Re: [PyMOL] Anaglyph stereo output from command line

2018-04-23 Thread Jared Sampson
Hi Cody -  I can confirm that I see similar behavior on 2.1.0 (stereo rendered properly from the GUI but not in batch mode) but the issue is not limited to just anaglyph stereo.  Rather, (admittedly not having tested all stereo_mode options) it seems stereo in general doesn't get rendered as

[PyMOL] Anaglyph stereo output from command line

2018-04-23 Thread Cody Jackson
Hi Everyone, I'm trying to make anaglyph 3D figures and movies in command line mode and I'm having some trouble - using incentive version 2.1.1 right now. It seems like anaglyph stereo is only ray traced when the GUI is open. Here's a quick example adapted from the wiki, it saves the desired

Re: [PyMOL] Multiple PyMOL Instances in Python Script

2018-04-23 Thread Thomas Holder
Hi Yang, Yes it's possible to have independent instances. The API has actually been around for a long time. For some reason it was never widely adopted and thus is not very thoroughly tested. Please report any bugs you encounter. Example: import pymol2 p = pymol2.PyMOL() p.start()