On Wed, Jan 4, 2012 at 16:37, Seref Arikan <
> serefarikan at kurumsalteknoloji.com> wrote:
>
>> Greetings,
>> The AQL grammar from the wiki has direct and indirect left recursion.
>> Which means without changes in the grammar, LL parser generators (both
>> JavaCC and Anltr) can't generate parsers for this grammar.
>>
>> I'm curious if anybody has refactored this grammar for LL parser
>> generators. Shinji? Your latest release includes an AQL parser does not it?
>> Could you please share your method? I can always look at the code, but
>> you'd probably save me time :)
>>
>> I'm interested in experiences of others too.
>>
>>
>> Kind regards
>> Seref
>>
>
> ___
> openEHR-technical mailing list
> openEHR-technical at openehr.org
> http://lists.chime.ucl.ac.uk/mailman/listinfo/openehr-technical
>
>
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pass_through attribute in ADL 1.5

2012-01-05 Thread Diego Boscá
Put a couple of comments on the wiki, but I think it is a thing that
should be discussed on the list.
In ADL 1.5 a flag 'pass_through'  was added. Its definition is 'Allows
nodes required for structuring data but otherwise redundant for screen
display and reporting to be detected by rendering software'. So now we
have a GUI directive on the ADL. Shouldn't this be a part of the
reference model information (if it is never supposed to be displayed)
or part of a 'visualization template' (another different level).
I would say that more information about visualization will be needed,
and having visualization information separated between two different
places feels like a bad design move.



Did anybody implement AQL with a LL parser framework?

2012-01-05 Thread Seref Arikan
Thanks Shinji,
In general, Antlr has some convenient features, infinite lookahead being
one of them. I've quickly checked, and Treetop does not seem to support
left recursion either. So you must have modified the grammar to make it
work.
I'm referring to grammar rules such as
A : A | B;

Tom made the point earlier. At one point it would be good to unify various
AQL implementation experiences. I'll check out the papers.

Best regards
Seref


On Thu, Jan 5, 2012 at 2:21 AM, Shinji KOBAYASHI  wrote:

> Hi Seref,
>
> My ADL parser does not include AQL parsing.
> I used Treetop, which is an Ruby implementation of PEG/Packrat parsing
> algorithm,
> not LL/LR. PEG/Packrat parser algorithm was described in this paper.
> http://bford.info/pub/lang/packrat-icfp02/
>
> Antlr is an implementation of PEG parser by LL techniques. I do not
> know Antlr so much.
>
> Packrat parser does not need to separate scanner/parser/lexer and is
> capable to
> infinite look ahead recursive.
>
> I do not know why are you parsing AQL, but this proceeding about querying
> EHR
> by archetype might be helpful for your research.
> http://web-ext.u-aizu.ac.jp/labs/sw-db/7108/71080109.pdf
>
> Best regards,
> Shinji
>
> 2012/1/5 Seref Arikan :
> > Greetings,
> > The AQL grammar from the wiki has direct and indirect left recursion.
> Which
> > means without changes in the grammar, LL parser generators (both JavaCC
> and
> > Anltr) can't generate parsers for this grammar.
> >
> > I'm curious if anybody has refactored this grammar for LL parser
> generators.
> > Shinji? Your latest release includes an AQL parser does not it? Could you
> > please share your method? I can always look at the code, but you'd
> probably
> > save me time :)
> >
> > I'm interested in experiences of others too.
> >
> >
> > Kind regards
> > Seref
> >
> >
> > ___
> > openEHR-technical mailing list
> > openEHR-technical at openehr.org
> > http://lists.chime.ucl.ac.uk/mailman/listinfo/openehr-technical
> >
> ___
> openEHR-technical mailing list
> openEHR-technical at openehr.org
> http://lists.chime.ucl.ac.uk/mailman/listinfo/openehr-technical
>
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Outcomes & conclusions of the openEHR course in spanish (& ideas for the future)

2012-01-05 Thread pablo pazos




Hi Rene,
> 
> Hi Pablo,
> 
> > The first idea is on standarizing openEHR training, and to think about
> > an openEHR certification. I think this could be very good for the
> > community and for the openEHR organization too.
> > If we reach a standard minimal program for openEHR courses ...
> 
>  From experiences with an another standard (HL7) based training courses 
> I'd say it may be hard to reach consensus as to what the minimum should 
> be - there is a fair amount of difference between various countries, as 
> well as how one structures a (set of) training courses [e.g. 1 long one, 
> an introductory and an advanced], and the target audience [e.g. 
> clinical, hardcore programmers without any clinical knowledge].
> 
I know it will be difficult to reach consensus, but it's not impossible. 
Firstly, I think we (trainers) need to sit down and talk about what we think 
and what we want to do in/with our courses, until now I have not seen any 
discusions about how to standarize openEHR training and I've been in the 
openEHR community since 2006, and maybe this initiative could have a good 
outcome and be beneficial to the community.
Now we see many demands of the e-health community, from openEHR software tools, 
to openEHR training (there is place for everyone!), and I think we need to make 
a smart move as a community, because these are spreading & adoption 
opportunities for openEHR as a standard.
In my case, I think a openEHR course should include the core element: the dual 
model (IM+AM), at an "above basic" level, something to help students understand 
the concepts and let them continue investigating after the course ending. To do 
so, we need to include basic tooling use (I've included the use of the AR, 
ADLWB and our EHRGen). Maybe that is enough for a clinical modeler profile, but 
for a developer is not, they need to understand what to implement in software 
and in wich way. For that I've created a class on "how to implement openEHR in 
an information system", and I included two approaches: the binding approach 
(used by Opereffa project) and the autogeneration approach (used by the EHRGen 
framework). An introductory level course could leave out the tooling chapter.
> In general the most useful thing for all concerned is probably for the 
> standards organization to make a statement like "we know that trainer X 
> provides good quality training courses" [this aids the trainer in 
> selling the training course, it aids the prospective attendee as a 
> statement of quality, and it aids the standardization body because it 
> has a known list of educators it can refer to]. Determining who provides 
> a good quality training course may not always be that easy to quantify, 
> but in these relatively small standardization communities (whether 
> openEHR, HL7, DICOM, IHE, etcetera) the nomination for approval can be 
> backed up / seconded (or the reverse: "thumbed down") by other known 
> active volunteers.
For this community this is very difficult to evaluate, e.g. right now I think 
I'm the only guy doing an spanish openEHR course, and maybe I'm terrible as a 
trainer, but there's nobody else to compare with. Obviously, I could show the 
student's evaluation of my performance on the course, but I'm more concerned 
about giving a better course (and maybe an openEHR certification) to my 
students than comparing me with other trainers, since I want to collaborate 
with them to agree on some topics and ways of evaluation. I know that maybe 
this is not the way of SDOs, but I believe this should be the openEHR way.
I really want to get consensus and work on this subject in 2012 with anyone who 
want's to collabotare to improve openEHR training.
Does anyone think that a openehr-trainers mail list would be helpful to focus 
the discussion on those subjects?
Kind regards,Pablo.
> 
> TTYL,
> 
> -Rene
> 
> -- 
> 
> Rene Spronk Cell: +31 (0)655 363 446
> Senior ConsultantFax: +31 (0)318 548 090
> Ringholm bv  The Netherlands
> http://www.ringholm.com  mailto:Rene.Spronk at ringholm.com
> twitter:@Ringholmskype:rene_ringholm
> Ringholm is registered at   the Amsterdam KvK reg.# 30155695
> 
> Ringholm bv - Making Standards Work - Courses and consulting
> ___
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> http://lists.chime.ucl.ac.uk/mailman/listinfo/openehr-technical

  
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