Re: [PyMOL] pymol comments

2018-03-07 Thread Thomas Holder
Hi Ulrike, > - Is there a command, which would be: select all residues, which are right > now shown as sticks ? Background : sometimes you analyze the protein a little > bit more empirically, that means you highlight some residues in sticks e.g. > at domain interfaces , then you undo this and

[PyMOL] pymol comments

2018-03-07 Thread Ulrike Scheib
Hello pymolers, - Is there a command, which would be: select all residues, which are right now shown as sticks ? Background : sometimes you analyze the protein a little bit more empirically, that means you highlight some residues in sticks e.g. at domain interfaces , then you undo this and

Re: [PyMOL] comments ?

2005-08-12 Thread Michael Cosgrove
Hi I have installed version 0.98 on my new dual processor machine running windows XP. Pymol runs fine, but when trying to load a large PDB file (~4Mb), the program crashes and I get a runtime error: This application has requested the Runtime to terminate it in an unusual way Does anyone have

Re: [PyMOL] comments ?

2005-08-04 Thread Sebastien Moretti
Yes -- this is a bug -- thanks for pointing it out. Cheers, Warren It seems that the 'print ...' commands is unrecognized in p1m files too. But, '#' doesn't work in p1m file. Error: unrecognized keyword: #second The # line involves an error but the script goes on. I think

Re: [PyMOL] comments ?

2005-08-04 Thread Sebastien Moretti
Just for the sake of the uninitiated What are .p1m files and how do they differ from regular .pml files. I took a quick look at Sebastians file and it looked pretty much like a regular .pml file to me. Cheers, .p1m files are web oriented. With them, you can embedded whole

Re: [PyMOL] comments ?

2005-08-02 Thread Sebastien Moretti
'#' seems to be incorrect: It is not incorrect. If you post your script and how you use it we might be able to help. Also, if you have something in you $HOME/.pymolrc or $HOME/.pymolrc.py you should try temporarily moving these files elsewhere and trying again. Something may have gone wrong

Re: [PyMOL] comments ?

2005-08-01 Thread lieven
On Monday 01 August 2005 11:08, Sebastien Moretti wrote: Hello, I try to add comment lines in my pml scripts but I don't know how to do. I tried #, /*, //, !-- or -- characters but everything fails. ... How can I use comments in PyMOL scripts ? The hash character (#) works to include comments

Re: [PyMOL] comments ?

2005-08-01 Thread Ezequiel H Panepucci
I try to add comment lines in my pml scripts but I don't know how to do. I tried #, /*, //, !-- or -- characters but everything fails. use '#' but on a line of its own not at the end of line containing a pymol command, like this: # color 1DHS in red color red, 1DHS

Re: [PyMOL] comments ?

2005-08-01 Thread Sebastien Moretti
I try to add comment lines in my pml scripts but I don't know how to do. I tried #, /*, //, !-- or -- characters but everything fails. use '#' but on a line of its own not at the end of line containing a pymol command, like this: # color 1DHS in red color red, 1DHS '#' seems to be

Re: [PyMOL] comments ?

2005-08-01 Thread Ezequiel H Panepucci
'#' seems to be incorrect: It is not incorrect. If you post your script and how you use it we might be able to help. Also, if you have something in you $HOME/.pymolrc or $HOME/.pymolrc.py you should try temporarily moving these files elsewhere and trying again. Something may have gone wrong