Re: [PyMOL] movies in presentations

2004-04-17 Thread chris
Whenever I've done this i've used powerpoint and eiher encoded the vidoe as MPEG or used Flash to make th movie. As with most people here i found powerpoint doesn't show large videos too well within a slideshow when presented as MPEG but have found that flash movies do stream quite well. The

[PyMOL] creating objects from pdb w/out chain id

2004-04-17 Thread Hanspeter Niederstrasser
I'm trying to create an object of a protein from a PDB file that doesn't give a chain ID (pdb is 1BG2). I normally do something like: create atub=(/1jff//a/) to pull a specific chain out of a PDB file, but 1BG2 doesn't have a chain name. And if i use create kin=(/1BG2), the object kin gets

RE: [PyMOL] movies in presentations

2004-04-17 Thread Warren DeLano
My thoughts on Yasara: I'm jealous! Yasara is beautiful, fluid, polished, and significantly ahead of PyMOL in several key technical areas. To me, Yasara seems like the Matrix of molecular graphics: its perceptive experience is a quantum leap beyond PyMOL, VMD, and other conventional programs,

Re: [PyMOL] creating objects from pdb w/out chain id

2004-04-17 Thread Cameron Mura
Hi , Rather than using atom selection macros (/1jff//a/etc.../), the easiest way is probably to execute the following command, which takes advantage of PyMOL's built-in hetatm single-word selector: select just_protein, ! hetatm The hetatm selector consists of all atoms from the PDB