Re: [PyMOL] PyMOL 3.1.4

2025-04-05 Thread Oganesyan, Vaheh
To add a bit to Engin’s message: under A when selecting “extract” I’m getting “copy” instead. I think it is a bug in 3.1.4. Thank you. Vaheh From: Engin Özkan Sent: Wednesday, March 19, 2025 8:02 PM To: pymol-users@lists.sourceforge.net Subject: [PyMOL] PyMOL 3.1.4 Hi, In the latest version

Re: [PyMOL] PyMOL 3.1.4

2025-04-05 Thread Thomas Stewart
Hello Engin and Vaheh, Both of these are simply oversights on my part and will be fixed in the next patch (3.1.4.1). For this update, I completely rewrote the code for the Contents Panel and there appears to be certain ASHLC menus that are not pulling the correct set of menu options for their obje

Re: [PyMOL] PyMOL 3.1.4

2025-03-27 Thread Engin Özkan
Dear Thomas, Thank you for getting back quickly and on your work on PyMOL. Looking forward to testing the patched version. Best, Engin On 3/20/25 9:44 AM, Thomas Stewart wrote: Hello Engin and Vaheh, Both of these are simply oversights on my part and will be fixed in the next patch (3.1.

Re: [PyMOL] PyMOL 3.1.4

2025-03-26 Thread Thomas Stewart
Hello Everyone, We have just released PyMOL 3.1.4.1 (which is still a digit of pi so the pi mole remains!) to fix the issues discussed in this thread. Please give this version a try if you haven't updated recently since many other small issues have also been fixed in recent patches. You can down

Re: [PyMOL] PyMOL 3.1.4

2025-03-21 Thread Istvan Kolossvary
Hi Thomas, Engin, Thanks for looking into this. Another thing with Select is that in this Pi version there is a "delete everything" option, which is very dangerous (it does delete every single object). It used to be "remove atoms" to remove only the atoms in the selection. Best regards, Istva