Dear all
I was just working through the Plugin tutorial
http://www.pymolwiki.org/index.php/Plugins_Tutorial
Writing the plugin from the tutorial as is shown, I happen to receive a
gzip error (from the Python Shell):
zlib.decompress(pdbFile.read()[22:], -zlib.MAX_WBITS)
Traceback (most
Hi Martin,
I have trouble to see how the window buffer size could be negative.
Probably it should be
zlib.decompress(pdbFile.read()[22:], zlib.MAX_WBITS)
Downloading in compressed form is much more efficient. But otherwise I
don't think it should give you trouble doing it like that.
Cheers,
Ok, good to know.
I was using the code as shown on the tutorials page, and since I have
only limited experience with the zlib module, I was not exactly sure
about what it's doing in the first place.
I am still wondering though if it is possible to avoid the reinstallment
of the plugin whenever
Hi PyMolers,
Is there a way to get a rotation angle from a rigid-body domain
movement from PyMol? After superpositioning domain A from structure 1
onto domain A of structure 2, I'd like to state explicitly how many
degrees domain B closes by. I'd also like to draw a CGO arrow showing
Hi Martin,
I am still wondering though if it is possible to avoid the reinstallment
of the plugin whenever a line in the code is changed to see how it
affects the functionality. Can this be circumvented somehow?
Instead of reinstalling the plugin, just edit the code for it
in-place. PyMOL
Hi Mark,
see attached script. It does calculate angle and displacement but does
no visualization. It depends on transformations.py from
http://www.lfd.uci.edu/~gohlke/code/transformations.py.html
The script was inspired by message Fab elbow angle on this list:
