Warren and Matt,
Thanks so much for your help. I must be using the
stock glibc because "set max_threads, 1" allows me to
ray trace without crashing. I will tell my system
administrator to patch glibc. Do you know where I
should look for the patch?
My debian/testing system at home also has trou
to make all spheres smaller, try something like this:
set sphere_scale, 0.3
play around with the 0.3 bit to get the size you want.
last time i checked, you could only have one sphere_scale per object, so
if you want different sized spheres in the same picture (i don't think you
do), you may need
rbax...@uchicago.edu wrote:
Dear All,
I have some residues shown as sticks and a heteroatom shown as a sphere. I woul
dlike to make the sphere a little smaller compared to the sticks. How can I
control the radius of the sphere?
Hi Richard -
Add the following lines (suitably modified) to your
Dear All,
I have some residues shown as sticks and a heteroatom shown as a sphere. I woul
dlike to make the sphere a little smaller compared to the sticks. How can I
control the radius of the sphere?
Any help appreciated, snippet of script below,
Richard Baxter
select pocket3=((s;RCVL and i;189
Morri,
(First, thanks Matt for the great diagnostic advice!)
This sounds to me like a potential threading deadlock, possible
due to the broken threading in RedHat 9. Are you using the stock
version or have you patched glibc?
If you haven't patched your RedHat 9, then one
Morri Feldman wrote:
I am running pymol .93. When I try to ray trace a scene, the gui shows a
white status bar that moves halfway across the screen and then freezes.
After this the GUI is frozen and must be killed. No error messages are
shown. The computer is running RedHat 9 and has 4 proces
I am running pymol .93. When I try to ray trace a scene, the gui shows a
white status bar that moves halfway across the screen and then freezes.
After this the GUI is frozen and must be killed. No error messages are
shown. The computer is running RedHat 9 and has 4 processors. Has
anyone else
Dan,
Thats what happens when there is no secondary structure
information defined. PyMOL's dss command will solve this, but note
that dss will not give identical results to DSSP (the closest thing to a
standard for secondary structure assignment).
Cheers,
Warren
--
mailto:war...@delano
Hello everyone,
I have a generated PDB file which gives very thick ribbons when I try to do
the cartoon display. Apart from that, it seems fine. I remember seeing
this problem once before with a file I downloaded from the PDB, and I
couldn¹t resolve the problem then. Any ideas on what to do?
