Yes, when it comes to trajectory visualization, vmd is just much better
than Pymol.
intra_fit can be used for example this way:
print cmd.intra_fit("my-trajCA", 1)
where my-traj is an object with all the frames and the macro in quotes can
be used to define any selection, in this example CA ato
Dear Ivan,
Thanks for the suggestion. However it has the same result as what I tried
before. The slider does the job, but is not responsive enough for intense
scrolling through trajectories (not sure if it is because the rendering take to
much CPU or because the slider is just not designed for
Hi,
What is the best way to align the snapshots of a trajectory when viewing in
pymol? Is it possible to align using a selection, say on a few selected
residues?
Nese
From: Istvan Kolossvary [ikolos...@gmail.com]
Sent: Tuesday, November 20, 2018 11:43 PM
To: py
Hi all,
I am trying to use pandas in a script in pymol.
These are the first lines of the script:
from pymol import cmd, stored, math import pandas as pd
I get the following error message when running the script:
'module 'pandas' has no attribute 'plotting'
File
"/home/andt88/anaconda3/lib/p
