[PyMOL] label bond type and molecule name

2010-06-03 Thread Sebastian Kruggel
dear all, i am quite new to pymol and even if i looked up the documentation i still have two -probably *very* stupid- questions: i can't find a way to label the bond type (single, double, triple, aromatic) in a multimol2, i didn't even find a way to select bonds at all... also i don't manage

Re: [PyMOL] label bond type and molecule name

2010-06-03 Thread Jason Vertrees
Sebastian, Welcome to PyMOL. The easiest way to set a valence is by using the Builder. Click on Builder (http://pymolwiki.org/index.php/Builder) from the upper control panel. After that you should see in the builder Bonds: [Create] [Delete] [Cycle] [I] [II] [III] All you have to do now is to

Re: [PyMOL] pymol dies when minimizing

2010-06-03 Thread Maia Cherney
Hi Jason, I had my problem in ubuntu, not windows. I could open pymol only from the education menu (not from a terminal). I wrote several e-mails to pymol list, and nothing helped me. Then incidentally I upgraded my ubuntu from 8.04 to 9.04 and several things started working automatically, suc

Re: [PyMOL] pymol dies when minimizing

2010-06-03 Thread Jason Vertrees
Great, glad to hear it works, Maia. For those Windows users with problems, what versions of Windows and PyMOL are you using? Cheers, -- J On Thu, Jun 3, 2010 at 11:47 AM, Maia Cherney wrote: > Hi Jason, > > I had my problem in ubuntu, not windows. I could open pymol only from the > education m