Re: [PyMOL] Database with protein experimental pKa values, with possibility to search for Cysteines and .pdb structure.

Hi Troels, about 8 month again I used their dataset: PINT: Protein-protein Interactions Thermodynamic Database. Kumar MD, Gromiha MM. Department of Biochemical Engineering and Science, Kyushu Institute of Technology Iizuka 820-8502, Fukuoka, Japan. sh...@bse.kyutech.ac.jp

Re: [PyMOL] (no subject)

Hi Chris, the emails are only sent to you because you subscribed to the pymol-users list. If you don't want them anymore you need to unsubscribe. Click on Show details at the top of this email. Click then on: unsubscribe Unsubscribe from this mailing-list That will do the magic. On Fri,

Re: [PyMOL] CEalign - PyMOL Build

+3 from me and people to busy writing grant applications. Built-in CE would be awesome! Thomas On Tue, Feb 2, 2010 at 12:19, Thomas Stout tst...@exelixis.com wrote: I thought that I had +1'd to this last week, but I don't see that note... If legal, I'm also +1-ing for 5 additional people

Re: [PyMOL] Help Needed

Dear Kousik, Sue Jones PROTORP server should do the trick: http://bioinformatics.sussex.ac.uk/protorp Cheers, Thomas On Wed, Dec 9, 2009 at 14:57, Kousik Kundu kou...@informatik.uni-freiburg.de wrote: Dear Sir,         I, Kousik Kundu, am a Ph.D student at university of Freiburg,

[PyMOL] Fwd: Warren L Delano Memorial Award

Dear friends and colleagues: It's now been over a week since Warren has passed away.  We are trying to move toward a permanent way to honor Warren's memory and what he stood for: Open Source Computational Biosciences and molecular visualization. To do this, Jim Wells and I put together a mission

[PyMOL] save sequence

Dear all, apologies for the stupid question, but I was wondering if it is possible to save the sequence (one letter AA codes) of the structure(s) open in PyMol? Many thanks, Thomas

Re: [PyMOL] Sequence alignment and Structure alignment

You can save the alignment object resulting from an align command to an aln file: align sele1, sele2, object=aln_obj save alignment.aln, aln_obj Cheers. Thomas On Sun, Sep 28, 2008 at 21:14, Praveen Madala p.mad...@imb.uq.edu.au wrote: Hi, Can I able to save sequence alignment got ..

[PyMOL] APBS error

Dear all, when trying to use the APBS plugin I experience the following problem The first time I tried to run it it the error message was simply ObjectMapLoadDXFile-Error: Unable to open file! Now the second time it pops up an error log: Error: 1 WindowsError Exception in Tk callback