Hi Criss, It doesn't appear to be broken from what I see. Helices may not appear transparent to each other if you're using single-layer transparency by default. Setting `transparency_mode` to 3 should show transparent objects beneath each other.
https://pymolwiki.org/index.php/Transparency_mode Best, Jarrett J On Sat, May 8, 2021 at 10:01 AM Criss Hartzell <criss.hartz...@gmail.com> wrote: > I am using PYMOL2.4.1 on windows. > I want to make two cartoon helices transparent in an object having 10 > heleices. Before version 2.3, I would make a copy of the object, hide the > two transparent helices on the original object and show them on the copy > with transparency set to 0.5. After PYMOL2.3, cartoon-transparency is > supposed to work on the atom level, but when I try to apply cartoon > transparency to the two helices as a selection > (cartoon_transparency,0.5,sele), the helices change color but do not become > transparent. Am I doing something wrong? > > -- > Criss Hartzell > _______________________________________________ > PyMOL-users mailing list > Archives: http://www.mail-archive.com/pymol-users@lists.sourceforge.net > Unsubscribe: > https://sourceforge.net/projects/pymol/lists/pymol-users/unsubscribe -- *Jarrett Johnson* | Senior Developer [image: Schrodinger Logo] <https://www.schrodinger.com/>
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