Re: [PyMOL] The Wiki appears outdated or in error

ubject: Re: [PyMOL] The Wiki appears outdated or in error In case you are interested, Jim, Jmol will read (most/some) PyMOL session files, and Jmol can then create both an idtf for generating a u3d file, and a small sample TeX file also that can be used to create a PDF containing it. I had some in

Re: [PyMOL] The Wiki appears outdated or in error

In case you are interested, Jim, Jmol will read (most/some) PyMOL session files, and Jmol can then create both an idtf for generating a u3d file, and a small sample TeX file also that can be used to create a PDF containing it. I had some interest in u3d back in 2009, when I wrote this exporter.

Re: [PyMOL] The Wiki appears outdated or in error

[mailto:thomas.hol...@schrodinger.com] Sent: Thursday, March 31, 2016 10:55 AM To: jimkress...@kressworks.org Cc: pymol-users <pymol-users@lists.sourceforge.net> Subject: Re: [PyMOL] The Wiki appears outdated or in error Hi Jim, There is a beta version of Incentive PyMOL available for download fro

Re: [PyMOL] The Wiki appears outdated or in error

m: Thomas Holder [mailto:thomas.hol...@schrodinger.com] > Sent: Sunday, March 27, 2016 4:10 PM > To: pymol-users <pymol-users@lists.sourceforge.net> > Subject: Re: [PyMOL] The Wiki appears outdated or in error > > Hi Jared, > > Thanks a lot for the patch. Applied to SVN

Re: [PyMOL] The Wiki appears outdated or in error

: Sunday, March 27, 2016 4:10 PM To: pymol-users <pymol-users@lists.sourceforge.net> Subject: Re: [PyMOL] The Wiki appears outdated or in error Hi Jared, Thanks a lot for the patch. Applied to SVN rev 4154. Cheers, Thomas On 25 Mar 2016, at 20:03, Sampson, Jared M. <jms2...@cumc.columbia.e

Re: [PyMOL] The Wiki appears outdated or in error

Hi Jared, Thanks a lot for the patch. Applied to SVN rev 4154. Cheers, Thomas On 25 Mar 2016, at 20:03, Sampson, Jared M. wrote: > Hi Jim - > > Here's a patch for Open Source PyMOL (rev4153) that adds the > "collada_background_box" setting (default=0). If

Re: [PyMOL] The Wiki appears outdated or in error

ks.org Cc: pymol-users <pymol-users@lists.sourceforge.net> Subject: Re: [PyMOL] The Wiki appears outdated or in error Hi Jim - Here's a patch for Open Source PyMOL (rev4153) that adds the "collada_background_box" setting (default=0). If you're using Open Source PyMOL and are

Re: [PyMOL] The Wiki appears outdated or in error

Hi Jim - Here's a patch for Open Source PyMOL (rev4153) that adds the "collada_background_box" setting (default=0). If you're using Open Source PyMOL and are up to applying it and rebuilding, feel free to use it. Otherwise, I already sent it to Thomas, so hopefully it will be incorporated

Re: [PyMOL] The Wiki appears outdated or in error

ia.edu] Sent: Thursday, March 24, 2016 2:26 PM To: jimkress...@kressworks.org Cc: Sampson, Jared M. <jms2...@cumc.columbia.edu>; pymol-users <pymol-users@lists.sourceforge.net> Subject: Re: [PyMOL] The Wiki appears outdated or in error Hi Jim - When I set geome

Re: [PyMOL] The Wiki appears outdated or in error

...@cumc.columbia.edu] Sent: Wednesday, March 23, 2016 10:53 PM To: jimkress...@kressworks.org<mailto:jimkress...@kressworks.org> Cc: pymol-users <pymol-users@lists.sourceforge.net> Subject: Re: [PyMOL] The Wiki appears outdated or in error Hi Jim - This is something we've been ta

Re: [PyMOL] The Wiki appears outdated or in error

March 22, 2016 1:40 PM To: jimkress...@kressworks.org <mailto:jimkress...@kressworks.org> Cc: pymol-users <pymol-users@lists.sourceforge.net <mailto:pymol-users@lists.sourceforge.net> > Subject: Re: [PyMOL] The Wiki appears outdated or in error Hi Jim - The COLLADA

Re: [PyMOL] The Wiki appears outdated or in error

sers@lists.sourceforge.net<mailto:pymol-users@lists.sourceforge.net> Subject: Re: [PyMOL] The Wiki appears outdated or in error Hi James - If I remember correctly, PyMOL's IDTF output currently only supports triangles meshes (not cylinders or spheres, e.g.), so unfortunately you're basically

Re: [PyMOL] The Wiki appears outdated or in error

e-mail and destroy all copies of the original message. From: Sampson, Jared M. [mailto:jms2...@cumc.columbia.edu] Sent: Tuesday, March 22, 2016 1:40 PM To: jimkress...@kressworks.org Cc: pymol-users <pymol-users@lists.sourceforge.net> Subject: Re: [PyMOL] The Wiki appears outdated or in erro

Re: [PyMOL] The Wiki appears outdated or in error

y e-mail and destroy all copies of the original message. From: Sampson, Jared M. [mailto:jms2...@cumc.columbia.edu] Sent: Wednesday, March 16, 2016 2:28 PM To: jimkress...@kressworks.org<mailto:jimkress...@kressworks.org> Cc: pymol-users@lists.sourceforge.net Subject: Re: [PyMOL] The Wiki a

Re: [PyMOL] The Wiki appears outdated or in error

day, March 16, 2016 2:28 PM To: jimkress...@kressworks.org Cc: pymol-users@lists.sourceforge.net Subject: Re: [PyMOL] The Wiki appears outdated or in error Hi James - If I remember correctly, PyMOL's IDTF output currently only supports triangles meshes (not cylinders or spheres, e.g.

Re: [PyMOL] The Wiki appears outdated or in error

Hi James - If I remember correctly, PyMOL's IDTF output currently only supports triangles meshes (not cylinders or spheres, e.g.), so unfortunately you're basically limited to surface representations for output directly into that format. As a workaround, you could try saving your scene in

Re: [PyMOL] The Wiki appears outdated or in error

nesday, March 16, 2016 2:28 PM To: jimkress...@kressworks.org Cc: pymol-users@lists.sourceforge.net Subject: Re: [PyMOL] The Wiki appears outdated or in error Hi James - If I remember correctly, PyMOL's IDTF output currently only supports triangles meshes (not cylinders or spheres, e.g