Hi Clarisa,
You can pass "width" and "height" arguments to the "mpng" command, like this:
mpng fileprefix, width=720, height=480
See also https://pymolwiki.org/index.php/mpng
Hope that helps.
Cheers,
Thomas
> On Jan 29, 2019, at 5:47 PM, Clarisa Alvarez
> wrote:
>
> Could anyone help m
Hi Appu,
interpolation between two conformations is called "morphing". You can do
this with the incentive version of PyMOL, which includes an additional
component called RigiMOL.
With incentive PyMOL 1.6, you can morph directly from the object menu:
A > generate > morph
See also:
http://pymolwik
Hi Guridis,
you need to store object matrices with the "mview store" command and use
"rotate" instead of "turn" (object versus camera rotation).
And you should avoid "B" as object name, because it's the b-factor
keyword in the PyMOL selection language.
mset 1x100
frame 1
mview store, object=mo
Hi Babban,
Expanding on what Andreas wrote, I would make a few modifications
given your request. The following code will load your PDBs into one
object, fit the states and setup an optimal view. Next the movie
will be 10 seconds long (300 frames) but will play through the 1
states. Adjust
Dear MfG, formerly known as Holfelder, here's an expanded script:
load x_1.pdb
zoom
#orient molecule at this point as you desire
ray
png x_1
disable x_1
for i in range (2,10001): \
cmd.load("x_%d.pdb" %i) \
cmd.super("x_%d" %i, "x_1") \
cmd.ray() \
cmd.png("x_%05d" %i) \
cmd.di
Just a little bit of a further note on top of what Andreas said. If you are
doing all of the commands from a script you might want to cmd.disable() the
first molecule so that you can align to it, but not see it in the
animation. Then you can delete each molecule (after 1) after you've used
it.
20
Holfelder!
I don't see your doubts. Your first point's a guess - and you're right
- and the second one a questions.
Before I answer, one warning: If you have 1 pdb files and numbering
starts at 1, the last one will be 1, not like you say. Be
aware of what you have.
for i in ra
Hi Aiko,
That's impressive for only using PyMOL one day. As a solution, just add,
mview reinterpolate
right before
frame 433.
So, at the end of your file you should have:
frame 432
set_view (\
0.264227241,0.815219104,0.515365601,\
-0.842250228, -0.065306552,0.53512
Aiko,
I can't directly comment on your problem, but I had good experience with
the eMovie plugin. May be give that a try.
http://www.weizmann.ac.il/ISPC/eMovie.html
HTH
Carsten
> -Original Message-
> From: Aiko Matsumoto [mailto:aikomatsumoto1...@googlemail.com]
> Sent: Friday,
Magnus,
Use 'madd' in place of the second (any and subsequent) 'mset' commands.
Cheers,
Warren
> -Original Message-
> From: Magnus Andersson [mailto:m...@farma.ku.dk]
> Sent: Monday, March 16, 2009 10:39 AM
> To: pymol-users@lists.sourceforge.net
> Subject: [PyMOL] pymol movie
>
> Hi,
>
Okay I found the problem...
This fails:
"mpng mov # will create mov0001.png, mov0002.png, etc."
but this:
"mpng mov
# will create mov0001.png, mov0002.png, etc."
works fine.
The problem is that PyMOL isn't yet 100% tolerant of comments which follow
PyMOL commands on the same line. Unfortu
Jennifer,
That looks like some blatantly buggy behavior in PyMOL. Strange thing is, I
don't get the same behavior on the version I have installed. Thus, I may have
inadvertently fixed this problem...
What version of PyMOL are you using? (under Windows obviously...)
Thanks,
Warren
--
ma
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