científicas:
> http://www.jcoll.org/coll-pdfs/
>
>
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t; watermark?
>
> Best
> Nikhil Nambiar
>
>
>
>
>
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Hello,
Sorry, I'm a little late to reply here, but we released 3.1.6.1 early last
week which should hopefully address the issue where files were doubly
loaded.
Jarrett J.
On Thu, May 29, 2025 at 7:45 PM Jarrett Johnson <
jarrett.john...@schrodinger.com> wrote:
> Hi Kevin,
>
&g
u want smoother edges).
Hope that helps,
Jarrett J.
On Thu, May 29, 2025 at 9:00 PM Jarrett Johnson <
jarrett.john...@schrodinger.com> wrote:
> Hi Norbert,
>
> Thanks very much for the repro steps. I could reproduce this and I believe
> I know where the issue lies (since I caus
antialias_shader, 1" cause no problem.
>
> Best regards,
>
> Norbert
>
>
>
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e. I do not see this behavior in version 3.0.0.
>
>
>
> --
>
> Kevin Jude, PhD
>
> Structural Biology Research Specialist, Garcia Lab
>
> Howard Hughes Medical Institute
>
> Stanford University School of Medicine
>
> Beckman B177, 279 Campus Drive
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#x27;)
> cmd.set('stick_radius', 0.15)
> cmd.set('sphere_scale', 0.3)
> cmd.color('gray', 'elem C')
> cmd.color('red', 'elem O')
> cmd.color('blue', 'elem N')
>
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t, Northwest Labs room 311.13
>
> Cambridge, MA 02138
> Voice: (617) 495-5616e-mail: gau...@mcb.harvard.edu
>
> https://projects.iq.harvard.edu/gaudetlab/home
>
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wrote:
> Hi,
>
>
> Unfortunately, I'm still getting the same error ("no module named
> tkinter") and a failure to initialise. Any ideas?
>
>
> Cheers,
>
>
> Irwin
> --
> *From:* Jarrett Johnson
> *Sent:* 17 F
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e. Are there any plans for it
> to be open source one day?
>
> Best regards,
> Martin
> On 20.01.2025 19:44, Jarrett Johnson wrote:
>
> Hi Martin,
>
> Timeline and its corresponding Python API is only available for on
> Incentive versions.
>
> Jarrett J.
nce.
>
> Best regards,
> Martin
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hing.
>
>
> El lun, 20 may 2024 a la(s) 12:36 p.m., Jarrett Johnson (
> jarrett.john...@schrodinger.com) escribió:
>
>> Hi Francisco,
>>
>> Which version of PyMOL are you using?
>>
>> Jarrett J.
>>
>> On Mon, May 20, 2024 at 2:30 PM Franc
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Cheers,
- The PyMOL Team at Schrödinger
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6Sp2TTu?domain=mackaymatthewslab.org>
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nd it worked. Many thanks!
> Best regards,
>
> Anna
> On 29.11.2023 04:47, Jarrett Johnson wrote:
>
> Hi Anna,
>
> Toggling an object's activity by clicking on the GUI uses the underlying
> *disable
> *command. If you already know the name of the color ramp, you
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rrett J
On Mon, Jul 24, 2023 at 1:27 PM Foster, Mark wrote:
> Thanks Jarrett for the response.
>
>
>
> I think `spectrum` should work, but I can’t figure out how to access the
> proximity parameter calculated by `ramp_new` in order to use it directly
> (e.g., “p.prox”), or t
resiliency of these tribal nations and
> recognize the historical context that has and continues to affect the
> Indigenous peoples of this land.
>
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Sorry, typo. For the second approach, state should be `i + 1` and not `-1`"
Jarrett J.
On Thu, Jul 20, 2023 at 8:49 AM Jarrett Johnson <
jarrett.john...@schrodinger.com> wrote:
> Hi Neena,
>
> Is the split_states necessary? You can query the distance between atoms on
>
> structures and find polar contacts within this selection?
>>
>> Many thanks,
>> Neena
>>
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'''
See more here: http://www.pymolwiki.org/index.php/cen
ponding residues in object “pred”?
>
>
>
> In addition, what if in the pred structure, chains are named A, B, and C,
> corresponding to base structure L, H, A, respectively, how will I handle
> that?
>
> (I was planning to rename the chains, if there is no nice trick to
> t
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ng the matrix values with the object kept in its new
> position.
> Regards,
> Philip
>
> On Fri, Jun 2, 2023 at 12:56 PM Jarrett Johnson <
> jarrett.john...@schrodinger.com> wrote:
>
>> Hi Philip,
>>
>> Have you tried the `matrix_reset` command instead?
an provide.
> Regards,
> Philip
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; Jessica Lim
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d really appreciate it. I'm
> really stuck and in need of help.
>
> Thanks so much in advance,
>
> Kyle
>
>
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Can anyone help? Thanks.
>
> --
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PyMOL. Stay tuned for more details on our website about PyMOL 3.0 and
our future roadmap later this year.
Best,
PyMOL Development Team
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Hi,
Your version of glm (default with Centos7 with yum) should now work. I
committed a change to fix this compiler error about twelve hours ago. You
just need to pull the latest changes.
Best,
Jarrett J.
On Tue, Jul 12, 2022 at 10:24 PM 张敏华 wrote:
> Dear Jarrett Johnson:
> In
ling list
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ve questions about PyMOL.
>
> Kind regards,
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Hi James,
This is a known issue. Try disabling undo before using the command.
Best,
Jarrett Johnson
On Mon, Feb 14, 2022 at 10:37 AM James Procter (Staff) <
j.proc...@dundee.ac.uk> wrote:
> Dear pymol-users
>
> Could anyone confirm that the following test of the pair_fit com
on via Conda install?
> See here: https://pymol.org/2/support.html?
> Supported platform states M1 with rosetta2. Perhaps with some penalty for
> efficiency though. Anyone tried?
>
> Sent from my iPhone
>
> On Dec 5, 2021, at 10:27 PM, Jarrett Johnson <
> jarrett.john...@s
uild of PyMOL for M1 Macs yet?
>
> Cheers,
>
> Chris
>
>
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Regards,
> K. Zeghida.
>
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[image: Schr
dvice as to how to solve this.
>
> Many thanks in advance!
>
> Best,
>
> Joli
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>
> On 28.10.2021, at 14:40, Jarrett Johnson
> wrote:
>
> Hi George,
>
> This issue should've been addressed in PyMOL 2.5.1. I would consider
> upgrading if you can.
>
> Best,
> Jarrett J
>
> On Thu, Oct 28, 2021 at 9:31 AM George Tzotzos via PyMOL-user
problem?
>
>
>
> Thank you all very much.
>
>
>
> Michael
>
>
>
>
>
>
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ubstitution failed:
>
> layer1/Scene.cpp:2557:42: note: mismatched types ‘const T*’ and
> ‘glm::tvec3’
>
> I->m_view.translate(glm::make_vec3(v1)); /* offset view to compensate */
> ^
> error: command 'g++' failed with exit sta
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[image: Schrodinger Logo] &
classroom and connect you with educators from
all over the world.
https://www.schrodinger.com/conferences-meetings/2021-schrodinger-educators-day-online
As always, we welcome any feedback and bug reports.
Cheers,
- The PyMOL Team at Schrödinger
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[image
m/schrodinger/pymol-open-source.git?
>
> On 05/10/2021 12:27 PM, Jarrett Johnson wrote:
>
> Greetings,
>
> We are happy to announce the release of PyMOL 2.5. Download ready-to-use
> bundles from https://pymol.org/ or update your installation with "conda
> install
converter tools including
2to3 may be useful if you need to update python scripts.
Find the complete release notes at:
https://pymol.org/d/media:new25
We welcome any feedback and bug reports.
Cheers,
- The PyMOL Team at Schrödinger
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thanks,
> Neena
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ory
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> United Kingdom
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much.
>
> All the best,
> Yannis
>
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researcher in Yokohama, Japan
>
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TBbrFjOSxSGtf80f5GLwY4UoeoqXOgi2y1Y&s=WVkM4La4mZsWQ2beQpPA_hXCmu_AFvn6RbGtetuCDqA&e=
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nux_Install
>
>
> Cheers,
>
> Joseph.
>
>
>
> Joseph S. Brock | PhD
> Researcher
> Drew Lab
> Department of Biochemistry and Biophysics
> Stockholm University
> --
> *From:* Jarrett Johnson
> *Sent:* Thursday, 25 October 2018 11:34:
t;
> Joseph S. Brock | PhD
> Researcher
> Drew Lab
> Department of Biochemistry and Biophysics
> Stockholm University
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> U
pplication.
On Fri, Sep 28, 2018 at 2:14 PM Jack Vizelter
wrote:
> Is Mojave then officially supported with PyMol?
>
>
>
>
>
>
>
> *From: *Jarrett Johnson
> *Date: *Friday, September 28, 2018 at 12:59 PM
> *To: *"sa...@umich.edu"
> *Cc: *Pymol User
> Archives: http://www.mail-archive.com/pymol-users@lists.sourceforge.net
>
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Jarrett Johnson,
Schrödinger
Hello Nathan,
While we prepare to rollout the "quiet" argument for pair_fit, in the
meantime try:
cmd.feedback("disable", "executive", "results")
Jarrett J.
On Sun, Jul 22, 2018 at 6:47 PM, Jarrett Johnson <
jarrett.john...@schrodinger.com>
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