Hi Clarisa,
You can pass "width" and "height" arguments to the "mpng" command, like this:
mpng fileprefix, width=720, height=480
See also https://pymolwiki.org/index.php/mpng
Hope that helps.
Cheers,
Thomas
> On Jan 29, 2019, at 5:47 PM, Clarisa Alvarez
> wrote:
>
> Could anyone help
Could anyone help me how i could change resolution of my png images make to
perform a video, that changes resolution when i open with movie maer.
Thanks in advance.
Clarisa.
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Hi Appu,
interpolation between two conformations is called morphing. You can do
this with the incentive version of PyMOL, which includes an additional
component called RigiMOL.
With incentive PyMOL 1.6, you can morph directly from the object menu:
A generate morph
See also:
Dear All,
I am working on an enzyme which close it active site when
react with substrate. I have solved the structure in both open and closed
conformation. Now i want to make the movie of showing a series of change in
going from open to close conformation. please tell me how to
Hi Guridis,
you need to store object matrices with the mview store command and use
rotate instead of turn (object versus camera rotation).
And you should avoid B as object name, because it's the b-factor
keyword in the PyMOL selection language.
mset 1x100
frame 1
mview store, object=molB
I want to make a movie with two objects.One object should remain
static(A) while the other(B) should rotate 90 degrees in x-axis. I
cannot keep object A immobile.
The commands i am using are:
show surface,A
show surface,B
super B,A
mset 1x100
frame 1
scene 001,store
mview
Hi Babban,
Expanding on what Andreas wrote, I would make a few modifications
given your request. The following code will load your PDBs into one
object, fit the states and setup an optimal view. Next the movie
will be 10 seconds long (300 frames) but will play through the 1
states. Adjust
Holfelder!
I don't see your doubts. Your first point's a guess - and you're right
- and the second one a questions.
Before I answer, one warning: If you have 1 pdb files and numbering
starts at 1, the last one will be 1, not like you say. Be
aware of what you have.
for i in
Just a little bit of a further note on top of what Andreas said. If you are
doing all of the commands from a script you might want to cmd.disable() the
first molecule so that you can align to it, but not see it in the
animation. Then you can delete each molecule (after 1) after you've used
it.
Dear MfG, formerly known as Holfelder, here's an expanded script:
load x_1.pdb
zoom
#orient molecule at this point as you desire
ray
png x_1
disable x_1
for i in range (2,10001): \
cmd.load(x_%d.pdb %i) \
cmd.super(x_%d %i, x_1) \
cmd.ray() \
cmd.png(x_%05d %i) \
Hi Aiko,
That's impressive for only using PyMOL one day. As a solution, just add,
mview reinterpolate
right before
frame 433.
So, at the end of your file you should have:
frame 432
set_view (\
0.264227241,0.815219104,0.515365601,\
-0.842250228, -0.065306552,
Dear Mailing list!
I have just started using pymol to make a molecular movie of a protein
ligand system.
What I came up with is:
###
reinitialize
set matrix_mode, 1
set movie_panel, 1
set scene_buttons, 1
set
, February 11, 2011 5:52 AM
To: pymol-users@lists.sourceforge.net
Subject: [PyMOL] pymol movie scripting for beginners questions
Dear Mailing list!
I have just started using pymol to make a molecular movie of a protein
ligand system.
What I came up
Hi,
I have a problem appending two scenes in a movie. First I want to make a
turn of the protein. Then I want to move between a series of 50 morphs of
a conformational change of the protein. The problem is that the last mset
command seems to override the first, so that I only see the last scene
Magnus,
Use 'madd' in place of the second (any and subsequent) 'mset' commands.
Cheers,
Warren
-Original Message-
From: Magnus Andersson [mailto:m...@farma.ku.dk]
Sent: Monday, March 16, 2009 10:39 AM
To: pymol-users@lists.sourceforge.net
Subject: [PyMOL] pymol movie
Hi,
I
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