Hi Máire,
PyMOL requires the other mainchain atoms to be present in order to
generate a nice cartoon representation. The only exception to this is if
you're willing to work with a simple tube, in which case you can enable the
cartoon_trace setting ("set cartoon_trace,on"), followed by "ca
Hi,
I'm trying to create a movie showing mainchain and sidechain movements
between two different states of a protein.
I've generated the intermediate files, but they contain only the ca
positions and not the other mainchain atom positions of the residues which
are moving.
I've specified the ss, but
Hi Torin,
Are you by chance trying to write an image without rendering? That will
only work if you have something on display. Rendering and subsequent
writing of an image should not pose a problem from within a script.
Cheers,
Tsjerk
On Thu, 27 May 2004, Torin Huzil wrote:
> I am attemptin
Hi Kaushik,
If you have a pdb file with the charges in the b-factor field, you can use
Robert Campbells color_b.py to color your atoms accordingly.
Maybe you would have to adapt the code a bit to get a good color scheme
for that.
Cheers,
Tsjerk
On Wed, 26 May 2004, Kaushik Raha wrote:
> Hi,
